Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38408 * 126.42704 * 2 1 4 4 C 1.38743 * 134.22493 * 0.02562 * 3 2 1 5 5 C 1.38523 * 118.23906 * 179.75101 * 4 3 2 6 6 C 1.38644 * 119.44066 * 0.49117 * 5 4 3 7 7 Cl 1.73600 * 119.31527 * 179.77249 * 6 5 4 8 8 N 1.31691 * 121.36950 * 359.49117 * 6 5 4 9 9 C 1.33150 * 121.50440 * 0.25831 * 8 6 5 10 10 N 1.35697 * 133.17244 * 179.97438 * 9 8 6 11 11 C 1.30893 * 109.75547 * 180.02562 * 10 9 8 12 12 O 1.35219 * 125.03170 * 179.97438 * 11 10 9 13 13 C 1.42901 * 116.99827 * 354.88116 * 12 11 10 14 14 H 1.09000 * 109.47159 * 335.00753 * 13 12 11 15 15 C 1.50699 * 109.46882 * 215.00706 * 13 12 11 16 16 H 1.08007 * 120.00054 * 354.65594 * 15 13 12 17 17 C 1.37879 * 119.99970 * 174.64858 * 15 13 12 18 18 N 1.31512 * 120.00190 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99886 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47196 * 90.00095 * 19 17 15 21 21 H 1.48494 * 109.47217 * 210.00333 * 19 17 15 22 22 H 1.48503 * 109.47242 * 330.00586 * 19 17 15 23 23 C 1.52998 * 109.47231 * 95.00787 * 13 12 11 24 24 N 1.46910 * 109.46842 * 53.92375 * 23 13 12 25 25 C 1.46896 * 109.47166 * 62.20739 * 24 23 13 26 26 C 1.46901 * 109.47031 * 182.20635 * 24 23 13 27 27 C 1.46895 * 109.47042 * 302.20612 * 24 23 13 28 28 H 1.09000 * 109.46831 * 269.97332 * 1 2 3 29 29 H 1.08996 * 109.46958 * 29.96938 * 1 2 3 30 30 H 1.08997 * 109.47299 * 149.96979 * 1 2 3 31 31 H 1.08001 * 120.88262 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.27977 * 180.24527 * 5 4 3 33 33 H 0.96996 * 120.00034 * 180.02562 * 18 17 15 34 34 H 1.08997 * 109.46861 * 173.92082 * 23 13 12 35 35 H 1.08996 * 109.47365 * 293.92814 * 23 13 12 36 36 H 1.09004 * 109.47176 * 43.53796 * 25 24 23 37 37 H 1.08993 * 109.47400 * 163.53698 * 25 24 23 38 38 H 1.08997 * 109.47347 * 283.53762 * 25 24 23 39 39 H 1.08999 * 109.47092 * 59.99662 * 26 24 23 40 40 H 1.08998 * 109.47332 * 180.02562 * 26 24 23 41 41 H 1.09000 * 109.47093 * 300.00556 * 26 24 23 42 42 H 1.08998 * 109.47127 * 78.96110 * 27 24 23 43 43 H 1.08998 * 109.46970 * 198.96253 * 27 24 23 44 44 H 1.09000 * 109.47316 * 318.95958 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2869 1.1136 0.0000 4 6 2.0615 2.4827 0.0004 5 6 3.1592 3.3276 0.0056 6 6 4.4357 2.7865 -0.0003 7 17 5.8090 3.8485 0.0002 8 7 4.6280 1.4837 -0.0007 9 6 3.6066 0.6296 -0.0006 10 7 3.5292 -0.7252 -0.0013 11 6 2.2741 -1.0966 -0.0013 12 8 1.8440 -2.3786 -0.0025 13 6 2.8400 -3.3969 -0.1174 14 1 3.7197 -2.9901 -0.6163 15 6 2.2923 -4.5466 -0.9230 16 1 1.2583 -4.5431 -1.2352 17 6 3.1111 -5.6030 -1.2617 18 7 4.3699 -5.6075 -0.8812 19 14 2.4322 -7.0278 -2.2609 20 1 2.6121 -6.7476 -3.7080 21 1 3.1582 -8.2730 -1.9039 22 1 0.9866 -7.1955 -1.9652 23 6 3.2278 -3.8908 1.2778 24 7 2.0196 -4.3043 2.0041 25 6 1.3818 -5.4227 1.2968 26 6 2.3858 -4.7288 3.3619 27 6 1.0832 -3.1751 2.0799 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5143 31 1 1.0569 2.8791 0.0005 32 1 3.0218 4.3988 0.0101 33 1 4.9460 -6.3505 -1.1198 34 1 3.9057 -4.7394 1.1873 35 1 3.7223 -3.0871 1.8233 36 1 2.1439 -6.1359 0.9827 37 1 0.6739 -5.9169 1.9620 38 1 0.8544 -5.0452 0.4208 39 1 2.8591 -3.8990 3.8868 40 1 1.4895 -5.0361 3.9007 41 1 3.0807 -5.5667 3.3057 42 1 0.5568 -3.0753 1.1307 43 1 0.3627 -3.3535 2.8781 44 1 1.6354 -2.2584 2.2872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231041594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = 170.667715 kcal Electronic energy + Delta-G solvation = -28725.454873 eV Core-core repulsion = 24824.884787 eV Total energy + Delta-G solvation = -3900.570085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.62999 -42.80596 -40.17424 -38.78154 -37.43889 -35.53148 -35.49863 -33.11120 -31.76896 -30.27343 -29.71421 -29.49501 -28.09671 -27.79908 -25.29702 -24.54642 -24.05014 -23.09790 -21.74751 -19.97096 -19.26000 -18.77330 -18.13086 -18.01292 -17.78908 -17.54100 -17.38765 -16.75779 -16.61080 -15.79220 -15.76612 -15.15198 -15.07158 -14.66279 -14.46716 -14.14963 -14.02886 -13.90494 -13.65277 -13.48193 -13.42703 -13.40193 -13.24885 -13.00205 -12.85105 -12.73005 -12.66201 -12.42906 -12.36884 -12.16736 -11.98778 -11.85239 -11.63111 -11.27506 -10.75364 -10.39093 -9.86883 -9.31616 -8.52446 -6.61435 -0.31763 -0.06507 0.64779 0.71006 1.05765 1.36442 1.49535 1.50272 1.56052 2.14087 2.34979 2.60198 2.73602 2.80807 2.98734 3.14090 3.17671 3.43410 3.66175 3.82279 3.88697 3.94281 4.00488 4.16459 4.20127 4.30337 4.36691 4.43416 4.44672 4.59422 4.62930 4.65066 4.71034 4.73496 4.74892 4.79226 4.88704 4.93399 5.01011 5.15060 5.24028 5.39400 5.52626 5.58155 6.18648 6.32345 6.50482 6.81147 7.07385 8.52397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.470 5.470 3 C -0.005 4.005 4 C -0.021 4.021 5 C -0.146 4.146 6 C 0.182 3.818 7 Cl -0.031 7.031 8 N -0.497 5.497 9 C 0.259 3.741 10 N -0.566 5.566 11 C 0.493 3.507 12 O -0.273 6.273 13 C 0.214 3.786 14 H 0.047 0.953 15 C -0.538 4.538 16 H 0.095 0.905 17 C 0.054 3.946 18 N -0.896 5.896 19 Si 0.936 3.064 20 H -0.304 1.304 21 H -0.292 1.292 22 H -0.239 1.239 23 C 0.005 3.995 24 N -0.244 5.244 25 C -0.034 4.034 26 C -0.045 4.045 27 C -0.038 4.038 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.194 0.806 32 H 0.189 0.811 33 H 0.275 0.725 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.147 0.853 41 H 0.110 0.890 42 H 0.125 0.875 43 H 0.146 0.854 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.788 3.185 13.948 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.170 5.170 3 C -0.116 4.116 4 C -0.050 4.050 5 C -0.169 4.169 6 C 0.008 3.992 7 Cl -0.002 7.002 8 N -0.211 5.211 9 C 0.016 3.984 10 N -0.306 5.306 11 C 0.189 3.811 12 O -0.176 6.176 13 C 0.158 3.842 14 H 0.065 0.935 15 C -0.575 4.575 16 H 0.113 0.887 17 C -0.151 4.151 18 N -0.532 5.532 19 Si 0.763 3.237 20 H -0.231 1.231 21 H -0.218 1.218 22 H -0.162 1.162 23 C -0.118 4.118 24 N 0.098 4.902 25 C -0.175 4.175 26 C -0.185 4.185 27 C -0.179 4.179 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.211 0.789 32 H 0.206 0.794 33 H 0.085 0.915 34 H 0.152 0.848 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.165 0.835 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.164 0.836 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.405 2.013 13.972 20.169 hybrid contribution -0.016 -0.124 -1.316 1.322 sum -14.421 1.889 12.655 19.279 Atomic orbital electron populations 1.22555 0.71760 1.06877 1.06075 1.44762 1.08669 1.01472 1.62069 1.19682 0.91367 0.90882 1.09682 1.20838 1.01921 0.86713 0.95480 1.21933 0.88586 1.03391 1.02995 1.21638 0.89391 0.87736 1.00467 1.98419 1.44725 1.60561 1.96525 1.65742 1.36110 1.03045 1.16251 1.18899 0.87357 0.90072 1.02035 1.70502 1.17128 1.10794 1.32181 1.20885 0.83309 0.84559 0.92337 1.86225 1.37240 1.07498 1.86663 1.20370 0.88436 0.82725 0.92663 0.93531 1.21109 0.98966 1.01313 1.36151 0.88700 1.25164 0.94446 1.00077 0.95364 1.69836 1.05669 1.33026 1.44627 0.85861 0.80364 0.78844 0.78602 1.23124 1.21788 1.16182 1.24102 0.87382 1.05363 0.94971 1.45628 1.14158 1.15607 1.14807 1.24529 1.01878 0.89342 1.01752 1.24256 1.08037 1.05942 0.80310 1.24400 0.95450 0.88736 1.09285 0.87506 0.87488 0.87862 0.78896 0.79421 0.91510 0.84788 0.88223 0.89029 0.85152 0.85274 0.86627 0.83473 0.87142 0.85705 0.83615 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.90 11.13 127.77 1.42 0.52 16 2 N -0.47 1.14 3.22 -655.11 -2.11 -0.97 16 3 C -0.01 -0.01 6.89 38.79 0.27 0.26 16 4 C -0.02 0.09 10.17 22.46 0.23 0.32 16 5 C -0.15 0.20 9.86 22.43 0.22 0.42 16 6 C 0.18 1.37 7.26 84.81 0.62 1.99 16 7 Cl -0.03 -0.21 29.09 -2.72 -0.08 -0.28 16 8 N -0.50 -7.27 10.39 -184.87 -1.92 -9.19 16 9 C 0.26 3.13 8.37 134.28 1.12 4.26 16 10 N -0.57 -7.11 10.06 -311.38 -3.13 -10.25 16 11 C 0.49 1.74 7.79 179.75 1.40 3.14 16 12 O -0.27 0.22 5.42 -85.00 -0.46 -0.24 16 13 C 0.21 1.13 2.18 29.85 0.07 1.19 16 14 H 0.05 0.81 7.15 -2.39 -0.02 0.80 16 15 C -0.54 -4.49 5.33 25.60 0.14 -4.35 16 16 H 0.10 0.59 6.97 -2.91 -0.02 0.57 16 17 C 0.05 0.75 4.10 84.66 0.35 1.10 16 18 N -0.90 -16.54 11.71 21.45 0.25 -16.29 16 19 Si 0.94 12.18 29.54 68.60 2.03 14.20 16 20 H -0.30 -5.81 7.11 99.48 0.71 -5.11 16 21 H -0.29 -4.54 7.11 99.48 0.71 -3.83 16 22 H -0.24 -2.01 7.11 99.48 0.71 -1.31 16 23 C 0.00 -0.02 4.08 86.30 0.35 0.33 16 24 N -0.24 4.05 0.05 ******* -0.07 3.99 16 25 C -0.03 0.50 6.87 127.69 0.88 1.37 16 26 C -0.04 1.05 7.89 127.69 1.01 2.06 16 27 C -0.04 0.76 6.96 127.69 0.89 1.64 16 28 H 0.11 -2.02 8.14 -2.39 -0.02 -2.04 16 29 H 0.11 -1.74 8.14 -2.39 -0.02 -1.76 16 30 H 0.10 -1.48 8.13 -2.39 -0.02 -1.50 16 31 H 0.19 -2.71 8.06 -2.91 -0.02 -2.74 16 32 H 0.19 -1.58 8.06 -2.91 -0.02 -1.61 16 33 H 0.28 5.50 8.31 -92.71 -0.77 4.73 16 34 H 0.13 0.20 6.22 -2.39 -0.01 0.18 16 35 H 0.10 -0.41 8.05 -2.39 -0.02 -0.43 16 36 H 0.09 -0.70 6.43 -2.38 -0.02 -0.72 16 37 H 0.13 -3.01 7.86 -2.39 -0.02 -3.03 16 38 H 0.13 -1.38 4.68 -2.39 -0.01 -1.39 16 39 H 0.12 -2.77 8.14 -2.39 -0.02 -2.79 16 40 H 0.15 -4.41 7.89 -2.39 -0.02 -4.42 16 41 H 0.11 -2.36 8.14 -2.39 -0.02 -2.38 16 42 H 0.12 -2.16 5.36 -2.39 -0.01 -2.17 16 43 H 0.15 -4.14 7.81 -2.39 -0.02 -4.16 16 44 H 0.09 -1.47 6.93 -2.39 -0.02 -1.48 16 Total: 0.00 -45.85 360.12 4.48 -41.37 By element: Atomic # 1 Polarization: -37.60 SS G_CDS: 1.02 Total: -36.58 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 8.95 Total: 14.24 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: -6.98 Total: -32.71 kcal Atomic # 8 Polarization: 0.22 SS G_CDS: -0.46 Total: -0.24 kcal Atomic # 14 Polarization: 12.18 SS G_CDS: 2.03 Total: 14.20 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.08 Total: -0.28 kcal Total: -45.85 4.48 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231041594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.036 kcal (2) G-P(sol) polarization free energy of solvation -45.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds