Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46949 * 111.00084 * 2 1 4 4 C 1.53052 * 109.36404 * 183.19157 * 3 2 1 5 5 N 1.46960 * 109.36451 * 301.60003 * 4 3 2 6 6 C 1.46894 * 111.00299 * 183.19158 * 5 4 3 7 7 C 1.50693 * 109.47634 * 169.99987 * 6 5 4 8 8 C 1.38315 * 119.96462 * 89.99529 * 7 6 5 9 9 C 1.38260 * 120.15250 * 179.74891 * 8 7 6 10 10 C 1.38132 * 120.07458 * 359.97438 * 9 8 7 11 11 C 1.38890 * 119.92074 * 359.97438 * 10 9 8 12 12 N 1.39673 * 120.07176 * 179.97438 * 11 10 9 13 13 S 1.65606 * 120.00039 * 45.00246 * 12 11 10 14 14 O 1.42100 * 106.40229 * 178.53873 * 13 12 11 15 15 O 1.42101 * 106.40074 * 311.46330 * 13 12 11 16 16 C 1.76202 * 107.21658 * 64.99988 * 13 12 11 17 17 H 1.07997 * 120.00016 * 359.97438 * 16 13 12 18 18 C 1.37874 * 119.99938 * 180.02562 * 16 13 12 19 19 N 1.31520 * 120.00132 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00221 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.46922 * 89.99781 * 20 18 16 22 22 H 1.48493 * 109.47246 * 210.00208 * 20 18 16 23 23 H 1.48504 * 109.46684 * 329.99998 * 20 18 16 24 24 C 1.38081 * 119.96457 * 269.72422 * 7 6 5 25 25 C 1.46954 * 110.88078 * 59.31672 * 5 4 3 26 26 C 1.46959 * 110.99785 * 123.80272 * 2 1 3 27 27 H 1.08997 * 109.47030 * 59.99719 * 1 2 3 28 28 H 1.09001 * 109.47504 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46540 * 299.99836 * 1 2 3 30 30 H 1.08999 * 109.49093 * 63.22552 * 3 2 1 31 31 H 1.08998 * 109.51037 * 303.16769 * 3 2 1 32 32 H 1.09004 * 109.48913 * 181.63180 * 4 3 2 33 33 H 1.08996 * 109.49221 * 61.56458 * 4 3 2 34 34 H 1.08996 * 109.47355 * 49.99460 * 6 5 4 35 35 H 1.09013 * 109.46906 * 289.99927 * 6 5 4 36 36 H 1.07999 * 119.91988 * 359.72209 * 8 7 6 37 37 H 1.07997 * 119.96259 * 179.97438 * 9 8 7 38 38 H 1.07994 * 120.03556 * 180.02562 * 10 9 8 39 39 H 0.96998 * 120.00384 * 224.99836 * 12 11 10 40 40 H 0.96999 * 120.00173 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.03732 * 0.27501 * 24 7 6 42 42 H 1.09003 * 109.48501 * 60.65154 * 25 5 4 43 43 H 1.08997 * 109.49054 * 180.70916 * 25 5 4 44 44 H 1.08991 * 109.48814 * 296.77165 * 26 2 1 45 45 H 1.08999 * 109.49265 * 56.84687 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 -0.0804 5 7 4.0502 0.5657 1.0597 6 6 5.5191 0.5657 1.0597 7 6 6.0215 -0.0077 2.3596 8 6 6.2518 -1.3669 2.4719 9 6 6.7176 -1.8965 3.6611 10 6 6.9553 -1.0689 4.7412 11 6 6.7262 0.2965 4.6315 12 7 6.9649 1.1361 5.7219 13 16 8.3552 0.9698 6.6062 14 8 8.3165 1.9770 7.6079 15 8 8.4803 -0.4147 6.9006 16 6 9.7008 1.3762 5.5437 17 1 9.5125 1.6655 4.5204 18 6 10.9941 1.3239 6.0185 19 7 11.2236 0.9701 7.2643 20 14 12.4208 1.7540 4.8920 21 1 12.7076 3.2077 4.9895 22 1 13.6231 0.9837 5.2997 23 1 12.0657 1.4123 3.4911 24 6 6.2569 0.8251 3.4355 25 6 3.5234 -0.8062 1.0597 26 6 1.9956 -0.7633 1.1401 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6939 1.8773 0.9174 31 1 1.6014 1.9132 -0.8600 32 1 3.9179 2.3447 -0.0513 33 1 3.8254 0.8478 -1.0107 34 1 5.8825 1.5873 0.9487 35 1 5.8825 -0.0413 0.2303 36 1 6.0667 -2.0161 1.6288 37 1 6.8960 -2.9583 3.7455 38 1 7.3196 -1.4832 5.6697 39 1 6.3164 1.8166 5.9612 40 1 12.1335 0.9329 7.5982 41 1 6.0769 1.8864 3.3472 42 1 3.8253 -1.3116 0.1423 43 1 3.9178 -1.3472 1.9198 44 1 1.6939 -0.2821 2.0703 45 1 1.6014 -1.7791 1.1110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -75.990018 kcal Electronic energy + Delta-G solvation = -27471.101908 eV Core-core repulsion = 23613.649819 eV Total energy + Delta-G solvation = -3857.452089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82947 -39.81774 -37.53758 -36.85131 -36.23920 -35.53687 -35.13958 -32.54818 -31.86683 -30.07384 -29.19436 -28.28854 -26.28288 -24.60852 -24.06102 -23.24807 -22.20540 -21.02417 -20.68714 -19.34179 -18.59550 -18.08976 -17.20093 -17.02605 -16.97903 -16.43880 -16.03500 -15.92630 -15.83146 -15.74029 -15.57228 -15.21010 -15.03595 -14.63789 -14.03492 -13.85544 -13.75253 -13.46009 -13.38230 -13.23898 -13.03245 -12.99792 -12.81100 -12.60544 -12.58673 -12.48699 -12.32225 -12.21801 -12.04128 -11.97536 -11.76770 -11.66848 -11.27003 -11.22633 -10.92426 -9.70341 -9.40227 -9.25147 -9.11349 -8.76445 -7.51045 0.08689 0.48182 0.60289 1.32883 1.33390 1.49806 2.18842 2.55726 2.70222 2.82799 3.00051 3.20353 3.58850 3.83469 3.93772 4.04980 4.12958 4.14108 4.24247 4.34069 4.36278 4.43372 4.47406 4.51801 4.59371 4.62727 4.64425 4.68088 4.78582 4.87916 4.88750 4.95232 5.01864 5.05236 5.10556 5.12671 5.21306 5.28879 5.54728 5.67929 5.69882 5.86962 5.95780 6.00154 6.06897 6.19069 6.19894 6.37737 6.75389 8.18371 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.002733 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.802670 B =10243.608537 C =10627.486185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.058 3.942 4 C 0.058 3.942 5 N -0.546 5.546 6 C 0.103 3.897 7 C -0.064 4.064 8 C -0.125 4.125 9 C -0.099 4.099 10 C -0.177 4.177 11 C 0.147 3.853 12 N -1.063 6.063 13 S 2.715 3.285 14 O -1.037 7.037 15 O -1.024 7.024 16 C -1.031 5.031 17 H 0.116 0.884 18 C 0.073 3.927 19 N -0.891 5.891 20 Si 0.989 3.011 21 H -0.254 1.254 22 H -0.261 1.261 23 H -0.249 1.249 24 C -0.124 4.124 25 C 0.055 3.945 26 C 0.059 3.941 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.128 0.872 39 H 0.423 0.577 40 H 0.300 0.700 41 H 0.135 0.865 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.028 0.972 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 -2.075 -19.298 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.070 4.070 4 C -0.070 4.070 5 N -0.272 5.272 6 C -0.024 4.024 7 C -0.065 4.065 8 C -0.144 4.144 9 C -0.118 4.118 10 C -0.198 4.198 11 C 0.051 3.949 12 N -0.812 5.812 13 S 2.817 3.183 14 O -1.028 7.028 15 O -1.014 7.014 16 C -1.165 5.165 17 H 0.134 0.866 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.807 3.193 21 H -0.178 1.178 22 H -0.185 1.185 23 H -0.173 1.173 24 C -0.146 4.146 25 C -0.073 4.073 26 C -0.070 4.070 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.146 0.854 39 H 0.259 0.741 40 H 0.110 0.890 41 H 0.153 0.847 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.046 0.954 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.468 -2.463 -18.189 24.660 hybrid contribution 0.710 0.727 0.076 1.019 sum -15.758 -1.737 -18.113 24.071 Atomic orbital electron populations 1.22387 0.86219 1.02677 1.00995 1.62227 1.08831 1.14185 1.42727 1.22187 0.94481 0.89228 1.01141 1.22199 0.94429 0.98909 0.91436 1.62113 1.06904 1.14589 1.43548 1.20972 0.87027 1.01730 0.92684 1.19714 0.98180 0.93425 0.95163 1.21261 1.00415 0.94746 0.97996 1.21203 0.97981 1.00411 0.92182 1.21990 1.03049 0.92700 1.02106 1.17642 1.00465 0.89234 0.87590 1.53280 1.38306 1.46130 1.43441 1.00245 0.72493 0.72377 0.73137 1.93327 1.87476 1.61700 1.60246 1.93272 1.86692 1.36494 1.84926 1.30733 1.09219 1.62387 1.14185 0.86613 1.25974 1.02846 0.88612 0.96606 1.69976 1.25938 1.39744 1.16604 0.85138 0.75581 0.79722 0.78821 1.17767 1.18507 1.17262 1.21084 1.02142 1.00664 0.90706 1.22233 0.94272 0.89470 1.01328 1.22157 0.94569 0.98851 0.91392 0.90340 0.90700 0.95915 0.95056 0.88830 0.89226 0.93788 0.89074 0.92340 0.83400 0.83732 0.85437 0.74060 0.88997 0.84705 0.93714 0.90063 0.95380 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.60 127.69 1.23 1.53 16 2 N -0.55 -8.85 4.97 -921.94 -4.58 -13.43 16 3 C 0.06 0.87 5.62 86.31 0.49 1.36 16 4 C 0.06 0.90 5.61 86.31 0.48 1.39 16 5 N -0.55 -10.42 4.70 -900.29 -4.23 -14.65 16 6 C 0.10 2.00 5.12 85.56 0.44 2.44 16 7 C -0.06 -1.62 4.89 -19.89 -0.10 -1.72 16 8 C -0.12 -3.06 7.92 22.29 0.18 -2.89 16 9 C -0.10 -2.96 10.04 22.25 0.22 -2.73 16 10 C -0.18 -6.88 9.18 22.40 0.21 -6.67 16 11 C 0.15 5.61 6.21 38.21 0.24 5.85 16 12 N -1.06 -44.23 5.77 -51.37 -0.30 -44.52 16 13 S 2.71 147.12 4.95 -56.49 -0.28 146.84 16 14 O -1.04 -62.28 18.02 -128.00 -2.31 -64.58 16 15 O -1.02 -60.04 14.94 -128.00 -1.91 -61.95 16 16 C -1.03 -57.18 9.68 67.73 0.66 -56.52 16 17 H 0.12 5.91 7.81 -2.91 -0.02 5.89 16 18 C 0.07 4.05 5.46 84.65 0.46 4.51 16 19 N -0.89 -52.94 13.19 21.45 0.28 -52.66 16 20 Si 0.99 41.38 29.54 68.60 2.03 43.40 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 24 C -0.12 -3.83 9.62 22.40 0.22 -3.62 16 25 C 0.05 0.99 5.25 86.31 0.45 1.44 16 26 C 0.06 1.00 5.62 86.31 0.49 1.48 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 29 H 0.02 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.22 8.07 -2.38 -0.02 1.20 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.66 7.97 -2.39 -0.02 1.64 16 35 H 0.06 0.99 8.06 -2.38 -0.02 0.97 16 36 H 0.15 2.64 7.98 -2.91 -0.02 2.61 16 37 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.13 5.76 5.58 -2.91 -0.02 5.74 16 39 H 0.42 14.95 8.95 -96.75 -0.87 14.09 16 40 H 0.30 15.96 8.31 -92.71 -0.77 15.19 16 41 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 42 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 1.58 5.94 -2.39 -0.01 1.57 16 44 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.09 1.29 8.13 -2.39 -0.02 1.27 16 Total: -1.00 -75.32 375.26 -5.52 -80.84 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: 0.13 Total: 34.85 kcal Atomic # 6 Polarization: -59.80 SS G_CDS: 5.65 Total: -54.15 kcal Atomic # 7 Polarization: -116.43 SS G_CDS: -8.82 Total: -125.26 kcal Atomic # 8 Polarization: -122.31 SS G_CDS: -4.22 Total: -126.53 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 147.12 SS G_CDS: -0.28 Total: 146.84 kcal Total: -75.32 -5.52 -80.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.847 kcal (2) G-P(sol) polarization free energy of solvation -75.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds