Wall clock time and date at job start Sat Apr 11 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46906 * 111.00280 * 2 1 4 4 C 1.53000 * 109.47080 * 66.04563 * 3 2 1 5 5 N 1.46496 * 109.46986 * 180.02562 * 4 3 2 6 6 C 1.34784 * 119.99741 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99865 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47110 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47116 * 179.97438 * 9 8 6 11 11 C 1.33391 * 125.19937 * 90.00083 * 10 9 8 12 12 C 1.38423 * 114.92045 * 179.97438 * 11 10 9 13 13 C 1.33390 * 114.91979 * 359.97438 * 12 11 10 14 14 S 1.75878 * 125.20693 * 269.69344 * 10 9 8 15 15 C 1.46900 * 111.00226 * 236.04847 * 2 1 3 16 16 C 1.50702 * 109.46973 * 293.95161 * 15 2 1 17 17 O 1.21296 * 119.99897 * 0.02562 * 16 15 2 18 18 N 1.34777 * 120.00366 * 179.97438 * 16 15 2 19 19 C 1.37090 * 119.99986 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00292 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99969 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00215 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99711 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47672 * 89.99876 * 23 21 19 25 25 H 1.48505 * 109.46813 * 209.99817 * 23 21 19 26 26 H 1.48504 * 109.47131 * 329.99416 * 23 21 19 27 27 H 1.09004 * 109.47072 * 59.99914 * 1 2 3 28 28 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47064 * 300.00315 * 1 2 3 30 30 H 1.09005 * 109.46522 * 306.04711 * 3 2 1 31 31 H 1.08991 * 109.47468 * 186.04740 * 3 2 1 32 32 H 1.09000 * 109.47214 * 59.99903 * 4 3 2 33 33 H 1.09000 * 109.46955 * 300.00119 * 4 3 2 34 34 H 0.96998 * 120.00681 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.47543 * 59.99570 * 8 6 5 36 36 H 1.09008 * 109.47338 * 300.00084 * 8 6 5 37 37 H 1.09000 * 109.46884 * 60.00335 * 9 8 6 38 38 H 1.09000 * 109.46955 * 299.99651 * 9 8 6 39 39 H 1.07995 * 122.54106 * 359.95411 * 11 10 9 40 40 H 1.08001 * 122.53959 * 180.02562 * 12 11 10 41 41 H 1.07998 * 125.20163 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.47235 * 53.95205 * 15 2 1 43 43 H 1.09003 * 109.47294 * 173.95555 * 15 2 1 44 44 H 0.96996 * 119.99833 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3183 5 7 2.1560 3.4253 1.3180 6 6 1.9555 4.2241 2.3849 7 8 1.3404 3.8107 3.3449 8 6 2.4955 5.6310 2.3849 9 6 2.1315 6.3171 3.7031 10 6 2.6721 7.7238 3.7033 11 6 2.0182 8.7989 3.2607 12 6 2.7173 9.9894 3.3618 13 6 3.9387 9.8811 3.8870 14 16 4.2586 8.2003 4.2943 15 6 1.9954 -0.7659 -1.1376 16 6 1.6369 -2.2204 -0.9729 17 8 1.0046 -2.5831 -0.0034 18 7 2.0180 -3.1180 -1.9032 19 6 1.6914 -4.4410 -1.7536 20 1 1.1285 -4.7639 -0.8904 21 6 2.0848 -5.3665 -2.7125 22 7 1.7722 -6.6347 -2.5688 23 14 3.0592 -4.8079 -4.2052 24 1 4.5114 -4.8761 -3.9023 25 1 2.7516 -5.6937 -5.3568 26 1 2.6891 -3.4100 -4.5432 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.5610 1.9273 -0.8310 31 1 3.0796 1.3444 -0.1083 32 1 2.0658 1.5015 2.1492 33 1 0.5472 2.0845 1.4265 34 1 2.6483 3.7559 0.5504 35 1 2.0610 6.1871 1.5542 36 1 3.5798 5.6040 2.2762 37 1 2.5658 5.7612 4.5340 38 1 1.0472 6.3442 3.8112 39 1 1.0193 8.7447 2.8540 40 1 2.3048 10.9344 3.0405 41 1 4.6246 10.7007 4.0421 42 1 1.5611 -0.3872 -2.0628 43 1 3.0797 -0.6610 -1.1756 44 1 2.5233 -2.8279 -2.6787 45 1 2.0471 -7.2809 -3.2381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266357609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:55 Heat of formation + Delta-G solvation = -30.928087 kcal Electronic energy + Delta-G solvation = -25205.329129 eV Core-core repulsion = 21349.831071 eV Total energy + Delta-G solvation = -3855.498057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06040 -38.84883 -38.31576 -36.95649 -34.77566 -34.08356 -33.87216 -31.69221 -30.20509 -28.87135 -27.83343 -25.85195 -25.01010 -23.70041 -22.75246 -21.30392 -20.49681 -19.66633 -19.37329 -18.28541 -17.85640 -16.92790 -16.41736 -16.28455 -15.94125 -15.82961 -15.41961 -14.97541 -14.81831 -14.45779 -13.92165 -13.86270 -13.65115 -13.57102 -13.18876 -13.09471 -13.08465 -12.58405 -12.50897 -12.45145 -12.34817 -12.07831 -11.86779 -11.56478 -11.48417 -11.39474 -11.14209 -11.08785 -11.05895 -10.61360 -10.16551 -9.98595 -9.55428 -9.27359 -9.07736 -8.90186 -8.61979 -8.19574 -8.03283 -6.31945 -3.83419 0.55619 1.20719 1.58561 2.30310 2.39060 2.83630 3.00516 3.05325 3.13734 3.71723 3.96004 4.09076 4.24596 4.49313 4.59652 4.64436 4.68724 4.74350 4.85725 4.96568 5.05334 5.11991 5.17775 5.19684 5.30161 5.36985 5.46281 5.57702 5.63902 5.72657 5.74760 5.79401 5.80144 5.86679 5.89743 5.94916 6.06695 6.17687 6.48349 7.05809 7.19716 7.23071 7.57195 7.96465 8.13693 8.59128 8.94446 9.41324 9.82146 10.81166 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.001417 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.321657 B =19751.237984 C =20134.008448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.730 5.730 6 C 0.512 3.488 7 O -0.537 6.537 8 C -0.135 4.135 9 C -0.035 4.035 10 C -0.171 4.171 11 C -0.141 4.141 12 C -0.133 4.133 13 C -0.218 4.218 14 S 0.097 5.903 15 C 0.044 3.956 16 C 0.452 3.548 17 O -0.558 6.558 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 H 0.016 0.984 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 34.561 5.665 35.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.382 5.382 6 C 0.298 3.702 7 O -0.414 6.414 8 C -0.176 4.176 9 C -0.074 4.074 10 C -0.289 4.289 11 C -0.171 4.171 12 C -0.164 4.164 13 C -0.353 4.353 14 S 0.361 5.639 15 C -0.087 4.087 16 C 0.238 3.762 17 O -0.439 6.439 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 H 0.035 0.965 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.233 0.767 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.180 0.820 42 H 0.068 0.932 43 H 0.108 0.892 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.927 32.776 8.020 34.259 hybrid contribution -0.301 1.683 -3.165 3.597 sum 5.626 34.459 4.855 35.251 Atomic orbital electron populations 1.22645 0.86276 1.04875 0.99277 1.61432 1.09106 1.10573 1.42835 1.22256 1.00717 0.89663 0.95784 1.21347 0.99688 0.80713 0.98581 1.45964 1.58098 1.14449 1.19728 1.20592 0.79864 0.87367 0.82382 1.90745 1.40749 1.75794 1.34064 1.21680 1.03063 0.92829 0.99978 1.19876 1.02151 0.88205 0.97188 1.24550 0.97910 0.99631 1.06760 1.20176 1.01813 0.91412 1.03710 1.20192 0.94390 0.99432 1.02375 1.25636 1.01540 0.99652 1.08475 1.84418 1.15818 1.01583 1.62110 1.21901 1.00788 0.94094 0.91922 1.19607 0.85213 0.86393 0.85032 1.90539 1.42541 1.79890 1.30952 1.42201 1.51047 1.08386 1.21396 1.19432 1.33840 0.80304 1.09783 0.86236 1.25034 0.97870 0.95124 0.98089 1.69622 1.45628 1.01144 1.35704 0.86675 0.80921 0.78662 0.83121 1.19608 1.20199 1.19577 0.96541 0.88300 0.91660 0.94538 0.90268 0.90165 0.91100 0.76680 0.88481 0.88617 0.89755 0.88990 0.84223 0.84332 0.81982 0.93236 0.89182 0.79746 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.96 60.06 0.54 0.80 16 2 N -0.52 -7.91 4.50 -244.37 -1.10 -9.01 16 3 C 0.04 0.48 5.07 -3.82 -0.02 0.46 16 4 C 0.12 1.33 5.60 -4.04 -0.02 1.31 16 5 N -0.73 -6.10 5.56 -60.30 -0.33 -6.44 16 6 C 0.51 4.97 7.83 -10.98 -0.09 4.89 16 7 O -0.54 -7.60 15.98 5.56 0.09 -7.51 16 8 C -0.13 -0.84 5.68 -27.89 -0.16 -1.00 16 9 C -0.03 -0.25 5.00 -27.88 -0.14 -0.39 16 10 C -0.17 -1.19 5.76 -36.00 -0.21 -1.40 16 11 C -0.14 -0.91 10.05 -41.21 -0.41 -1.32 16 12 C -0.13 -0.79 10.18 -41.21 -0.42 -1.21 16 13 C -0.22 -1.28 11.23 29.04 0.33 -0.96 16 14 S 0.10 0.65 23.33 -107.50 -2.51 -1.86 16 15 C 0.04 0.71 5.45 -4.97 -0.03 0.69 16 16 C 0.45 10.08 7.48 -10.98 -0.08 10.00 16 17 O -0.56 -14.71 13.91 5.54 0.08 -14.64 16 18 N -0.59 -13.85 5.09 -10.96 -0.06 -13.90 16 19 C -0.30 -8.55 10.16 -14.94 -0.15 -8.70 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 23 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.10 1.89 5.82 -51.93 -0.30 1.59 16 29 H 0.06 0.91 6.47 -51.93 -0.34 0.58 16 30 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 34 H 0.40 2.07 8.47 -40.82 -0.35 1.73 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.09 1.24 7.93 -51.93 -0.41 0.82 16 44 H 0.37 7.56 5.76 -40.82 -0.24 7.33 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -34.96 388.56 -9.46 -44.42 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.58 Total: 9.32 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.96 Total: 4.20 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.72 Total: -54.18 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.17 Total: -22.15 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.51 Total: -1.86 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.96 -9.46 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266357609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.490 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds