Wall clock time and date at job start Sat Apr 11 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99927 * 2 1 4 4 C 1.50700 * 109.46806 * 179.97438 * 3 2 1 5 5 N 1.29438 * 124.80008 * 90.28983 * 4 3 2 6 6 C 1.30944 * 117.35817 * 180.17798 * 5 4 3 7 7 C 1.35666 * 114.19500 * 359.55114 * 6 5 4 8 8 C 1.46676 * 126.12986 * 180.23564 * 7 6 5 9 9 O 1.21687 * 120.00188 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99823 * 180.02562 * 8 7 6 11 11 C 1.47026 * 125.65005 * 359.69105 * 10 8 7 12 12 C 1.54327 * 107.26534 * 178.84843 * 11 10 8 13 13 C 1.55153 * 103.02178 * 338.14000 * 12 11 10 14 14 H 1.08999 * 111.00468 * 277.22883 * 13 12 11 15 15 C 1.52998 * 111.03543 * 153.39743 * 13 12 11 16 16 N 1.46502 * 109.47301 * 181.33274 * 15 13 12 17 17 C 1.46497 * 120.00226 * 89.99735 * 16 15 13 18 18 C 1.36940 * 120.00021 * 269.99829 * 16 15 13 19 19 H 1.07992 * 120.00061 * 142.17902 * 18 16 15 20 20 C 1.38809 * 119.99847 * 322.18545 * 18 16 15 21 21 N 1.31618 * 120.00306 * 157.21617 * 20 18 16 22 22 Si 1.86801 * 120.00004 * 337.21461 * 20 18 16 23 23 H 1.48498 * 109.46944 * 95.82742 * 22 20 18 24 24 H 1.48507 * 109.47085 * 215.82370 * 22 20 18 25 25 H 1.48492 * 109.47112 * 335.82746 * 22 20 18 26 26 C 1.47421 * 125.64709 * 179.97438 * 10 8 7 27 27 S 1.70952 * 124.80613 * 270.00197 * 4 3 2 28 28 H 1.09005 * 109.47195 * 59.99535 * 1 2 3 29 29 H 1.08994 * 109.47043 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47162 * 299.99990 * 1 2 3 31 31 H 1.08999 * 109.46621 * 60.00198 * 3 2 1 32 32 H 1.08999 * 109.47023 * 300.00200 * 3 2 1 33 33 H 1.08000 * 122.90062 * 179.82700 * 6 5 4 34 34 H 1.08997 * 109.88100 * 298.39856 * 11 10 8 35 35 H 1.09005 * 109.87820 * 59.55509 * 11 10 8 36 36 H 1.09008 * 110.84933 * 219.67169 * 12 11 10 37 37 H 1.08996 * 110.66816 * 96.52523 * 12 11 10 38 38 H 1.09005 * 109.47287 * 301.33108 * 15 13 12 39 39 H 1.09004 * 109.47347 * 61.33016 * 15 13 12 40 40 H 1.08997 * 109.47392 * 93.36376 * 17 16 15 41 41 H 1.09000 * 109.46919 * 213.36483 * 17 16 15 42 42 H 1.09007 * 109.47338 * 333.36264 * 17 16 15 43 43 H 0.97000 * 120.00299 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.37014 * 322.92637 * 26 10 8 45 45 H 1.08994 * 110.37041 * 85.14519 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2498 1.1333 -1.0619 6 6 5.5437 1.0263 -0.8918 7 6 5.9330 0.9954 0.4074 8 6 7.3122 0.8866 0.8946 9 8 8.2333 0.8135 0.1028 10 7 7.5593 0.8664 2.2195 11 6 6.5462 0.9521 3.2815 12 6 7.2887 0.8606 4.6313 13 6 8.6238 0.1684 4.2497 14 1 8.5028 -0.9138 4.2009 15 6 9.7385 0.5490 5.2260 16 7 10.9881 -0.0966 4.8164 17 6 11.8978 0.5872 3.8938 18 6 11.3060 -1.3393 5.2958 19 1 11.7897 -2.0589 4.6520 20 6 11.0062 -1.6741 6.6091 21 7 10.8821 -2.9382 6.9541 22 14 10.7789 -0.3306 7.8869 23 1 9.3334 -0.0208 8.0276 24 1 11.3153 -0.7930 9.1922 25 1 11.5071 0.8899 7.4567 26 6 8.8907 0.7608 2.8436 27 16 4.4847 1.1096 1.4047 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.2411 0.9720 -1.7147 34 1 6.0154 1.9015 3.2117 35 1 5.8429 0.1243 3.1904 36 1 6.7285 0.2528 5.3419 37 1 7.4724 1.8552 5.0375 38 1 9.8706 1.6310 5.2228 39 1 9.4709 0.2187 6.2298 40 1 12.6445 1.1405 4.4632 41 1 12.3947 -0.1485 3.2615 42 1 11.3308 1.2785 3.2702 43 1 10.6730 -3.1721 7.8720 44 1 9.5289 0.0926 2.2654 45 1 9.3502 1.7457 2.9264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267708545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:12 Heat of formation + Delta-G solvation = 4.913207 kcal Electronic energy + Delta-G solvation = -27062.811316 eV Core-core repulsion = 23208.867454 eV Total energy + Delta-G solvation = -3853.943862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42871 -39.71407 -38.24272 -37.60025 -35.61983 -32.44191 -31.73313 -31.30177 -29.26928 -28.79648 -26.96436 -26.52356 -25.47301 -24.29713 -23.26041 -21.55206 -21.09085 -20.11322 -19.11167 -18.63892 -17.09289 -16.97046 -16.87024 -16.36997 -16.02748 -15.94450 -15.43746 -15.19874 -14.70977 -14.52548 -14.21786 -13.88088 -13.52551 -13.37984 -13.10272 -13.00115 -12.85148 -12.68071 -12.52210 -12.36143 -11.94816 -11.90374 -11.78760 -11.51759 -11.17730 -10.90913 -10.78766 -10.40611 -10.35946 -10.32102 -10.17277 -9.96948 -9.77593 -9.74174 -9.57206 -9.33714 -8.63219 -8.55398 -6.85499 -6.03077 -3.44437 -0.09453 0.86176 1.29366 2.14703 2.84919 3.03304 3.23992 3.27189 3.42867 3.48156 3.89802 4.33560 4.41805 4.47772 4.61540 4.75435 4.78195 4.83777 4.87393 4.93397 4.95077 5.04044 5.18152 5.22086 5.31886 5.33894 5.45289 5.72016 5.79411 5.89346 5.91866 6.02821 6.07621 6.21414 6.27972 6.37061 6.50749 6.50938 6.67508 6.73140 6.83954 7.28459 7.42452 7.99449 8.02058 8.35648 8.95108 9.67349 10.08008 11.12677 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002632 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.969434 B =10635.309631 C =11463.725183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.025 3.975 5 N -0.461 5.461 6 C 0.114 3.886 7 C -0.278 4.278 8 C 0.605 3.395 9 O -0.525 6.525 10 N -0.610 5.610 11 C 0.088 3.912 12 C -0.126 4.126 13 C -0.114 4.114 14 H 0.095 0.905 15 C 0.150 3.850 16 N -0.611 5.611 17 C 0.121 3.879 18 C -0.268 4.268 19 H 0.079 0.921 20 C 0.035 3.965 21 N -0.899 5.899 22 Si 0.876 3.124 23 H -0.285 1.285 24 H -0.301 1.301 25 H -0.270 1.270 26 C 0.121 3.879 27 S 0.214 5.786 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.190 0.810 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.060 0.940 40 H 0.009 0.991 41 H 0.041 0.959 42 H 0.032 0.968 43 H 0.263 0.737 44 H 0.085 0.915 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.060 11.962 -9.967 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.059 3.941 4 C -0.249 4.249 5 N -0.177 5.177 6 C -0.045 4.045 7 C -0.403 4.403 8 C 0.392 3.608 9 O -0.403 6.403 10 N -0.343 5.343 11 C -0.036 4.036 12 C -0.164 4.164 13 C -0.136 4.136 14 H 0.113 0.887 15 C 0.024 3.976 16 N -0.335 5.335 17 C -0.024 4.024 18 C -0.397 4.397 19 H 0.096 0.904 20 C -0.165 4.165 21 N -0.540 5.540 22 Si 0.706 3.294 23 H -0.213 1.213 24 H -0.229 1.229 25 H -0.195 1.195 26 C 0.000 4.000 27 S 0.472 5.528 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.207 0.793 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.027 0.973 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.994 11.678 -9.764 25.932 hybrid contribution 0.120 0.742 0.088 0.756 sum -20.874 12.420 -9.677 26.146 Atomic orbital electron populations 1.22824 0.79828 1.03481 1.00365 1.87981 1.20438 1.26094 1.95524 1.20807 0.84487 0.86232 1.02590 1.27178 1.00840 1.03608 0.93286 1.66201 1.04803 1.15009 1.31666 1.22161 0.90672 0.96075 0.95543 1.25919 0.98179 1.18213 0.97977 1.16283 0.85921 0.77391 0.81195 1.90858 1.44322 1.50882 1.54283 1.48477 1.10108 1.71552 1.04157 1.22211 0.91552 1.01293 0.88578 1.22681 0.97074 1.02153 0.94537 1.23135 0.94645 1.01560 0.94293 0.88695 1.21113 0.85423 0.95086 0.95993 1.44048 1.16576 1.18740 1.54138 1.21167 0.93000 0.95547 0.92720 1.18792 1.38862 0.87986 0.94055 0.90375 1.25481 0.98465 0.95499 0.97096 1.69883 1.49130 1.16355 1.18602 0.86941 0.77169 0.83713 0.81541 1.21308 1.22907 1.19457 1.22432 0.82652 1.00970 0.93902 1.84197 0.95759 1.63518 1.09344 0.93562 0.88994 0.93586 0.90692 0.89937 0.79280 0.91134 0.90921 0.89560 0.90415 0.93952 0.92198 0.97310 0.94033 0.94886 0.92698 0.89639 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.50 10.69 -35.23 -0.38 -3.88 16 3 C 0.14 1.06 6.51 36.01 0.23 1.30 16 4 C 0.02 0.26 7.01 -13.29 -0.09 0.17 16 5 N -0.46 -5.76 10.51 -11.50 -0.12 -5.88 16 6 C 0.11 1.45 11.09 -18.85 -0.21 1.24 16 7 C -0.28 -3.66 6.40 -37.10 -0.24 -3.90 16 8 C 0.61 9.57 7.82 -12.85 -0.10 9.47 16 9 O -0.53 -9.94 17.12 5.20 0.09 -9.85 16 10 N -0.61 -9.06 3.33 -172.07 -0.57 -9.63 16 11 C 0.09 1.03 5.19 -3.06 -0.02 1.02 16 12 C -0.13 -1.60 6.42 -24.90 -0.16 -1.76 16 13 C -0.11 -1.95 3.29 -88.48 -0.29 -2.24 16 14 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 15 C 0.15 2.98 4.02 -4.04 -0.02 2.96 16 16 N -0.61 -13.98 2.39 -181.12 -0.43 -14.42 16 17 C 0.12 2.38 10.35 59.85 0.62 3.00 16 18 C -0.27 -7.32 9.92 -15.06 -0.15 -7.46 16 19 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 20 C 0.04 0.98 5.29 -17.43 -0.09 0.89 16 21 N -0.90 -26.80 13.97 55.49 0.78 -26.03 16 22 Si 0.88 21.36 25.07 -169.99 -4.26 17.09 16 23 H -0.29 -6.56 6.68 56.52 0.38 -6.18 16 24 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.12 1.98 4.92 -2.54 -0.01 1.97 16 27 S 0.21 2.13 18.65 -107.50 -2.00 0.13 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.19 2.22 8.06 -52.49 -0.42 1.79 16 34 H 0.07 0.68 7.05 -51.93 -0.37 0.31 16 35 H 0.07 0.80 6.85 -51.93 -0.36 0.45 16 36 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 37 H 0.08 0.88 8.04 -51.93 -0.42 0.47 16 38 H 0.04 0.75 8.03 -51.93 -0.42 0.33 16 39 H 0.06 1.31 3.35 -51.93 -0.17 1.13 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 42 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.09 1.59 8.04 -51.93 -0.42 1.17 16 45 H 0.07 1.05 7.21 -51.93 -0.37 0.67 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -33.64 374.22 -7.32 -40.96 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.65 Total: -2.08 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 0.59 Total: 7.93 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.35 Total: -55.95 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.29 Total: -13.73 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.26 Total: 17.09 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.00 Total: 0.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.64 -7.32 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267708545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.877 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds