Wall clock time and date at job start Sat Apr 11 2020 05:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99861 * 2 1 4 4 C 1.53005 * 109.47342 * 66.04669 * 3 2 1 5 5 C 1.52997 * 109.47452 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.46983 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99566 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00423 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 6 11 11 C 1.33384 * 125.20349 * 89.99907 * 10 9 7 12 12 C 1.38424 * 114.92035 * 179.97438 * 11 10 9 13 13 C 1.33386 * 114.92099 * 359.97438 * 12 11 10 14 14 S 1.75881 * 125.19973 * 269.69178 * 10 9 7 15 15 C 1.46893 * 110.99979 * 236.04639 * 2 1 3 16 16 C 1.50707 * 109.47092 * 293.95241 * 15 2 1 17 17 O 1.21286 * 119.99899 * 0.02562 * 16 15 2 18 18 N 1.34777 * 119.99765 * 180.02562 * 16 15 2 19 19 C 1.37096 * 119.99782 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00102 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00101 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00008 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47315 * 89.99963 * 23 21 19 25 25 H 1.48498 * 109.47071 * 210.00298 * 23 21 19 26 26 H 1.48508 * 109.46775 * 330.00047 * 23 21 19 27 27 H 1.08996 * 109.46896 * 59.99693 * 1 2 3 28 28 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47001 * 299.99914 * 1 2 3 30 30 H 1.08998 * 109.47764 * 306.04216 * 3 2 1 31 31 H 1.09002 * 109.46774 * 186.04034 * 3 2 1 32 32 H 1.09001 * 109.46812 * 59.99568 * 4 3 2 33 33 H 1.09002 * 109.46935 * 299.99910 * 4 3 2 34 34 H 1.09001 * 109.46832 * 59.99801 * 5 4 3 35 35 H 1.09002 * 109.47153 * 299.99992 * 5 4 3 36 36 H 0.96995 * 120.00423 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 38 38 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 39 39 H 1.08005 * 122.54108 * 359.95242 * 11 10 9 40 40 H 1.08005 * 122.53921 * 180.02562 * 12 11 10 41 41 H 1.08002 * 125.20183 * 180.02562 * 13 12 11 42 42 H 1.08993 * 109.47389 * 53.95625 * 15 2 1 43 43 H 1.09000 * 109.47081 * 173.95497 * 15 2 1 44 44 H 0.97006 * 120.00287 * 359.97438 * 18 16 15 45 45 H 0.96996 * 120.00410 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3183 5 6 2.1803 3.4856 1.3186 6 7 1.8312 4.1426 2.5806 7 6 2.2126 5.4156 2.8056 8 8 2.8452 6.0170 1.9635 9 6 1.8540 6.0913 4.1040 10 6 2.3945 7.4981 4.1042 11 6 1.7406 8.5731 3.6616 12 6 2.4396 9.7636 3.7627 13 6 3.6610 9.6554 4.2878 14 16 3.9811 7.9745 4.6951 15 6 1.9954 -0.7659 -1.1375 16 6 1.6369 -2.2204 -0.9728 17 8 1.0047 -2.5831 -0.0034 18 7 2.0189 -3.1181 -1.9027 19 6 1.6923 -4.4412 -1.7531 20 1 1.1293 -4.7642 -0.8899 21 6 2.0857 -5.3666 -2.7120 22 7 2.7702 -4.9736 -3.7626 23 14 1.6413 -7.1695 -2.5078 24 1 0.3291 -7.4319 -3.1515 25 1 2.6837 -8.0117 -3.1476 26 1 1.5580 -7.4980 -1.0620 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5612 1.9274 -0.8309 31 1 3.0797 1.3443 -0.1081 32 1 2.0658 1.5015 2.1492 33 1 0.5472 2.0845 1.4265 34 1 1.7463 4.0418 0.4876 35 1 3.2646 3.4583 1.2105 36 1 1.3250 3.6618 3.2539 37 1 0.7697 6.1183 4.2122 38 1 2.2884 5.5355 4.9350 39 1 0.7415 8.5188 3.2549 40 1 2.0270 10.7086 3.4415 41 1 4.3469 10.4751 4.4429 42 1 1.5612 -0.3872 -2.0627 43 1 3.0797 -0.6611 -1.1756 44 1 2.5243 -2.8280 -2.6782 45 1 3.0452 -5.6196 -4.4318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231242804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:33 Heat of formation + Delta-G solvation = -36.087043 kcal Electronic energy + Delta-G solvation = -25177.431068 eV Core-core repulsion = 21321.709301 eV Total energy + Delta-G solvation = -3855.721766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08808 -38.69145 -38.01128 -36.93024 -35.23638 -33.86181 -32.80446 -31.47305 -31.19244 -28.05094 -27.61587 -26.21010 -24.75295 -23.68657 -22.62836 -21.25853 -20.48666 -19.58730 -19.14890 -17.85502 -17.65238 -17.30094 -16.39192 -16.23706 -15.85814 -15.65714 -15.26296 -14.96742 -14.64399 -14.45364 -14.09958 -13.74100 -13.53700 -13.45962 -13.24965 -13.12745 -12.92615 -12.73408 -12.34053 -12.14230 -11.93434 -11.85592 -11.71659 -11.47682 -11.25903 -11.24932 -11.07538 -10.92457 -10.74010 -10.39055 -10.23409 -10.20674 -9.47651 -9.35814 -9.00181 -8.75488 -8.45620 -7.97749 -7.85827 -6.41441 -3.82293 0.64612 1.30785 1.67678 2.33149 2.38735 2.93045 3.17727 3.26469 3.32293 3.90724 3.98361 4.17771 4.24338 4.52394 4.65840 4.74810 4.80547 4.93111 4.95172 5.04020 5.08846 5.22754 5.24808 5.25607 5.39960 5.50037 5.58331 5.69576 5.73269 5.75936 5.91671 5.94097 5.96901 5.99064 6.07042 6.14145 6.16116 6.28770 6.54547 7.16406 7.25999 7.38493 7.55366 7.91317 8.06712 8.62243 9.18419 9.54927 10.06777 10.76314 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.042917 B = 0.001343 C = 0.001336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.266938 B =20846.702305 C =20959.228718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.127 4.127 5 C 0.121 3.879 6 N -0.729 5.729 7 C 0.511 3.489 8 O -0.528 6.528 9 C -0.071 4.071 10 C -0.159 4.159 11 C -0.128 4.128 12 C -0.134 4.134 13 C -0.214 4.214 14 S 0.108 5.892 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 H 0.013 0.987 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 27.261 14.657 30.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.165 4.165 5 C -0.003 4.003 6 N -0.382 5.382 7 C 0.296 3.704 8 O -0.403 6.403 9 C -0.113 4.113 10 C -0.277 4.277 11 C -0.159 4.159 12 C -0.164 4.164 13 C -0.350 4.350 14 S 0.372 5.628 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 H 0.032 0.968 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.236 0.764 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.181 0.819 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.525 26.340 15.593 30.614 hybrid contribution -1.499 0.236 -1.648 2.240 sum -0.973 26.575 13.946 30.028 Atomic orbital electron populations 1.22575 0.86879 1.04437 0.98863 1.61545 1.08667 1.11230 1.42834 1.22005 1.00471 0.88949 0.95697 1.21776 1.01740 0.93436 0.99575 1.21344 1.00726 0.92687 0.85580 1.45997 1.58040 1.13705 1.20432 1.20475 0.79602 0.81596 0.88742 1.90749 1.38900 1.64206 1.46472 1.20161 1.03260 0.91035 0.96860 1.23770 0.98051 0.97822 1.08073 1.20066 1.01841 0.91511 1.02432 1.20130 0.94474 0.99349 1.02462 1.25610 1.01289 0.99478 1.08600 1.84251 1.15634 1.01648 1.61258 1.21864 1.00705 0.94144 0.91854 1.19738 0.85438 0.86656 0.85230 1.90475 1.43951 1.80163 1.31666 1.41872 1.49396 1.07366 1.21472 1.19698 1.32928 0.82311 1.07940 0.87917 1.25256 0.96801 1.00555 0.95307 1.69610 1.38026 1.35780 1.10908 0.85862 0.78001 0.81770 0.78675 1.20451 1.20934 1.19411 0.96816 0.88623 0.92124 0.94898 0.90591 0.90143 0.91089 0.91518 0.91238 0.76366 0.86885 0.87656 0.84472 0.84314 0.81932 0.93458 0.89373 0.77487 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.96 60.07 0.54 0.86 16 2 N -0.52 -8.37 4.50 -244.38 -1.10 -9.47 16 3 C 0.06 0.69 4.96 -3.82 -0.02 0.67 16 4 C -0.13 -1.21 5.25 -26.73 -0.14 -1.35 16 5 C 0.12 1.10 5.67 -4.04 -0.02 1.08 16 6 N -0.73 -5.61 5.56 -60.30 -0.33 -5.95 16 7 C 0.51 4.83 7.82 -10.98 -0.09 4.74 16 8 O -0.53 -7.34 16.03 5.56 0.09 -7.25 16 9 C -0.07 -0.45 6.19 -29.03 -0.18 -0.63 16 10 C -0.16 -1.34 5.00 -36.00 -0.18 -1.52 16 11 C -0.13 -1.05 10.05 -41.21 -0.41 -1.47 16 12 C -0.13 -1.02 10.18 -41.21 -0.42 -1.44 16 13 C -0.21 -1.61 11.23 29.04 0.33 -1.29 16 14 S 0.11 0.90 23.33 -107.50 -2.51 -1.61 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 16 C 0.44 10.40 7.47 -10.98 -0.08 10.32 16 17 O -0.58 -15.38 13.91 5.55 0.08 -15.31 16 18 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.10 1.85 5.82 -51.93 -0.30 1.55 16 29 H 0.06 0.80 6.47 -51.93 -0.34 0.47 16 30 H 0.03 0.38 8.12 -51.93 -0.42 -0.05 16 31 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.65 6.55 -51.93 -0.34 0.31 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 1.99 8.47 -40.82 -0.35 1.64 16 37 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 43 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 44 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 391.78 15.07 5.90 5.90 Total: -1.00 -34.40 391.78 -9.81 -44.20 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.63 Total: 8.78 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -0.95 Total: 2.81 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.77 Total: -53.47 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.17 Total: -22.56 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.51 Total: -1.61 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.40 -9.81 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231242804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.117 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds