Wall clock time and date at job start Sat Apr 11 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28724 * 125.31623 * 2 1 4 4 N 1.28983 * 108.98458 * 180.02562 * 3 2 1 5 5 C 1.34185 * 107.25725 * 359.97438 * 4 3 2 6 6 C 1.47999 * 126.70253 * 179.97438 * 5 4 3 7 7 O 1.21537 * 120.00037 * 180.02562 * 6 5 4 8 8 N 1.34770 * 119.99877 * 0.02562 * 6 5 4 9 9 C 1.46499 * 120.00207 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.62607 * 36.65475 * 9 8 6 11 11 C 1.54320 * 110.70956 * 273.55387 * 9 8 6 12 12 N 1.47448 * 107.23109 * 219.33066 * 11 9 8 13 13 C 1.46903 * 110.99819 * 236.73824 * 12 11 9 14 14 C 1.50700 * 109.46944 * 190.00146 * 13 12 11 15 15 O 1.21292 * 119.99974 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99960 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00244 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99751 * 0.02562 * 17 16 14 19 19 C 1.38952 * 120.00325 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99425 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00146 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47243 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46793 * 120.00206 * 21 19 17 24 24 H 1.48497 * 109.47208 * 240.00265 * 21 19 17 25 25 C 1.47842 * 108.56788 * 359.00847 * 12 11 9 26 26 C 1.54903 * 104.79814 * 24.09497 * 25 12 11 27 27 H 1.09004 * 110.99078 * 81.01739 * 26 25 12 28 28 O 1.42901 * 110.99192 * 204.83765 * 26 25 12 29 29 N 1.28864 * 125.32147 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47505 * 89.97555 * 1 2 3 31 31 H 1.09001 * 109.46854 * 209.97633 * 1 2 3 32 32 H 1.09006 * 109.47658 * 329.97002 * 1 2 3 33 33 H 0.96998 * 120.00301 * 0.02562 * 8 6 5 34 34 H 1.08993 * 109.88598 * 338.73311 * 11 9 8 35 35 H 1.08996 * 109.88723 * 99.92725 * 11 9 8 36 36 H 1.08997 * 109.47196 * 310.00506 * 13 12 11 37 37 H 1.09003 * 109.46602 * 70.00412 * 13 12 11 38 38 H 0.97001 * 119.99974 * 0.02562 * 16 14 13 39 39 H 0.97003 * 119.99703 * 179.97438 * 20 19 17 40 40 H 1.09000 * 110.37475 * 142.92339 * 25 12 11 41 41 H 1.08996 * 110.37375 * 265.15062 * 25 12 11 42 42 H 0.96701 * 113.99760 * 292.26072 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0504 0.0000 4 7 3.4469 0.6877 -0.0005 5 6 3.4686 -0.6540 -0.0003 6 6 4.6693 -1.5193 -0.0013 7 8 4.5470 -2.7285 -0.0014 8 7 5.8983 -0.9663 -0.0020 9 6 7.0869 -1.8227 -0.0024 10 1 6.9197 -2.7114 -0.6112 11 6 7.4781 -2.2140 1.4382 12 7 8.9501 -2.1783 1.5161 13 6 9.4855 -3.4738 1.9555 14 6 10.9549 -3.3330 2.2593 15 8 11.5022 -2.2593 2.1227 16 7 11.6609 -4.4005 2.6817 17 6 12.9977 -4.2726 2.9576 18 1 13.4849 -3.3164 2.8368 19 6 13.7256 -5.3730 3.3936 20 7 13.1325 -6.5364 3.5411 21 14 15.5471 -5.1989 3.7688 22 1 15.9712 -3.7970 3.5239 23 1 15.7954 -5.5495 5.1904 24 1 16.3228 -6.1117 2.8911 25 6 9.4829 -1.8077 0.1878 26 6 8.3287 -1.0375 -0.5008 27 1 8.2959 -0.0011 -0.1648 28 8 8.4426 -1.1091 -1.9234 29 7 2.2100 -1.0514 -0.0005 30 1 -0.3634 0.0004 -1.0276 31 1 -0.3633 -0.8902 0.5135 32 1 -0.3635 0.8897 0.5143 33 1 5.9960 -0.0012 -0.0015 34 1 7.0520 -1.5016 2.1445 35 1 7.1193 -3.2191 1.6598 36 1 8.9586 -3.7994 2.8523 37 1 9.3470 -4.2112 1.1647 38 1 11.2234 -5.2594 2.7898 39 1 13.6407 -7.3047 3.8451 40 1 10.3568 -1.1652 0.2952 41 1 9.7378 -2.7015 -0.3817 42 1 9.2042 -0.6328 -2.2814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195365652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:01 Heat of formation + Delta-G solvation = 2.107819 kcal Electronic energy + Delta-G solvation = -28653.042685 eV Core-core repulsion = 24284.976709 eV Total energy + Delta-G solvation = -4368.065976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.149 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.59124 -41.47070 -40.38922 -39.36670 -36.94061 -36.39717 -35.96847 -35.53154 -34.39392 -33.27131 -31.64314 -29.95380 -29.18308 -28.11644 -26.53037 -25.75153 -24.11033 -22.88099 -22.49633 -21.82059 -21.01156 -19.91595 -19.67562 -18.76380 -18.59564 -18.05892 -17.82731 -17.41151 -16.71561 -16.46918 -16.32307 -16.07965 -15.91870 -15.46899 -15.26175 -15.09784 -14.58438 -14.40372 -14.30939 -14.16783 -14.14178 -13.71908 -13.47349 -13.31962 -13.21437 -13.18973 -12.97229 -12.57232 -12.39082 -12.38578 -12.28791 -12.10174 -11.82554 -11.74973 -11.52353 -11.47594 -11.10796 -10.53732 -10.30433 -9.99261 -9.29517 -8.45036 -5.93609 -0.22295 0.19915 0.74512 1.37747 1.42821 1.56921 1.58794 1.78826 2.06614 2.28473 2.56752 2.71005 2.99527 3.09468 3.20878 3.27533 3.51858 3.73900 3.91205 3.94677 4.04649 4.17636 4.23567 4.26785 4.27152 4.36885 4.49270 4.50056 4.60404 4.62310 4.74299 4.79545 4.94106 4.97171 5.17005 5.42810 5.75955 5.88233 6.05538 6.09143 6.61685 6.72616 6.76919 6.97278 7.14441 7.57911 8.12992 8.72724 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.028622 B = 0.001916 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.032807 B =14612.845730 C =15083.546470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.114 5.114 3 N -0.059 5.059 4 N -0.263 5.263 5 C 0.116 3.884 6 C 0.622 3.378 7 O -0.538 6.538 8 N -0.677 5.677 9 C 0.141 3.859 10 H 0.095 0.905 11 C 0.037 3.963 12 N -0.512 5.512 13 C 0.049 3.951 14 C 0.444 3.556 15 O -0.612 6.612 16 N -0.576 5.576 17 C -0.330 4.330 18 H 0.081 0.919 19 C -0.015 4.015 20 N -0.922 5.922 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.272 1.272 25 C 0.026 3.974 26 C 0.105 3.895 27 H 0.104 0.896 28 O -0.567 6.567 29 N -0.262 5.262 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.423 0.577 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.395 0.605 39 H 0.277 0.723 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.178 13.009 -8.943 30.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.029 5.029 3 N -0.053 5.053 4 N -0.138 5.138 5 C -0.168 4.168 6 C 0.403 3.597 7 O -0.412 6.412 8 N -0.329 5.329 9 C 0.035 3.965 10 H 0.113 0.887 11 C -0.092 4.092 12 N -0.237 5.237 13 C -0.082 4.082 14 C 0.231 3.769 15 O -0.497 6.497 16 N -0.213 5.213 17 C -0.459 4.459 18 H 0.099 0.901 19 C -0.215 4.215 20 N -0.563 5.563 21 Si 0.818 3.182 22 H -0.196 1.196 23 H -0.198 1.198 24 H -0.197 1.197 25 C -0.103 4.103 26 C 0.045 3.955 27 H 0.122 0.878 28 O -0.375 6.375 29 N -0.118 5.118 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.162 0.838 33 H 0.262 0.738 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -26.589 13.219 -8.555 30.902 hybrid contribution 1.290 -1.005 -0.234 1.652 sum -25.299 12.214 -8.790 29.436 Atomic orbital electron populations 1.23290 0.64886 1.09553 1.08781 1.50820 1.12766 0.99406 1.39918 1.78873 0.96095 1.14416 1.15887 1.76097 1.11158 1.09609 1.16897 1.25005 0.93157 0.90511 1.08090 1.16161 0.81279 0.85402 0.76885 1.90862 1.86032 1.14175 1.50114 1.45390 1.03189 1.11573 1.72784 1.22093 0.83205 0.94388 0.96846 0.88687 1.23290 0.87137 1.03050 0.95732 1.63177 1.05166 1.28348 1.27017 1.22051 0.92437 0.91278 1.02458 1.20632 0.89511 0.84271 0.82444 1.90470 1.72667 1.28258 1.58335 1.41940 1.09254 1.10863 1.59287 1.19709 0.85587 0.97258 1.43392 0.90097 1.26056 1.04585 0.94207 0.96630 1.69690 1.38709 1.00903 1.47044 0.84854 0.76921 0.78301 0.78153 1.19634 1.19752 1.19714 1.23588 0.98559 1.00011 0.88119 1.23005 0.91666 0.99370 0.81456 0.87831 1.86450 1.53436 1.78741 1.18851 1.75071 1.02448 1.15610 1.18655 0.85133 0.85049 0.83799 0.73822 0.88567 0.90949 0.87164 0.91316 0.77131 0.91390 0.90050 0.93638 0.74571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.01 11.62 127.77 1.49 1.49 16 2 N -0.11 -1.57 4.39 -206.59 -0.91 -2.47 16 3 N -0.06 -1.04 13.23 37.02 0.49 -0.56 16 4 N -0.26 -5.56 12.26 -52.36 -0.64 -6.20 16 5 C 0.12 2.67 8.14 137.15 1.12 3.78 16 6 C 0.62 15.67 7.83 86.83 0.68 16.35 16 7 O -0.54 -17.02 16.82 -3.83 -0.06 -17.09 16 8 N -0.68 -14.14 5.13 -439.66 -2.25 -16.39 16 9 C 0.14 3.30 2.97 46.17 0.14 3.44 16 10 H 0.10 2.58 7.69 -2.38 -0.02 2.56 16 11 C 0.04 0.93 6.61 86.65 0.57 1.51 16 12 N -0.51 -16.30 4.86 -890.11 -4.33 -20.63 16 13 C 0.05 1.74 5.05 85.56 0.43 2.17 16 14 C 0.44 21.15 7.58 87.66 0.66 21.81 16 15 O -0.61 -33.15 14.61 -3.07 -0.04 -33.20 16 16 N -0.58 -29.78 5.29 -306.99 -1.62 -31.40 16 17 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 18 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16 19 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 20 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 21 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 C 0.03 0.77 5.48 86.77 0.48 1.24 16 26 C 0.11 2.30 4.03 31.98 0.13 2.43 16 27 H 0.10 1.85 8.00 -2.38 -0.02 1.83 16 28 O -0.57 -11.65 13.47 -148.98 -2.01 -13.66 16 29 N -0.26 -5.48 12.17 -52.32 -0.64 -6.12 16 30 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.14 -0.70 8.14 -2.38 -0.02 -0.72 16 33 H 0.42 7.10 8.27 -92.71 -0.77 6.33 16 34 H 0.10 2.29 8.03 -2.39 -0.02 2.27 16 35 H 0.07 1.84 7.55 -2.39 -0.02 1.82 16 36 H 0.11 3.49 8.03 -2.39 -0.02 3.47 16 37 H 0.07 2.23 7.85 -2.39 -0.02 2.21 16 38 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 39 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.08 2.77 7.38 -2.39 -0.02 2.76 16 41 H 0.05 1.44 7.62 -2.39 -0.02 1.43 16 42 H 0.40 5.02 9.12 -74.06 -0.68 4.35 16 Total: -1.00 -80.80 367.97 -3.79 -84.58 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -1.05 Total: 32.07 kcal Atomic # 6 Polarization: 28.93 SS G_CDS: 6.97 Total: 35.90 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -9.62 Total: -133.82 kcal Atomic # 8 Polarization: -61.83 SS G_CDS: -2.12 Total: -63.94 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -80.80 -3.79 -84.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195365652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.690 kcal (2) G-P(sol) polarization free energy of solvation -80.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds