Wall clock time and date at job start Sat Apr 11 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46718 * 2 1 4 4 C 1.46904 * 110.99825 * 76.03218 * 3 2 1 5 5 C 1.53000 * 109.46961 * 199.54419 * 4 3 2 6 6 N 1.46498 * 109.46965 * 174.88382 * 5 4 3 7 7 C 1.34777 * 120.00066 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99973 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00141 * 180.02562 * 7 6 5 10 10 C 1.50703 * 109.46985 * 180.02562 * 9 7 6 11 11 C 1.33389 * 125.20091 * 90.00344 * 10 9 7 12 12 C 1.38420 * 114.91977 * 179.97438 * 11 10 9 13 13 C 1.33386 * 114.92300 * 0.02562 * 12 11 10 14 14 S 1.75880 * 125.20418 * 269.69120 * 10 9 7 15 15 C 1.46900 * 110.99712 * 199.98280 * 3 2 1 16 16 C 1.50696 * 109.47233 * 66.05140 * 15 3 2 17 17 O 1.21289 * 120.00004 * 359.97438 * 16 15 3 18 18 N 1.34777 * 119.99977 * 180.02562 * 16 15 3 19 19 C 1.37100 * 120.00217 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99686 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00421 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99673 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00425 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46794 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47518 * 119.99093 * 23 21 19 26 26 H 1.48492 * 109.47255 * 240.00147 * 23 21 19 27 27 H 1.08999 * 109.46851 * 174.86975 * 1 2 3 28 28 H 1.08999 * 109.46637 * 294.86552 * 1 2 3 29 29 H 1.08989 * 109.47315 * 54.87161 * 1 2 3 30 30 H 1.08998 * 109.47113 * 240.00711 * 2 1 3 31 31 H 1.08998 * 109.47308 * 120.00201 * 2 1 3 32 32 H 1.09002 * 109.47297 * 79.54462 * 4 3 2 33 33 H 1.08995 * 109.46696 * 319.54191 * 4 3 2 34 34 H 1.08997 * 109.47380 * 54.88555 * 5 4 3 35 35 H 1.09003 * 109.47106 * 294.88479 * 5 4 3 36 36 H 0.97006 * 120.00149 * 0.02562 * 6 5 4 37 37 H 1.08997 * 109.47051 * 60.00115 * 9 7 6 38 38 H 1.09003 * 109.47091 * 300.00249 * 9 7 6 39 39 H 1.08001 * 122.53792 * 359.95454 * 11 10 9 40 40 H 1.07999 * 122.53811 * 180.02562 * 12 11 10 41 41 H 1.08005 * 125.20679 * 180.02562 * 13 12 11 42 42 H 1.09002 * 109.47010 * 186.04971 * 15 3 2 43 43 H 1.09006 * 109.47452 * 306.04811 * 15 3 2 44 44 H 0.97000 * 120.00179 * 359.97438 * 18 16 15 45 45 H 0.96998 * 120.00068 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8829 1.9917 1.3309 5 6 1.9278 3.5157 1.2037 6 7 1.6697 4.1227 2.5119 7 6 1.6605 5.4641 2.6423 8 8 1.8654 6.1687 1.6767 9 6 1.3956 6.0885 3.9881 10 6 1.4396 7.5896 3.8627 11 6 0.3939 8.3688 3.5824 12 6 0.6757 9.7226 3.5188 13 6 1.9503 10.0427 3.7468 14 16 2.8761 8.5828 4.0714 15 6 3.4103 1.4518 -0.4687 16 6 3.4711 1.0501 -1.9199 17 8 2.4560 0.7384 -2.5059 18 7 4.6537 1.0363 -2.5662 19 6 4.7092 0.6703 -3.8863 20 1 3.8053 0.3928 -4.4081 21 6 5.9284 0.6555 -4.5526 22 7 7.0283 0.9927 -3.9174 23 14 6.0041 0.1563 -6.3510 24 1 4.6383 -0.1754 -6.8305 25 1 6.5518 1.2790 -7.1538 26 1 6.8821 -1.0322 -6.4983 27 1 -0.3633 -1.0235 -0.0919 28 1 -0.3632 0.4321 0.9324 29 1 -0.3633 0.5913 -0.8404 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.7006 1.6561 1.9689 33 1 0.9320 1.6916 1.7710 34 1 1.1677 3.8437 0.4947 35 1 2.9119 3.8219 0.8489 36 1 1.5062 3.5591 3.2843 37 1 2.1557 5.7602 4.6968 38 1 0.4114 5.7825 4.3431 39 1 -0.5975 7.9734 3.4173 40 1 -0.0793 10.4634 3.3009 41 1 2.3515 11.0454 3.7388 42 1 3.7826 2.4702 -0.3577 43 1 4.0259 0.7735 0.1222 44 1 5.4656 1.2852 -2.0974 45 1 7.8795 0.9821 -4.3824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266372459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:58 Heat of formation + Delta-G solvation = -32.586701 kcal Electronic energy + Delta-G solvation = -26043.822481 eV Core-core repulsion = 22188.252501 eV Total energy + Delta-G solvation = -3855.569980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96286 -38.78709 -37.88157 -36.87036 -34.76708 -33.80617 -32.58931 -31.34226 -30.81194 -29.32010 -27.39747 -26.06596 -24.26142 -23.61981 -22.50972 -21.14589 -20.52572 -19.48563 -19.15328 -17.85400 -17.56487 -17.23822 -16.29521 -16.08902 -15.74127 -15.54919 -15.13052 -14.68968 -14.54568 -14.13159 -14.03059 -13.80096 -13.68346 -13.34375 -13.07976 -13.01910 -12.80065 -12.60769 -12.39616 -12.17752 -11.86283 -11.72344 -11.56860 -11.47333 -11.43019 -11.11987 -10.96915 -10.79291 -10.53381 -10.32408 -10.20534 -10.07880 -9.45906 -9.17252 -8.89345 -8.64512 -8.42499 -7.98143 -7.90548 -6.39729 -3.80349 0.75228 1.41679 1.78364 2.48208 2.49770 3.00926 3.17906 3.28442 3.35630 3.91634 4.04376 4.26467 4.28228 4.65329 4.75536 4.84424 4.85543 4.99383 5.02726 5.13359 5.26604 5.32992 5.34602 5.35380 5.42295 5.58159 5.78499 5.82293 5.86446 5.86721 5.90995 5.98014 6.04749 6.11213 6.24802 6.26375 6.30784 6.45435 6.55659 7.25376 7.27722 7.37274 7.57479 8.07315 8.08558 8.63633 9.20260 9.56588 10.08088 10.78166 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.002067 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.163665 B =13545.947096 C =15127.736418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 N -0.512 5.512 4 C 0.045 3.955 5 C 0.121 3.879 6 N -0.730 5.730 7 C 0.510 3.490 8 O -0.522 6.522 9 C -0.070 4.070 10 C -0.160 4.160 11 C -0.128 4.128 12 C -0.134 4.134 13 C -0.214 4.214 14 S 0.108 5.892 15 C 0.042 3.958 16 C 0.444 3.556 17 O -0.576 6.576 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.022 0.978 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 10.271 22.635 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.074 4.074 3 N -0.237 5.237 4 C -0.084 4.084 5 C -0.002 4.002 6 N -0.383 5.383 7 C 0.294 3.706 8 O -0.396 6.396 9 C -0.112 4.112 10 C -0.278 4.278 11 C -0.158 4.158 12 C -0.164 4.164 13 C -0.350 4.350 14 S 0.372 5.628 15 C -0.089 4.089 16 C 0.229 3.771 17 O -0.459 6.459 18 N -0.202 5.202 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.232 0.768 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.181 0.819 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.296 10.564 21.441 25.646 hybrid contribution -0.288 -0.422 -0.044 0.513 sum -9.584 10.142 21.397 25.545 Atomic orbital electron populations 1.21690 0.95262 1.01092 1.01570 1.22167 0.96011 0.87889 1.01379 1.61448 1.20044 1.19563 1.22609 1.22251 1.01431 0.93633 0.91105 1.21361 1.02705 0.92177 0.84002 1.45919 1.73564 1.06533 1.12280 1.20437 0.77321 0.82151 0.90656 1.90782 1.47310 1.61341 1.40209 1.20149 1.05288 0.89583 0.96147 1.23770 0.96605 0.97722 1.09666 1.20063 0.99800 0.93027 1.02921 1.20124 0.96477 0.96320 1.03495 1.25606 0.97459 1.01828 1.10085 1.84242 1.11986 0.97508 1.69039 1.21948 0.88927 1.01934 0.96100 1.19697 0.84567 0.84920 0.87913 1.90508 1.34068 1.53171 1.68202 1.41882 1.07448 1.59438 1.11400 1.19740 0.95134 1.41741 0.86035 0.87850 1.25263 0.94823 0.97544 1.00400 1.69621 0.98699 1.48538 1.37483 0.85805 0.78506 0.78036 0.82035 1.19223 1.20743 1.20821 0.92845 0.93934 0.91383 0.88450 0.95937 0.94342 0.90228 0.90169 0.91249 0.76824 0.87799 0.86976 0.84460 0.84324 0.81945 0.89301 0.93396 0.77526 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.96 37.16 0.37 -1.49 16 2 C 0.05 0.82 5.18 -3.82 -0.02 0.80 16 3 N -0.51 -8.15 4.10 -236.06 -0.97 -9.12 16 4 C 0.04 0.52 4.92 -3.82 -0.02 0.50 16 5 C 0.12 1.50 5.70 -4.04 -0.02 1.47 16 6 N -0.73 -6.78 5.56 -60.30 -0.33 -7.12 16 7 C 0.51 5.70 7.82 -10.99 -0.09 5.61 16 8 O -0.52 -8.51 16.03 5.55 0.09 -8.42 16 9 C -0.07 -0.52 6.19 -29.04 -0.18 -0.70 16 10 C -0.16 -1.55 5.00 -36.00 -0.18 -1.73 16 11 C -0.13 -1.21 10.05 -41.21 -0.41 -1.62 16 12 C -0.13 -1.19 10.18 -41.21 -0.42 -1.61 16 13 C -0.21 -1.89 11.23 29.04 0.33 -1.56 16 14 S 0.11 1.04 23.33 -107.50 -2.51 -1.46 16 15 C 0.04 0.75 5.27 -4.98 -0.03 0.72 16 16 C 0.44 10.43 7.29 -10.99 -0.08 10.35 16 17 O -0.58 -15.34 14.12 5.55 0.08 -15.26 16 18 N -0.56 -14.39 5.29 -10.97 -0.06 -14.45 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 23 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.48 6.91 -51.93 -0.36 0.12 16 29 H 0.07 1.06 8.14 -51.94 -0.42 0.63 16 30 H 0.10 1.87 5.85 -51.93 -0.30 1.57 16 31 H 0.02 0.30 7.99 -51.93 -0.42 -0.11 16 32 H 0.04 0.40 8.00 -51.93 -0.42 -0.02 16 33 H 0.08 0.79 6.58 -51.93 -0.34 0.44 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.98 6.95 -51.93 -0.36 0.62 16 36 H 0.40 2.24 8.47 -40.82 -0.35 1.90 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.09 1.48 6.71 -51.93 -0.35 1.13 16 43 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -34.76 390.18 -9.64 -44.40 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -6.53 Total: 10.61 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.99 Total: 2.77 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.64 Total: -54.75 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.17 Total: -23.69 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.46 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.76 -9.64 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266372459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.810 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds