Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46949 * 111.00084 * 2 1 4 4 C 1.53052 * 109.36404 * 183.19157 * 3 2 1 5 5 N 1.46960 * 109.36451 * 301.60003 * 4 3 2 6 6 C 1.46894 * 111.00299 * 183.19158 * 5 4 3 7 7 C 1.50693 * 109.47634 * 169.99987 * 6 5 4 8 8 C 1.38315 * 119.96462 * 89.99529 * 7 6 5 9 9 C 1.38260 * 120.15250 * 179.74891 * 8 7 6 10 10 C 1.38132 * 120.07458 * 359.97438 * 9 8 7 11 11 C 1.38890 * 119.92074 * 359.97438 * 10 9 8 12 12 N 1.39673 * 120.07176 * 179.97438 * 11 10 9 13 13 S 1.65606 * 120.00039 * 45.00246 * 12 11 10 14 14 O 1.42100 * 106.40229 * 178.53873 * 13 12 11 15 15 O 1.42101 * 106.40074 * 311.46330 * 13 12 11 16 16 C 1.76202 * 107.21658 * 64.99988 * 13 12 11 17 17 H 1.07997 * 120.00016 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99938 * 180.02562 * 16 13 12 19 19 N 1.31520 * 120.00132 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00221 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.46922 * 89.99781 * 20 18 16 22 22 H 1.48493 * 109.47246 * 210.00208 * 20 18 16 23 23 H 1.48504 * 109.46684 * 329.99998 * 20 18 16 24 24 C 1.38081 * 119.96457 * 269.72422 * 7 6 5 25 25 C 1.46954 * 110.88078 * 59.31672 * 5 4 3 26 26 C 1.46959 * 110.99785 * 123.80272 * 2 1 3 27 27 H 1.08997 * 109.47030 * 59.99719 * 1 2 3 28 28 H 1.09001 * 109.47504 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46540 * 299.99836 * 1 2 3 30 30 H 1.08999 * 109.49093 * 63.22552 * 3 2 1 31 31 H 1.08998 * 109.51037 * 303.16769 * 3 2 1 32 32 H 1.09004 * 109.48913 * 181.63180 * 4 3 2 33 33 H 1.08996 * 109.49221 * 61.56458 * 4 3 2 34 34 H 1.08996 * 109.47355 * 49.99460 * 6 5 4 35 35 H 1.09013 * 109.46906 * 289.99927 * 6 5 4 36 36 H 1.07999 * 119.91988 * 359.72209 * 8 7 6 37 37 H 1.07997 * 119.96259 * 179.97438 * 9 8 7 38 38 H 1.07994 * 120.03556 * 180.02562 * 10 9 8 39 39 H 0.96998 * 120.00384 * 224.99836 * 12 11 10 40 40 H 0.96999 * 120.00173 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.03732 * 0.27501 * 24 7 6 42 42 H 1.09003 * 109.48501 * 60.65154 * 25 5 4 43 43 H 1.08997 * 109.49054 * 180.70916 * 25 5 4 44 44 H 1.08991 * 109.48814 * 296.77165 * 26 2 1 45 45 H 1.08999 * 109.49265 * 56.84687 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0804 5 7 4.0502 0.5657 1.0597 6 6 5.5191 0.5657 1.0597 7 6 6.0215 -0.0077 2.3596 8 6 6.2518 -1.3669 2.4719 9 6 6.7176 -1.8965 3.6611 10 6 6.9553 -1.0689 4.7412 11 6 6.7262 0.2965 4.6315 12 7 6.9649 1.1361 5.7219 13 16 8.3552 0.9698 6.6062 14 8 8.3165 1.9770 7.6079 15 8 8.4803 -0.4147 6.9006 16 6 9.7008 1.3762 5.5437 17 1 9.5125 1.6655 4.5204 18 6 10.9941 1.3239 6.0185 19 7 11.2236 0.9701 7.2643 20 14 12.4208 1.7540 4.8920 21 1 12.7076 3.2077 4.9895 22 1 13.6231 0.9837 5.2997 23 1 12.0657 1.4123 3.4911 24 6 6.2569 0.8251 3.4355 25 6 3.5234 -0.8062 1.0597 26 6 1.9956 -0.7633 1.1401 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6939 1.8773 0.9174 31 1 1.6014 1.9132 -0.8600 32 1 3.9179 2.3447 -0.0513 33 1 3.8254 0.8478 -1.0107 34 1 5.8825 1.5873 0.9487 35 1 5.8825 -0.0413 0.2303 36 1 6.0667 -2.0161 1.6288 37 1 6.8960 -2.9583 3.7455 38 1 7.3196 -1.4832 5.6697 39 1 6.3164 1.8166 5.9612 40 1 12.1335 0.9329 7.5982 41 1 6.0769 1.8864 3.3472 42 1 3.8253 -1.3116 0.1423 43 1 3.9178 -1.3472 1.9198 44 1 1.6939 -0.2821 2.0703 45 1 1.6014 -1.7791 1.1110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = -48.977354 kcal Electronic energy + Delta-G solvation = -27469.930551 eV Core-core repulsion = 23613.649819 eV Total energy + Delta-G solvation = -3856.280732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.83187 -38.79801 -35.99833 -35.30489 -34.20159 -34.07188 -33.09962 -31.47313 -31.12160 -28.87788 -28.19640 -26.16656 -25.42519 -23.84431 -23.26429 -21.98658 -20.94067 -19.95142 -19.04554 -17.47862 -17.02941 -16.45794 -16.21412 -15.75344 -15.50998 -15.24600 -15.06749 -14.97079 -14.72584 -14.44922 -14.23475 -13.93816 -13.69648 -13.34857 -12.77909 -12.75921 -12.61077 -12.25765 -12.06335 -12.04728 -11.76715 -11.64036 -11.48234 -11.29255 -11.23028 -11.05768 -11.04100 -10.78346 -10.62112 -10.56748 -10.42217 -10.15614 -9.71636 -9.27465 -8.89186 -8.69806 -8.52686 -8.34522 -7.74747 -6.73850 -5.35868 1.66759 1.76369 2.23796 3.05791 3.12422 3.19727 3.63868 3.72631 4.03492 4.25760 4.56730 4.62388 4.64076 4.73387 4.78845 4.97454 5.05459 5.10742 5.19346 5.26141 5.26818 5.31914 5.38542 5.46705 5.53370 5.54946 5.61481 5.66602 5.68276 5.79324 5.82911 5.85730 5.90507 6.08205 6.35893 6.49576 6.59327 6.65042 6.69020 6.80826 6.89038 6.94054 6.99863 7.11110 7.28820 7.38068 7.85318 7.94419 8.85549 10.20252 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.002733 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.802670 B =10243.608537 C =10627.486185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.057 3.943 5 N -0.534 5.534 6 C 0.099 3.901 7 C -0.071 4.071 8 C -0.140 4.140 9 C -0.099 4.099 10 C -0.145 4.145 11 C 0.179 3.821 12 N -1.076 6.076 13 S 2.707 3.293 14 O -0.999 6.999 15 O -0.996 6.996 16 C -1.013 5.013 17 H 0.103 0.897 18 C 0.134 3.866 19 N -0.845 5.845 20 Si 0.922 3.078 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.262 1.262 24 C -0.123 4.123 25 C 0.053 3.947 26 C 0.057 3.943 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.160 0.840 39 H 0.411 0.589 40 H 0.291 0.709 41 H 0.122 0.878 42 H 0.040 0.960 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.270 -2.140 -15.565 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.072 4.072 5 N -0.259 5.259 6 C -0.028 4.028 7 C -0.072 4.072 8 C -0.160 4.160 9 C -0.118 4.118 10 C -0.167 4.167 11 C 0.081 3.919 12 N -0.819 5.819 13 S 2.808 3.192 14 O -0.989 6.989 15 O -0.986 6.986 16 C -1.147 5.147 17 H 0.122 0.878 18 C -0.084 4.084 19 N -0.475 5.475 20 Si 0.745 3.255 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.145 4.145 25 C -0.075 4.075 26 C -0.072 4.072 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.177 0.823 39 H 0.245 0.755 40 H 0.102 0.898 41 H 0.140 0.860 42 H 0.058 0.942 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.006 -2.529 -14.464 21.721 hybrid contribution 0.744 0.808 -1.000 1.486 sum -15.261 -1.721 -15.465 21.795 Atomic orbital electron populations 1.22339 0.87286 1.02046 1.00631 1.62180 1.07766 1.14064 1.43195 1.22159 0.94649 0.89291 1.01010 1.22157 0.94235 0.98676 0.92098 1.62142 1.07292 1.14089 1.42378 1.20985 0.86572 1.01124 0.94105 1.19347 0.99791 0.93376 0.94706 1.20889 1.02784 0.94378 0.97938 1.20938 0.98683 0.99587 0.92597 1.22070 1.00857 0.91870 1.01868 1.17407 0.98007 0.89381 0.87086 1.54005 1.39650 1.45268 1.43012 1.00819 0.71761 0.73413 0.73170 1.93391 1.86503 1.60846 1.58201 1.93302 1.85805 1.35301 1.84154 1.30414 1.08348 1.62376 1.13513 0.87828 1.24733 0.99533 0.89174 0.94979 1.69889 1.24653 1.38420 1.14518 0.86140 0.79290 0.79214 0.80828 1.19175 1.19928 1.18563 1.20921 1.02635 0.99610 0.91340 1.22259 0.93864 0.89756 1.01600 1.22186 0.94880 0.98265 0.91824 0.91449 0.91401 0.95568 0.93873 0.90436 0.90157 0.94054 0.89872 0.93860 0.86869 0.85959 0.82267 0.75540 0.89814 0.85971 0.94177 0.89203 0.93855 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.60 60.07 0.58 0.76 16 2 N -0.55 -5.00 4.97 -242.76 -1.21 -6.20 16 3 C 0.06 0.50 5.62 -3.77 -0.02 0.48 16 4 C 0.06 0.52 5.61 -3.76 -0.02 0.50 16 5 N -0.53 -5.83 4.70 -235.91 -1.11 -6.94 16 6 C 0.10 1.13 5.12 -4.98 -0.03 1.11 16 7 C -0.07 -1.00 4.89 -104.65 -0.51 -1.51 16 8 C -0.14 -1.92 7.92 -39.54 -0.31 -2.23 16 9 C -0.10 -1.54 10.04 -39.61 -0.40 -1.93 16 10 C -0.15 -2.76 9.18 -39.38 -0.36 -3.12 16 11 C 0.18 3.37 6.21 -83.79 -0.52 2.85 16 12 N -1.08 -21.67 5.77 32.41 0.19 -21.49 16 13 S 2.71 70.48 4.95 -107.50 -0.53 69.95 16 14 O -1.00 -28.75 18.02 -57.17 -1.03 -29.79 16 15 O -1.00 -27.72 14.94 -57.17 -0.85 -28.57 16 16 C -1.01 -27.65 9.68 30.60 0.30 -27.35 16 17 H 0.10 2.64 7.81 -52.49 -0.41 2.23 16 18 C 0.13 3.70 5.46 -17.82 -0.10 3.61 16 19 N -0.85 -24.51 13.19 55.43 0.73 -23.78 16 20 Si 0.92 20.55 29.54 -169.99 -5.02 15.53 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.12 -1.98 9.62 -39.38 -0.38 -2.36 16 25 C 0.05 0.55 5.25 -3.77 -0.02 0.53 16 26 C 0.06 0.54 5.62 -3.76 -0.02 0.52 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.03 0.19 8.14 -51.92 -0.42 -0.23 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.90 7.97 -51.93 -0.41 0.49 16 35 H 0.04 0.46 8.06 -51.92 -0.42 0.04 16 36 H 0.11 1.26 7.98 -52.49 -0.42 0.84 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.16 3.37 5.58 -52.49 -0.29 3.08 16 39 H 0.41 7.02 8.95 -34.47 -0.31 6.71 16 40 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.99 5.94 -51.93 -0.31 0.68 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.65 8.13 -51.93 -0.42 0.22 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -33.86 375.26 -11.77 -45.63 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.77 Total: 8.17 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -1.82 Total: -28.16 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -1.40 Total: -58.41 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -1.88 Total: -58.36 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 70.48 SS G_CDS: -0.53 Total: 69.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.86 -11.77 -45.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.350 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds