Wall clock time and date at job start Sat Apr 11 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36407 * 125.09896 * 2 1 4 4 C 1.34614 * 109.89590 * 179.97438 * 3 2 1 5 5 C 1.45918 * 107.05332 * 0.02562 * 4 3 2 6 6 N 1.33526 * 134.88311 * 180.02562 * 5 4 3 7 7 C 1.31600 * 120.37129 * 180.02562 * 6 5 4 8 8 Cl 1.73594 * 118.84603 * 180.02562 * 7 6 5 9 9 N 1.32267 * 122.30412 * 359.97398 * 7 6 5 10 10 C 1.32753 * 121.37077 * 0.02751 * 9 7 6 11 11 O 1.35530 * 120.67304 * 179.97438 * 10 9 7 12 12 C 1.42902 * 117.00154 * 359.97438 * 11 10 9 13 13 H 1.09002 * 109.46650 * 30.00093 * 12 11 10 14 14 C 1.50697 * 109.46889 * 270.00232 * 12 11 10 15 15 H 1.07998 * 119.99851 * 122.25375 * 14 12 11 16 16 C 1.37877 * 120.00156 * 302.24703 * 14 12 11 17 17 N 1.31515 * 119.99804 * 6.06723 * 16 14 12 18 18 Si 1.86800 * 120.00116 * 185.79278 * 16 14 12 19 19 H 1.48500 * 109.47016 * 89.99717 * 18 16 14 20 20 H 1.48497 * 109.47183 * 210.00055 * 18 16 14 21 21 H 1.48502 * 109.46962 * 329.99949 * 18 16 14 22 22 C 1.53001 * 109.46861 * 150.00238 * 12 11 10 23 23 N 1.46898 * 109.46939 * 293.12937 * 22 12 11 24 24 C 1.46900 * 109.47648 * 65.84513 * 23 22 12 25 25 C 1.46903 * 109.46997 * 185.84370 * 23 22 12 26 26 C 1.46897 * 109.47324 * 305.84180 * 23 22 12 27 27 C 1.37595 * 125.09993 * 180.25208 * 2 1 3 28 28 H 1.08992 * 109.47350 * 90.02227 * 1 2 3 29 29 H 1.09008 * 109.47057 * 210.02241 * 1 2 3 30 30 H 1.09003 * 109.47350 * 330.01796 * 1 2 3 31 31 H 1.07991 * 125.05177 * 359.96372 * 3 2 1 32 32 H 1.07993 * 126.47661 * 180.02562 * 4 3 2 33 33 H 0.97001 * 120.00227 * 5.20717 * 17 16 14 34 34 H 1.09000 * 109.47311 * 53.12618 * 22 12 11 35 35 H 1.08995 * 109.46909 * 173.13073 * 22 12 11 36 36 H 1.09004 * 109.46852 * 49.84690 * 24 23 22 37 37 H 1.08996 * 109.47445 * 169.84784 * 24 23 22 38 38 H 1.08992 * 109.47037 * 289.85417 * 24 23 22 39 39 H 1.09004 * 109.46815 * 60.00025 * 25 23 22 40 40 H 1.08996 * 109.47073 * 179.97438 * 25 23 22 41 41 H 1.08992 * 109.47488 * 300.00211 * 25 23 22 42 42 H 1.09008 * 109.47135 * 60.00350 * 26 23 22 43 43 H 1.08996 * 109.47378 * 180.02562 * 26 23 22 44 44 H 1.08996 * 109.47577 * 300.00687 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2493 1.1160 0.0000 4 6 3.5484 0.7630 0.0006 5 6 3.5955 -0.6954 0.0003 6 7 4.5715 -1.6066 0.0011 7 6 4.2830 -2.8906 0.0001 8 17 5.5830 -4.0411 0.0017 9 7 3.0373 -3.3352 -0.0012 10 6 2.0055 -2.5000 -0.0021 11 8 0.7347 -2.9711 -0.0039 12 6 0.5689 -4.3905 -0.0054 13 1 1.4102 -4.8550 0.5090 14 6 0.5122 -4.8880 -1.4267 15 1 1.2228 -5.6257 -1.7693 16 6 -0.4468 -4.4017 -2.2897 17 7 -1.2349 -3.4194 -1.9108 18 14 -0.6217 -5.1329 -3.9997 19 1 -1.5861 -6.2614 -3.9592 20 1 -1.1173 -4.0915 -4.9350 21 1 0.6994 -5.6272 -4.4641 22 6 -0.7319 -4.7527 0.7141 23 7 -0.6134 -4.4160 2.1391 24 6 -0.4991 -2.9592 2.2902 25 6 -1.8052 -4.8904 2.8550 26 6 0.5823 -5.0615 2.6971 27 6 2.2562 -1.1257 -0.0050 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5136 31 1 1.8826 2.1318 -0.0006 32 1 4.3956 1.4326 0.0011 33 1 -1.0930 -2.9864 -1.0544 34 1 -1.5578 -4.1924 0.2758 35 1 -0.9206 -5.8210 0.6077 36 1 -1.2910 -2.4717 1.7216 37 1 -0.5924 -2.6947 3.3434 38 1 0.4709 -2.6304 1.9175 39 1 -1.8900 -5.9713 2.7430 40 1 -1.7171 -4.6409 3.9124 41 1 -2.6925 -4.4115 2.4411 42 1 1.4667 -4.7094 2.1658 43 1 0.6700 -4.8120 3.7545 44 1 0.4975 -6.1424 2.5850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227790414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:14 Heat of formation + Delta-G solvation = 153.593338 kcal Electronic energy + Delta-G solvation = -29617.103889 eV Core-core repulsion = 25715.793403 eV Total energy + Delta-G solvation = -3901.310486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.32986 -42.79328 -40.33917 -39.33204 -37.75248 -35.75894 -34.34758 -32.72487 -31.96924 -30.74422 -29.78360 -29.68284 -27.79162 -27.46190 -25.55802 -24.79090 -24.32715 -22.59991 -21.63890 -20.16935 -19.57610 -19.37705 -18.19188 -18.05604 -17.77425 -17.66603 -17.27946 -16.74840 -15.98869 -15.94217 -15.75229 -15.33432 -15.09226 -14.68572 -14.46040 -14.23184 -14.06243 -13.87355 -13.64457 -13.56446 -13.44464 -13.41287 -13.34754 -13.29091 -13.11942 -12.98555 -12.80242 -12.56861 -12.50842 -12.25082 -12.18902 -11.82539 -11.62866 -10.87166 -10.66248 -10.47951 -9.82907 -8.99160 -8.71263 -6.66051 -0.27233 -0.09802 0.34148 0.75356 1.41825 1.49602 1.57008 1.63921 1.66645 1.77410 2.34497 2.59775 2.62755 2.82069 2.86609 2.89935 3.07510 3.34381 3.41653 3.62171 3.78999 3.86927 3.93680 4.03206 4.10437 4.12461 4.23374 4.29727 4.34091 4.35826 4.40222 4.48896 4.56411 4.59459 4.68062 4.71500 4.74050 4.83802 5.00182 5.16459 5.52110 5.61114 5.71240 5.96567 6.07455 6.16241 6.52051 6.84741 7.09224 8.64981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.448 5.448 3 C 0.114 3.886 4 C -0.217 4.217 5 C 0.119 3.881 6 N -0.520 5.520 7 C 0.361 3.639 8 Cl 0.021 6.979 9 N -0.561 5.561 10 C 0.412 3.588 11 O -0.299 6.299 12 C 0.171 3.829 13 H 0.085 0.915 14 C -0.622 4.622 15 H 0.043 0.957 16 C 0.030 3.970 17 N -0.894 5.894 18 Si 1.073 2.927 19 H -0.265 1.265 20 H -0.298 1.298 21 H -0.297 1.297 22 C 0.016 3.984 23 N -0.259 5.259 24 C -0.049 4.049 25 C -0.045 4.045 26 C -0.052 4.052 27 C -0.047 4.047 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.233 0.767 32 H 0.174 0.826 33 H 0.287 0.713 34 H 0.122 0.878 35 H 0.149 0.851 36 H 0.117 0.883 37 H 0.150 0.850 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.085 0.915 43 H 0.149 0.851 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.500 1.963 19.994 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.129 5.129 3 C -0.018 4.018 4 C -0.242 4.242 5 C -0.016 4.016 6 N -0.242 5.242 7 C 0.064 3.936 8 Cl 0.048 6.952 9 N -0.297 5.297 10 C 0.217 3.783 11 O -0.204 6.204 12 C 0.117 3.883 13 H 0.103 0.897 14 C -0.660 4.660 15 H 0.061 0.939 16 C -0.179 4.179 17 N -0.530 5.530 18 Si 0.901 3.099 19 H -0.190 1.190 20 H -0.225 1.225 21 H -0.223 1.223 22 C -0.105 4.105 23 N 0.084 4.916 24 C -0.191 4.191 25 C -0.185 4.185 26 C -0.193 4.193 27 C -0.159 4.159 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.250 0.750 32 H 0.192 0.808 33 H 0.101 0.899 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.135 0.865 37 H 0.168 0.832 38 H 0.106 0.894 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.137 0.863 42 H 0.104 0.896 43 H 0.167 0.833 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.240 1.448 18.657 20.870 hybrid contribution 1.115 -0.105 0.155 1.131 sum -8.125 1.344 18.812 20.536 Atomic orbital electron populations 1.22418 0.73840 1.06476 1.04162 1.43901 1.07644 1.02791 1.58571 1.22907 0.88873 0.92975 0.97007 1.21793 0.98353 0.88777 1.15298 1.20470 0.85715 0.95692 0.99695 1.67265 1.37508 1.00287 1.19189 1.22275 0.86716 0.86858 0.97707 1.98409 1.44263 1.56111 1.96395 1.67448 0.98571 1.38616 1.25104 1.18824 0.85712 0.85439 0.88344 1.86393 1.19127 1.29899 1.84946 1.20682 0.94601 0.76075 0.96930 0.89727 1.22232 1.19042 1.27635 0.97075 0.93881 1.26030 0.92266 0.94744 1.04874 1.70954 1.37903 1.20081 1.24109 0.83384 0.76259 0.76238 0.74049 1.19021 1.22486 1.22344 1.24224 1.01935 1.07319 0.77056 1.46017 1.16323 1.15119 1.14189 1.24379 1.07824 0.77606 1.09242 1.24328 0.86342 1.06250 1.01561 1.24269 0.87027 1.03530 1.04486 1.18978 0.93655 0.88101 1.15201 0.91890 0.89052 0.85369 0.75041 0.80824 0.89947 0.86033 0.83367 0.86471 0.83178 0.89370 0.85432 0.83673 0.86259 0.89606 0.83329 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.45 10.82 127.77 1.38 0.93 16 2 N -0.45 0.04 3.17 -538.87 -1.71 -1.67 16 3 C 0.11 -0.41 11.29 83.15 0.94 0.53 16 4 C -0.22 -0.66 11.07 23.43 0.26 -0.40 16 5 C 0.12 1.33 7.57 41.47 0.31 1.65 16 6 N -0.52 -8.06 10.46 -180.95 -1.89 -9.95 16 7 C 0.36 5.25 8.17 180.80 1.48 6.73 16 8 Cl 0.02 0.24 29.26 -2.72 -0.08 0.16 16 9 N -0.56 -7.14 8.76 -303.35 -2.66 -9.80 16 10 C 0.41 3.80 6.76 84.91 0.57 4.37 16 11 O -0.30 -1.22 3.64 -88.33 -0.32 -1.54 16 12 C 0.17 0.58 1.59 29.85 0.05 0.63 16 13 H 0.09 0.23 4.70 -2.39 -0.01 0.22 16 14 C -0.62 -10.78 8.88 25.60 0.23 -10.55 16 15 H 0.04 1.01 7.82 -2.91 -0.02 0.98 16 16 C 0.03 0.61 5.22 84.65 0.44 1.05 16 17 N -0.89 -17.22 12.82 21.45 0.27 -16.95 16 18 Si 1.07 21.79 29.91 68.60 2.05 23.84 16 19 H -0.27 -4.72 7.11 99.48 0.71 -4.01 16 20 H -0.30 -7.02 7.11 99.48 0.71 -6.32 16 21 H -0.30 -6.71 7.11 99.48 0.71 -6.00 16 22 C 0.02 -0.16 3.52 86.30 0.30 0.15 16 23 N -0.26 5.90 0.05 ******* -0.07 5.83 16 24 C -0.05 1.07 6.69 127.69 0.85 1.93 16 25 C -0.05 1.36 7.99 127.69 1.02 2.38 16 26 C -0.05 1.20 7.49 127.69 0.96 2.16 16 27 C -0.05 -0.37 6.86 39.19 0.27 -0.10 16 28 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.09 -0.74 5.74 -2.38 -0.01 -0.75 16 30 H 0.13 -1.85 8.14 -2.39 -0.02 -1.87 16 31 H 0.23 -3.22 8.06 -2.92 -0.02 -3.24 16 32 H 0.17 -0.05 8.06 -2.91 -0.02 -0.08 16 33 H 0.29 3.72 4.84 -92.71 -0.45 3.27 16 34 H 0.12 -0.70 5.87 -2.39 -0.01 -0.72 16 35 H 0.15 -1.76 8.06 -2.39 -0.02 -1.78 16 36 H 0.12 -2.48 7.29 -2.38 -0.02 -2.50 16 37 H 0.15 -4.46 7.99 -2.39 -0.02 -4.48 16 38 H 0.09 -1.23 5.04 -2.39 -0.01 -1.25 16 39 H 0.13 -3.98 8.11 -2.38 -0.02 -4.00 16 40 H 0.15 -5.15 8.07 -2.39 -0.02 -5.17 16 41 H 0.12 -3.52 8.14 -2.39 -0.02 -3.54 16 42 H 0.09 -1.24 5.83 -2.38 -0.01 -1.26 16 43 H 0.15 -4.42 8.14 -2.39 -0.02 -4.44 16 44 H 0.13 -3.39 8.14 -2.39 -0.02 -3.41 16 Total: 0.00 -55.07 359.44 6.01 -49.06 By element: Atomic # 1 Polarization: -51.77 SS G_CDS: 1.35 Total: -50.42 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 9.06 Total: 11.44 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: -6.05 Total: -32.54 kcal Atomic # 8 Polarization: -1.22 SS G_CDS: -0.32 Total: -1.54 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: 2.05 Total: 23.84 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -55.07 6.01 -49.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227790414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.655 kcal (2) G-P(sol) polarization free energy of solvation -55.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds