Wall clock time and date at job start Sat Apr 11 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46832 * 2 1 4 4 C 1.46503 * 120.00444 * 274.93602 * 3 2 1 5 5 C 1.53002 * 109.47074 * 270.00405 * 4 3 2 6 6 N 1.46893 * 109.47429 * 179.97438 * 5 4 3 7 7 C 1.46893 * 111.00511 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47558 * 179.97438 * 7 6 5 9 9 O 1.21291 * 119.99759 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00155 * 179.97438 * 8 7 6 11 11 C 1.37093 * 119.99956 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00040 * 0.02562 * 11 10 8 13 13 C 1.38943 * 120.00067 * 179.97438 * 11 10 8 14 14 N 1.31405 * 120.00234 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 120.00034 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46901 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46872 * 120.00427 * 15 13 11 18 18 H 1.48498 * 109.46963 * 240.00018 * 15 13 11 19 19 C 1.34774 * 120.00033 * 94.94057 * 3 2 1 20 20 O 1.21632 * 120.00511 * 185.53184 * 19 3 2 21 21 C 1.47196 * 119.99798 * 5.52343 * 19 3 2 22 22 C 1.44422 * 123.46153 * 54.71270 * 21 19 3 23 23 C 1.32770 * 113.08485 * 180.02562 * 22 21 19 24 24 S 1.75504 * 110.57521 * 359.97438 * 23 22 21 25 25 C 1.36012 * 123.45980 * 234.75208 * 21 19 3 26 26 C 1.50697 * 124.59436 * 0.22656 * 25 21 19 27 27 H 1.08998 * 109.47098 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47262 * 299.99535 * 1 2 3 29 29 H 1.09000 * 109.47076 * 59.99973 * 1 2 3 30 30 H 1.08995 * 109.46854 * 240.00572 * 2 1 3 31 31 H 1.09000 * 109.47076 * 120.00027 * 2 1 3 32 32 H 1.08997 * 109.46731 * 30.00221 * 4 3 2 33 33 H 1.08995 * 109.47528 * 150.00327 * 4 3 2 34 34 H 1.09008 * 109.46835 * 299.99873 * 5 4 3 35 35 H 1.09000 * 109.47457 * 59.99488 * 5 4 3 36 36 H 1.00903 * 110.99846 * 56.03931 * 6 5 4 37 37 H 1.09000 * 109.47228 * 299.99975 * 7 6 5 38 38 H 1.09010 * 109.47184 * 59.99701 * 7 6 5 39 39 H 0.97000 * 119.99820 * 0.02562 * 10 8 7 40 40 H 0.97001 * 120.00569 * 179.97438 * 14 13 11 41 41 H 1.08000 * 123.45584 * 359.97438 * 22 21 19 42 42 H 1.08002 * 124.71008 * 180.02562 * 23 22 21 43 43 H 1.08990 * 109.47381 * 179.72903 * 26 25 21 44 44 H 1.09001 * 109.47195 * 299.72903 * 26 25 21 45 45 H 1.09003 * 109.47163 * 59.72502 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1595 2.1083 -1.2640 5 6 3.5637 1.8824 -1.8282 6 7 3.7052 2.6109 -3.0958 7 6 5.0442 2.4172 -3.6678 8 6 5.1514 3.1772 -4.9648 9 8 4.2053 3.8176 -5.3723 10 7 6.2987 3.1461 -5.6713 11 6 6.3959 3.8370 -6.8514 12 1 5.5533 4.4066 -7.2147 13 6 7.5788 3.8054 -7.5795 14 7 8.6043 3.1128 -7.1373 15 14 7.7111 4.7463 -9.1879 16 1 6.4272 5.4400 -9.4625 17 1 8.8028 5.7479 -9.0871 18 1 8.0087 3.7993 -10.2923 19 6 2.3376 1.9831 1.1628 20 8 2.6464 3.1595 1.1741 21 6 2.3126 1.2167 2.4193 22 6 3.0447 -0.0124 2.6172 23 6 2.8740 -0.5309 3.8274 24 16 1.7998 0.4751 4.7836 25 6 1.5969 1.5929 3.5130 26 6 0.7368 2.8280 3.5893 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.4189 1.7454 -1.9766 33 1 2.0049 3.1731 -1.0899 34 1 4.3043 2.2453 -1.1155 35 1 3.7183 0.8175 -2.0023 36 1 3.5029 3.5919 -2.9737 37 1 5.7949 2.7846 -2.9680 38 1 5.2098 1.3560 -3.8542 39 1 7.0553 2.6342 -5.3452 40 1 9.4300 3.0904 -7.6458 41 1 3.6665 -0.4637 1.8582 42 1 3.3332 -1.4444 4.1754 43 1 0.2733 2.8877 4.5740 44 1 1.3538 3.7112 3.4241 45 1 -0.0388 2.7784 2.8250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268449223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:19 Heat of formation + Delta-G solvation = -38.622060 kcal Electronic energy + Delta-G solvation = -26339.086476 eV Core-core repulsion = 22483.254783 eV Total energy + Delta-G solvation = -3855.831693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50669 -38.28714 -37.47228 -36.52578 -35.19664 -33.81391 -32.42847 -31.37379 -31.10270 -29.42685 -27.49226 -25.96684 -24.38922 -23.82346 -23.47277 -22.16627 -20.88099 -19.29602 -18.72432 -17.86043 -17.60226 -16.87951 -16.66447 -16.25225 -15.57873 -15.39122 -14.82637 -14.51927 -14.27031 -14.15755 -14.12276 -13.82676 -13.76646 -13.64981 -13.35292 -13.20056 -13.01147 -12.77111 -12.45666 -12.29945 -12.12055 -12.01610 -11.96370 -11.52594 -11.50218 -11.47319 -11.26592 -11.10770 -10.96229 -10.32524 -10.20608 -10.07907 -9.49955 -9.17148 -9.00175 -8.71716 -8.43117 -8.05857 -7.93799 -6.39612 -3.80322 0.51432 1.12583 1.50278 1.76055 2.64076 2.83059 3.18113 3.28445 3.36105 3.93418 4.14501 4.26389 4.31363 4.46419 4.66223 4.72164 4.85601 4.87453 5.02425 5.10775 5.12949 5.19242 5.20414 5.21438 5.29563 5.42438 5.46537 5.53076 5.54119 5.59374 5.69665 5.77887 5.83971 5.87963 5.89823 5.94828 6.01474 6.25954 6.35204 7.14353 7.20117 7.57597 7.65944 7.95016 8.08819 8.63593 9.20149 9.56665 10.08131 10.78271 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025500 B = 0.001793 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.760846 B =15614.876907 C =15799.430110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.603 5.603 4 C 0.117 3.883 5 C 0.046 3.954 6 N -0.666 5.666 7 C 0.052 3.948 8 C 0.442 3.558 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.582 3.418 20 O -0.529 6.529 21 C -0.161 4.161 22 C -0.104 4.104 23 C -0.232 4.232 24 S 0.174 5.826 25 C -0.159 4.159 26 C -0.089 4.089 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.351 0.649 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.267 -11.617 25.679 31.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.336 5.336 4 C -0.006 4.006 5 C -0.084 4.084 6 N -0.299 5.299 7 C -0.080 4.080 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.181 4.181 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.368 3.632 20 O -0.405 6.405 21 C -0.178 4.178 22 C -0.133 4.133 23 C -0.367 4.367 24 S 0.439 5.561 25 C -0.279 4.279 26 C -0.147 4.147 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.170 0.830 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.167 0.833 42 H 0.187 0.813 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.390 -11.185 26.401 32.542 hybrid contribution 1.919 0.504 -1.550 2.518 sum -13.471 -10.682 24.851 30.218 Atomic orbital electron populations 1.22158 0.95656 1.02324 1.02531 1.21785 0.94798 0.82254 1.03801 1.47860 1.64895 1.14668 1.06130 1.21423 0.97364 0.98263 0.83567 1.22258 0.96230 0.99491 0.90462 1.60022 1.27874 1.17345 1.24667 1.21657 0.89604 1.01122 0.95660 1.19797 0.84318 0.86340 0.86835 1.90521 1.38171 1.46497 1.71468 1.41866 1.12430 1.44957 1.20859 1.19759 0.99694 1.26045 0.97253 0.87841 1.25269 0.95083 0.97769 0.99934 1.69619 1.03648 1.41284 1.39818 0.85793 0.78446 0.79011 0.81051 1.19202 1.20789 1.20759 1.17707 0.76533 0.86205 0.82732 1.90821 1.47624 1.15582 1.86488 1.20078 1.04178 0.98040 0.95494 1.21135 1.00656 0.93957 0.97574 1.25412 1.07041 1.05925 0.98324 1.83062 1.43750 1.14299 1.14948 1.24358 1.03410 1.02722 0.97417 1.20431 0.98207 0.93359 1.02705 0.91416 0.92658 0.91990 0.90014 0.89435 0.89219 0.89581 0.95220 0.91107 0.82963 0.93824 0.89629 0.77463 0.91947 0.83261 0.81327 0.91121 0.89227 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 2 C 0.10 0.73 6.05 -4.04 -0.02 0.70 16 3 N -0.60 -6.33 2.47 -175.04 -0.43 -6.76 16 4 C 0.12 1.39 5.73 -4.04 -0.02 1.37 16 5 C 0.05 0.62 6.01 -3.83 -0.02 0.60 16 6 N -0.67 -11.26 6.13 -115.06 -0.70 -11.97 16 7 C 0.05 0.97 6.17 -4.98 -0.03 0.93 16 8 C 0.44 10.73 7.82 -10.98 -0.09 10.64 16 9 O -0.58 -16.19 15.78 5.55 0.09 -16.10 16 10 N -0.56 -14.64 5.29 -10.97 -0.06 -14.70 16 11 C -0.30 -8.46 9.68 -14.94 -0.14 -8.61 16 12 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 15 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.58 7.22 6.93 -12.62 -0.09 7.14 16 20 O -0.53 -8.54 16.15 5.25 0.08 -8.45 16 21 C -0.16 -1.62 4.90 -104.63 -0.51 -2.13 16 22 C -0.10 -0.81 8.15 -39.02 -0.32 -1.13 16 23 C -0.23 -1.46 11.12 28.86 0.32 -1.14 16 24 S 0.17 1.13 22.95 -107.50 -2.47 -1.34 16 25 C -0.16 -1.42 6.34 -35.11 -0.22 -1.64 16 26 C -0.09 -0.71 9.61 36.00 0.35 -0.37 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 31 H 0.09 0.58 4.53 -51.93 -0.24 0.34 16 32 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 33 H 0.09 1.16 7.35 -51.93 -0.38 0.78 16 34 H 0.03 0.43 8.14 -51.92 -0.42 0.01 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.35 6.24 8.43 -39.29 -0.33 5.91 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 39 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.15 0.99 7.75 -52.49 -0.41 0.58 16 42 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 44 H 0.09 0.86 7.91 -51.93 -0.41 0.45 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -34.07 393.75 -9.04 -43.11 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -6.67 Total: 12.06 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.52 Total: 6.07 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.47 Total: -57.61 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.17 Total: -24.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.47 Total: -1.34 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.07 -9.04 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268449223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.492 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds