Wall clock time and date at job start Sat Apr 11 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99888 * 2 1 4 4 C 1.53000 * 109.47048 * 293.95182 * 3 2 1 5 5 N 1.46502 * 109.46834 * 180.02562 * 4 3 2 6 6 C 1.34770 * 119.99868 * 179.97438 * 5 4 3 7 7 O 1.21288 * 120.00260 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00299 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47529 * 180.02562 * 8 6 5 10 10 C 1.76203 * 100.00121 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99950 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99774 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00278 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99812 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47098 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46973 * 120.00086 * 14 12 10 17 17 H 1.48501 * 109.47388 * 240.00380 * 14 12 10 18 18 C 1.46902 * 110.99573 * 123.95366 * 2 1 3 19 19 C 1.50699 * 109.47144 * 66.05037 * 18 2 1 20 20 N 1.30256 * 125.62207 * 90.02204 * 19 18 2 21 21 C 1.34478 * 108.69937 * 179.97438 * 20 19 18 22 22 C 1.34332 * 107.66920 * 359.97438 * 21 20 19 23 23 C 1.50702 * 126.43964 * 180.02562 * 22 21 20 24 24 C 1.53006 * 117.49487 * 188.74686 * 23 22 21 25 25 C 1.53004 * 117.49810 * 120.09290 * 23 22 21 26 26 O 1.33970 * 125.61755 * 269.70896 * 19 18 2 27 27 H 1.09001 * 109.46544 * 60.00058 * 1 2 3 28 28 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47033 * 300.00113 * 1 2 3 30 30 H 1.08992 * 109.47062 * 53.95734 * 3 2 1 31 31 H 1.09003 * 109.46753 * 173.95421 * 3 2 1 32 32 H 1.09001 * 109.47085 * 300.00035 * 4 3 2 33 33 H 1.08993 * 109.47201 * 60.00475 * 4 3 2 34 34 H 0.97003 * 120.00020 * 0.02562 * 5 4 3 35 35 H 1.08997 * 109.47302 * 300.00560 * 8 6 5 36 36 H 1.09003 * 109.46719 * 60.00284 * 8 6 5 37 37 H 0.96998 * 120.00020 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.46557 * 186.04354 * 18 2 1 39 39 H 1.08994 * 109.47575 * 306.04356 * 18 2 1 40 40 H 1.07997 * 126.16674 * 180.02562 * 21 20 19 41 41 H 1.08999 * 115.55419 * 334.41686 * 23 22 21 42 42 H 1.08997 * 117.50275 * 0.02562 * 24 23 22 43 43 H 1.08999 * 117.49412 * 145.01835 * 24 23 22 44 44 H 1.08999 * 117.49654 * 214.97792 * 25 23 22 45 45 H 1.09000 * 117.49779 * 359.96755 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1570 3.4249 -1.3185 6 6 1.9567 4.2236 -2.3854 7 8 1.3409 3.8104 -3.3452 8 6 2.4968 5.6305 -2.3855 9 16 2.0664 6.4420 -3.9450 10 6 2.7998 8.0221 -3.6803 11 1 3.3193 8.2283 -2.7563 12 6 2.7106 9.0014 -4.6599 13 7 2.0777 8.7500 -5.7864 14 14 3.4875 10.6768 -4.3790 15 1 4.1339 10.7049 -3.0424 16 1 4.5080 10.9312 -5.4274 17 1 2.4386 11.7261 -4.4442 18 6 1.9954 -0.7660 1.1376 19 6 1.6369 -2.2204 0.9728 20 7 2.3601 -3.1156 0.3626 21 6 1.7202 -4.2971 0.4173 22 6 0.5702 -4.1075 1.0851 23 6 -0.4706 -5.1537 1.3904 24 6 -1.7979 -4.6775 1.9843 25 6 -0.7902 -5.4240 2.8621 26 8 0.5247 -2.8071 1.4350 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3443 0.1082 32 1 2.0659 1.5015 -2.1492 33 1 0.5473 2.0845 -1.4265 34 1 2.6498 3.7552 -0.5510 35 1 2.0621 6.1866 -1.5549 36 1 3.5810 5.6034 -2.2767 37 1 2.0151 9.4345 -6.4707 38 1 3.0797 -0.6611 1.1756 39 1 1.5611 -0.3873 2.0628 40 1 2.0686 -5.2305 0.0003 41 1 -0.5011 -6.0007 0.7050 42 1 -1.9184 -3.6076 2.1538 43 1 -2.7013 -5.2115 1.6899 44 1 -1.0311 -6.4487 3.1448 45 1 -0.2472 -4.8454 3.6095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267187501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:00 Heat of formation + Delta-G solvation = -6.685557 kcal Electronic energy + Delta-G solvation = -25254.978846 eV Core-core repulsion = 21400.532024 eV Total energy + Delta-G solvation = -3854.446822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.39800 -40.65864 -38.95989 -38.09962 -35.84046 -35.70301 -34.57291 -32.42910 -31.26173 -29.29723 -28.69793 -27.65545 -25.88020 -24.07612 -23.39052 -23.01923 -22.22970 -21.77222 -21.44033 -19.82449 -18.21080 -18.08213 -17.73016 -17.35470 -16.98658 -16.87432 -16.84301 -16.28500 -16.18763 -15.96404 -15.52900 -15.26534 -14.83144 -14.64915 -14.33990 -14.27804 -14.01856 -13.59147 -13.40263 -13.14818 -13.02612 -12.96613 -12.90146 -12.70648 -12.56529 -12.50664 -12.35073 -12.21559 -11.98775 -11.80793 -11.69901 -11.27913 -11.14876 -10.99567 -10.25394 -10.11896 -9.66822 -9.45885 -8.65699 -8.33709 -6.11795 0.31020 1.27103 1.42481 1.44420 1.51209 1.59683 1.62233 1.63476 2.20115 2.28729 2.85772 2.92649 3.00723 3.07541 3.35018 3.47523 3.74941 3.79301 3.93828 3.98228 4.01655 4.06262 4.10198 4.25092 4.32588 4.34031 4.40999 4.50470 4.52032 4.53387 4.69948 4.72427 4.75905 4.84114 4.90979 4.97617 5.01636 5.11511 5.15460 5.28218 5.38911 5.43478 5.76008 5.83093 6.21274 6.51992 6.71762 7.07821 7.26176 8.75840 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.040551 B = 0.001435 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.321526 B =19503.115272 C =19648.281062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.551 5.551 3 C 0.060 3.940 4 C 0.126 3.874 5 N -0.709 5.709 6 C 0.533 3.467 7 O -0.568 6.568 8 C -0.128 4.128 9 S -0.156 6.156 10 C -0.545 4.545 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.274 1.274 18 C 0.156 3.844 19 C 0.187 3.813 20 N -0.494 5.494 21 C -0.055 4.055 22 C -0.016 4.016 23 C -0.092 4.092 24 C -0.170 4.170 25 C -0.155 4.155 26 O -0.209 6.209 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.419 0.581 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.202 0.798 41 H 0.160 0.840 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.041 -27.868 24.270 37.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.277 5.277 3 C -0.068 4.068 4 C 0.001 3.999 5 N -0.364 5.364 6 C 0.319 3.681 7 O -0.446 6.446 8 C -0.279 4.279 9 S 0.071 5.929 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.200 1.200 18 C 0.028 3.972 19 C -0.020 4.020 20 N -0.224 5.224 21 C -0.193 4.193 22 C -0.069 4.069 23 C -0.110 4.110 24 C -0.206 4.206 25 C -0.192 4.192 26 O -0.096 6.096 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.257 0.743 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.106 0.894 40 H 0.219 0.781 41 H 0.178 0.822 42 H 0.104 0.896 43 H 0.141 0.859 44 H 0.147 0.853 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.405 -28.590 21.871 36.157 hybrid contribution 0.259 1.662 1.753 2.430 sum -3.146 -26.928 23.624 35.960 Atomic orbital electron populations 1.22500 0.86492 1.01791 1.02004 1.61638 1.08909 1.14178 1.42927 1.22165 1.02389 0.86656 0.95541 1.21211 0.98728 0.81099 0.98838 1.45557 1.58136 1.13441 1.19290 1.20090 0.78847 0.86774 0.82384 1.90705 1.42029 1.75940 1.35963 1.23361 1.05426 0.95323 1.03793 1.85635 1.74412 1.12790 1.20059 1.23247 1.40950 0.98554 1.06504 0.89751 1.26134 0.95507 1.03598 0.93932 1.70197 1.41412 1.35955 1.07329 0.84897 0.77871 0.76167 0.78946 1.17891 1.20030 1.19981 1.20525 1.02985 0.80227 0.93422 1.26373 0.81805 0.97934 0.95900 1.70434 1.32339 1.00692 1.18900 1.23423 0.93286 0.98084 1.04544 1.22945 0.99484 0.82336 1.02135 1.20690 0.93936 0.96531 0.99812 1.23116 0.93204 1.01261 1.03066 1.23184 1.01743 1.03314 0.90925 1.84350 1.41300 1.21826 1.62129 0.91187 0.92548 0.93235 0.91101 0.87534 0.92712 0.92538 0.74330 0.86908 0.86971 0.92030 0.85054 0.89355 0.78095 0.82247 0.89550 0.85860 0.85305 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.15 127.69 1.17 1.50 16 2 N -0.55 -8.91 4.75 -927.05 -4.41 -13.31 16 3 C 0.06 0.79 5.07 86.30 0.44 1.23 16 4 C 0.13 2.78 5.60 86.38 0.48 3.26 16 5 N -0.71 -16.90 5.56 -463.06 -2.57 -19.47 16 6 C 0.53 19.52 7.85 87.66 0.69 20.20 16 7 O -0.57 -26.81 15.86 -3.05 -0.05 -26.85 16 8 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 9 S -0.16 -8.69 20.57 -56.49 -1.16 -9.86 16 10 C -0.54 -31.03 9.50 67.95 0.65 -30.38 16 11 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 12 C 0.01 0.73 5.49 84.86 0.47 1.20 16 13 N -0.91 -56.28 13.22 21.65 0.29 -56.00 16 14 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 15 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 18 C 0.16 2.07 5.59 85.56 0.48 2.55 16 19 C 0.19 3.60 6.91 88.34 0.61 4.21 16 20 N -0.49 -11.20 11.29 -303.83 -3.43 -14.63 16 21 C -0.06 -1.01 11.80 83.39 0.98 -0.02 16 22 C -0.02 -0.26 6.84 24.79 0.17 -0.09 16 23 C -0.09 -0.86 6.25 -11.54 -0.07 -0.94 16 24 C -0.17 -1.40 10.18 30.62 0.31 -1.08 16 25 C -0.15 -1.07 10.24 30.62 0.31 -0.76 16 26 O -0.21 -3.91 9.84 -3.67 -0.04 -3.95 16 27 H 0.07 1.30 6.47 -2.39 -0.02 1.28 16 28 H 0.06 1.03 6.61 -2.39 -0.02 1.02 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 31 H 0.11 1.06 7.93 -2.39 -0.02 1.05 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.40 6.55 -2.39 -0.02 1.39 16 34 H 0.42 6.47 8.47 -92.71 -0.79 5.69 16 35 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 36 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.13 1.39 7.93 -2.39 -0.02 1.37 16 39 H 0.09 0.76 8.12 -2.39 -0.02 0.74 16 40 H 0.20 2.52 8.06 -2.91 -0.02 2.49 16 41 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.96 8.00 -2.39 -0.02 0.95 16 43 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -83.72 396.13 -2.00 -85.72 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.22 Total: 16.46 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 7.12 Total: -3.65 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -10.12 Total: -103.41 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.08 Total: -30.80 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.86 kcal Total: -83.72 -2.00 -85.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267187501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.037 kcal (2) G-P(sol) polarization free energy of solvation -83.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds