Wall clock time and date at job start Sat Apr 11 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46906 * 111.00280 * 2 1 4 4 C 1.53000 * 109.47080 * 66.04563 * 3 2 1 5 5 N 1.46496 * 109.46986 * 180.02562 * 4 3 2 6 6 C 1.34784 * 119.99741 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99865 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47110 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47116 * 179.97438 * 9 8 6 11 11 C 1.33391 * 125.19937 * 90.00083 * 10 9 8 12 12 C 1.38423 * 114.92045 * 179.97438 * 11 10 9 13 13 C 1.33390 * 114.91979 * 359.97438 * 12 11 10 14 14 S 1.75878 * 125.20693 * 269.69344 * 10 9 8 15 15 C 1.46900 * 111.00226 * 236.04847 * 2 1 3 16 16 C 1.50702 * 109.46973 * 293.95161 * 15 2 1 17 17 O 1.21296 * 119.99897 * 0.02562 * 16 15 2 18 18 N 1.34777 * 120.00366 * 179.97438 * 16 15 2 19 19 C 1.37090 * 119.99986 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00292 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99969 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00215 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99711 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47672 * 89.99876 * 23 21 19 25 25 H 1.48505 * 109.46813 * 209.99817 * 23 21 19 26 26 H 1.48504 * 109.47131 * 329.99416 * 23 21 19 27 27 H 1.09004 * 109.47072 * 59.99914 * 1 2 3 28 28 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47064 * 300.00315 * 1 2 3 30 30 H 1.09005 * 109.46522 * 306.04711 * 3 2 1 31 31 H 1.08991 * 109.47468 * 186.04740 * 3 2 1 32 32 H 1.09000 * 109.47214 * 59.99903 * 4 3 2 33 33 H 1.09000 * 109.46955 * 300.00119 * 4 3 2 34 34 H 0.96998 * 120.00681 * 359.97438 * 5 4 3 35 35 H 1.09000 * 109.47543 * 59.99570 * 8 6 5 36 36 H 1.09008 * 109.47338 * 300.00084 * 8 6 5 37 37 H 1.09000 * 109.46884 * 60.00335 * 9 8 6 38 38 H 1.09000 * 109.46955 * 299.99651 * 9 8 6 39 39 H 1.07995 * 122.54106 * 359.95411 * 11 10 9 40 40 H 1.08001 * 122.53959 * 180.02562 * 12 11 10 41 41 H 1.07998 * 125.20163 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.47235 * 53.95205 * 15 2 1 43 43 H 1.09003 * 109.47294 * 173.95555 * 15 2 1 44 44 H 0.96996 * 119.99833 * 0.02562 * 18 16 15 45 45 H 0.97003 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3183 5 7 2.1560 3.4253 1.3180 6 6 1.9555 4.2241 2.3849 7 8 1.3404 3.8107 3.3449 8 6 2.4955 5.6310 2.3849 9 6 2.1315 6.3171 3.7031 10 6 2.6721 7.7238 3.7033 11 6 2.0182 8.7989 3.2607 12 6 2.7173 9.9894 3.3618 13 6 3.9387 9.8811 3.8870 14 16 4.2586 8.2003 4.2943 15 6 1.9954 -0.7659 -1.1376 16 6 1.6369 -2.2204 -0.9729 17 8 1.0046 -2.5831 -0.0034 18 7 2.0180 -3.1180 -1.9032 19 6 1.6914 -4.4410 -1.7536 20 1 1.1285 -4.7639 -0.8904 21 6 2.0848 -5.3665 -2.7125 22 7 1.7722 -6.6347 -2.5688 23 14 3.0592 -4.8079 -4.2052 24 1 4.5114 -4.8761 -3.9023 25 1 2.7516 -5.6937 -5.3568 26 1 2.6891 -3.4100 -4.5432 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.5610 1.9273 -0.8310 31 1 3.0796 1.3444 -0.1083 32 1 2.0658 1.5015 2.1492 33 1 0.5472 2.0845 1.4265 34 1 2.6483 3.7559 0.5504 35 1 2.0610 6.1871 1.5542 36 1 3.5798 5.6040 2.2762 37 1 2.5658 5.7612 4.5340 38 1 1.0472 6.3442 3.8112 39 1 1.0193 8.7447 2.8540 40 1 2.3048 10.9344 3.0405 41 1 4.6246 10.7007 4.0421 42 1 1.5611 -0.3872 -2.0628 43 1 3.0797 -0.6610 -1.1756 44 1 2.5233 -2.8279 -2.6787 45 1 2.0471 -7.2809 -3.2381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266357609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:54 Heat of formation + Delta-G solvation = -58.233790 kcal Electronic energy + Delta-G solvation = -25206.513193 eV Core-core repulsion = 21349.831071 eV Total energy + Delta-G solvation = -3856.682121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88546 -40.44835 -38.81129 -38.21150 -36.05107 -35.50655 -34.66110 -33.74083 -31.09277 -29.69717 -28.98411 -27.06276 -26.10166 -24.88587 -23.36950 -22.28749 -21.34467 -21.18367 -20.16415 -20.10917 -18.47787 -17.81079 -17.45825 -17.27015 -17.00391 -16.76436 -16.51507 -16.23977 -15.94764 -15.61773 -15.28355 -14.88680 -14.87622 -14.58925 -14.22687 -14.16588 -14.10344 -13.72041 -13.59156 -13.15248 -13.07006 -13.03691 -12.90838 -12.84338 -12.57358 -12.54122 -12.39270 -12.10655 -11.99119 -11.96082 -11.57108 -11.45765 -11.00089 -10.36715 -10.21803 -10.09773 -9.54773 -9.38302 -9.23772 -8.39511 -6.00488 0.09562 0.74047 1.13445 1.31190 1.37588 1.46217 1.64020 1.84671 1.98461 2.06605 2.24955 2.77783 3.16437 3.29061 3.65870 3.86573 3.95493 4.05971 4.10961 4.14079 4.25236 4.31828 4.36811 4.44799 4.48253 4.56738 4.63059 4.63986 4.69498 4.74740 4.88257 4.91801 4.97717 5.09048 5.21541 5.27414 5.40425 5.42708 5.54753 5.62936 5.88556 6.00085 6.15810 6.56138 6.62017 6.90906 7.27430 7.42225 8.00567 8.78324 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.001417 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.321657 B =19751.237984 C =20134.008448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.054 3.946 4 C 0.127 3.873 5 N -0.714 5.714 6 C 0.509 3.491 7 O -0.589 6.589 8 C -0.122 4.122 9 C -0.032 4.032 10 C -0.182 4.182 11 C -0.143 4.143 12 C -0.142 4.142 13 C -0.217 4.217 14 S 0.077 5.923 15 C 0.058 3.942 16 C 0.448 3.552 17 O -0.608 6.608 18 N -0.591 5.591 19 C -0.328 4.328 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.228 1.228 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.419 0.581 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.390 0.610 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 38.718 2.555 39.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.074 4.074 4 C 0.002 3.998 5 N -0.367 5.367 6 C 0.297 3.703 7 O -0.469 6.469 8 C -0.162 4.162 9 C -0.071 4.071 10 C -0.299 4.299 11 C -0.173 4.173 12 C -0.172 4.172 13 C -0.352 4.352 14 S 0.340 5.660 15 C -0.073 4.073 16 C 0.236 3.764 17 O -0.492 6.492 18 N -0.234 5.234 19 C -0.458 4.458 20 H 0.071 0.929 21 C -0.214 4.214 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.152 1.152 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.257 0.743 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.169 0.831 40 H 0.176 0.824 41 H 0.199 0.801 42 H 0.102 0.898 43 H 0.144 0.856 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.167 36.988 4.882 38.192 hybrid contribution -1.078 0.413 -2.027 2.333 sum 7.089 37.401 2.854 38.174 Atomic orbital electron populations 1.22460 0.87000 1.02226 1.00746 1.61296 1.08846 1.13530 1.43264 1.22256 1.02014 0.87091 0.96015 1.21090 0.98636 0.81891 0.98171 1.45776 1.57589 1.13165 1.20208 1.21241 0.78885 0.88544 0.81652 1.90731 1.43173 1.76966 1.36056 1.21657 1.04081 0.90324 1.00175 1.19770 1.01460 0.88562 0.97340 1.24494 0.98169 0.99483 1.07731 1.20423 1.02304 0.91421 1.03151 1.20456 0.94383 1.00057 1.02267 1.25928 1.01982 0.99424 1.07899 1.84480 1.16056 1.02815 1.62616 1.21834 1.03070 0.88920 0.93505 1.20983 0.82935 0.89035 0.83410 1.90533 1.44210 1.81506 1.32967 1.42014 1.51885 1.06719 1.22736 1.18994 1.34821 0.83234 1.08724 0.92897 1.26138 0.98661 0.94613 1.02031 1.69815 1.47286 1.03086 1.37551 0.85345 0.78948 0.80231 0.76838 1.18141 1.20215 1.15157 0.94190 0.92892 0.91091 0.91673 0.87943 0.93022 0.92685 0.74308 0.85915 0.86748 0.91498 0.89920 0.83055 0.82427 0.80139 0.89838 0.85608 0.77425 0.91209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 8.96 127.69 1.14 1.86 16 2 N -0.54 -15.54 4.50 -927.06 -4.17 -19.72 16 3 C 0.05 0.96 5.07 86.30 0.44 1.39 16 4 C 0.13 2.62 5.60 86.38 0.48 3.10 16 5 N -0.71 -10.16 5.56 -463.06 -2.57 -12.73 16 6 C 0.51 9.26 7.83 87.65 0.69 9.94 16 7 O -0.59 -16.99 15.98 -3.03 -0.05 -17.04 16 8 C -0.12 -1.26 5.68 29.85 0.17 -1.09 16 9 C -0.03 -0.44 5.00 29.85 0.15 -0.29 16 10 C -0.18 -2.31 5.76 24.59 0.14 -2.17 16 11 C -0.14 -1.57 10.05 21.22 0.21 -1.36 16 12 C -0.14 -1.36 10.18 21.22 0.22 -1.14 16 13 C -0.22 -2.13 11.23 66.72 0.75 -1.38 16 14 S 0.08 0.95 23.33 -56.49 -1.32 -0.37 16 15 C 0.06 1.65 5.45 85.56 0.47 2.12 16 16 C 0.45 19.92 7.48 87.66 0.66 20.57 16 17 O -0.61 -33.68 13.91 -3.08 -0.04 -33.72 16 18 N -0.59 -27.41 5.09 -306.98 -1.56 -28.97 16 19 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 20 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 21 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 22 N -0.94 -56.58 13.96 21.66 0.30 -56.27 16 23 Si 0.97 38.11 27.74 68.60 1.90 40.01 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 2.10 5.82 -2.39 -0.01 2.09 16 29 H 0.07 2.00 6.47 -2.39 -0.02 1.99 16 30 H 0.07 0.86 8.12 -2.38 -0.02 0.84 16 31 H 0.10 1.40 7.93 -2.39 -0.02 1.38 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.32 6.55 -2.39 -0.02 1.30 16 34 H 0.42 2.62 8.47 -92.71 -0.79 1.84 16 35 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 38 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 40 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 43 H 0.13 2.78 7.93 -2.39 -0.02 2.76 16 44 H 0.39 14.68 5.76 -92.71 -0.53 14.15 16 45 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -85.21 388.56 -1.04 -86.25 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.36 Total: 29.79 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.83 Total: 12.78 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -8.00 Total: -117.70 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.09 Total: -50.76 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.90 Total: 40.01 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -1.32 Total: -0.37 kcal Total: -85.21 -1.04 -86.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266357609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.014 kcal (2) G-P(sol) polarization free energy of solvation -85.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds