Wall clock time and date at job start Sat Apr 11 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.46832 * 2 1 4 4 C 1.46503 * 120.00444 * 274.93602 * 3 2 1 5 5 C 1.53002 * 109.47074 * 270.00405 * 4 3 2 6 6 N 1.46893 * 109.47429 * 179.97438 * 5 4 3 7 7 C 1.46893 * 111.00511 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47558 * 179.97438 * 7 6 5 9 9 O 1.21291 * 119.99759 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00155 * 179.97438 * 8 7 6 11 11 C 1.37093 * 119.99956 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00040 * 0.02562 * 11 10 8 13 13 C 1.38943 * 120.00067 * 179.97438 * 11 10 8 14 14 N 1.31405 * 120.00234 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 120.00034 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46901 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46872 * 120.00427 * 15 13 11 18 18 H 1.48498 * 109.46963 * 240.00018 * 15 13 11 19 19 C 1.34774 * 120.00033 * 94.94057 * 3 2 1 20 20 O 1.21632 * 120.00511 * 185.53184 * 19 3 2 21 21 C 1.47196 * 119.99798 * 5.52343 * 19 3 2 22 22 C 1.44422 * 123.46153 * 54.71270 * 21 19 3 23 23 C 1.32770 * 113.08485 * 180.02562 * 22 21 19 24 24 S 1.75504 * 110.57521 * 359.97438 * 23 22 21 25 25 C 1.36012 * 123.45980 * 234.75208 * 21 19 3 26 26 C 1.50697 * 124.59436 * 0.22656 * 25 21 19 27 27 H 1.08998 * 109.47098 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47262 * 299.99535 * 1 2 3 29 29 H 1.09000 * 109.47076 * 59.99973 * 1 2 3 30 30 H 1.08995 * 109.46854 * 240.00572 * 2 1 3 31 31 H 1.09000 * 109.47076 * 120.00027 * 2 1 3 32 32 H 1.08997 * 109.46731 * 30.00221 * 4 3 2 33 33 H 1.08995 * 109.47528 * 150.00327 * 4 3 2 34 34 H 1.09008 * 109.46835 * 299.99873 * 5 4 3 35 35 H 1.09000 * 109.47457 * 59.99488 * 5 4 3 36 36 H 1.00903 * 110.99846 * 56.03931 * 6 5 4 37 37 H 1.09000 * 109.47228 * 299.99975 * 7 6 5 38 38 H 1.09010 * 109.47184 * 59.99701 * 7 6 5 39 39 H 0.97000 * 119.99820 * 0.02562 * 10 8 7 40 40 H 0.97001 * 120.00569 * 179.97438 * 14 13 11 41 41 H 1.08000 * 123.45584 * 359.97438 * 22 21 19 42 42 H 1.08002 * 124.71008 * 180.02562 * 23 22 21 43 43 H 1.08990 * 109.47381 * 179.72903 * 26 25 21 44 44 H 1.09001 * 109.47195 * 299.72903 * 26 25 21 45 45 H 1.09003 * 109.47163 * 59.72502 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1595 2.1083 -1.2640 5 6 3.5637 1.8824 -1.8282 6 7 3.7052 2.6109 -3.0958 7 6 5.0442 2.4172 -3.6678 8 6 5.1514 3.1772 -4.9648 9 8 4.2053 3.8176 -5.3723 10 7 6.2987 3.1461 -5.6713 11 6 6.3959 3.8370 -6.8514 12 1 5.5533 4.4066 -7.2147 13 6 7.5788 3.8054 -7.5795 14 7 8.6043 3.1128 -7.1373 15 14 7.7111 4.7463 -9.1879 16 1 6.4272 5.4400 -9.4625 17 1 8.8028 5.7479 -9.0871 18 1 8.0087 3.7993 -10.2923 19 6 2.3376 1.9831 1.1628 20 8 2.6464 3.1595 1.1741 21 6 2.3126 1.2167 2.4193 22 6 3.0447 -0.0124 2.6172 23 6 2.8740 -0.5309 3.8274 24 16 1.7998 0.4751 4.7836 25 6 1.5969 1.5929 3.5130 26 6 0.7368 2.8280 3.5893 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.4189 1.7454 -1.9766 33 1 2.0049 3.1731 -1.0899 34 1 4.3043 2.2453 -1.1155 35 1 3.7183 0.8175 -2.0023 36 1 3.5029 3.5919 -2.9737 37 1 5.7949 2.7846 -2.9680 38 1 5.2098 1.3560 -3.8542 39 1 7.0553 2.6342 -5.3452 40 1 9.4300 3.0904 -7.6458 41 1 3.6665 -0.4637 1.8582 42 1 3.3332 -1.4444 4.1754 43 1 0.2733 2.8877 4.5740 44 1 1.3538 3.7112 3.4241 45 1 -0.0388 2.7784 2.8250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268449223.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:18 Heat of formation + Delta-G solvation = -62.411277 kcal Electronic energy + Delta-G solvation = -26340.118054 eV Core-core repulsion = 22483.254783 eV Total energy + Delta-G solvation = -3856.863271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36651 -40.18121 -38.22306 -37.55234 -36.48807 -35.79789 -33.30451 -33.01834 -32.14208 -30.44310 -28.51162 -27.35749 -25.82615 -24.62208 -24.38414 -23.15197 -21.62524 -21.11663 -19.96393 -19.52639 -18.22554 -17.88996 -17.70592 -17.46657 -17.07324 -16.51396 -16.35292 -15.95570 -15.47081 -15.35731 -15.11365 -14.78732 -14.74725 -14.71598 -14.36054 -14.19019 -13.94061 -13.70770 -13.54169 -13.44095 -13.37383 -13.09244 -12.96671 -12.76515 -12.71029 -12.58781 -12.41935 -12.13841 -12.11917 -12.10558 -11.81058 -11.53211 -11.00256 -10.41509 -10.03715 -9.85234 -9.74362 -9.46303 -9.29105 -8.48242 -5.97266 -0.10395 0.57764 0.93442 1.10926 1.35899 1.41222 1.55839 1.80354 1.98106 2.02022 2.29065 2.95696 3.18529 3.48026 3.61582 3.70717 3.95919 4.07540 4.08723 4.16665 4.27519 4.34252 4.37825 4.45371 4.45921 4.52399 4.55137 4.57752 4.59340 4.74527 4.83148 4.90690 4.95083 4.98615 4.99711 5.12668 5.29382 5.32879 5.39776 5.47615 5.81135 6.03928 6.24503 6.30973 6.57691 7.04633 7.10529 7.53263 8.08403 8.69411 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.025500 B = 0.001793 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.760846 B =15614.876907 C =15799.430110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.092 3.908 3 N -0.597 5.597 4 C 0.123 3.877 5 C 0.057 3.943 6 N -0.675 5.675 7 C 0.066 3.934 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.269 1.269 19 C 0.578 3.422 20 O -0.579 6.579 21 C -0.182 4.182 22 C -0.118 4.118 23 C -0.223 4.223 24 S 0.218 5.782 25 C -0.180 4.180 26 C -0.088 4.088 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.019 0.981 35 H 0.090 0.910 36 H 0.343 0.657 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.160 0.840 42 H 0.199 0.801 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.121 -13.960 26.797 33.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.328 5.328 4 C -0.001 4.001 5 C -0.073 4.073 6 N -0.307 5.307 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.464 4.464 12 H 0.097 0.903 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.194 1.194 19 C 0.366 3.634 20 O -0.460 6.460 21 C -0.199 4.199 22 C -0.146 4.146 23 C -0.358 4.358 24 S 0.484 5.516 25 C -0.300 4.300 26 C -0.146 4.146 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.109 0.891 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.178 0.822 42 H 0.216 0.784 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.243 -13.593 27.541 34.287 hybrid contribution 1.831 1.184 -1.801 2.828 sum -13.412 -12.409 25.740 31.566 Atomic orbital electron populations 1.22124 0.95036 1.03400 1.01675 1.22040 0.95280 0.80479 1.05124 1.47929 1.64101 1.15685 1.05083 1.21252 0.96889 0.97442 0.84507 1.22247 0.96666 0.99871 0.88563 1.60047 1.26919 1.17149 1.26593 1.21529 0.90982 1.01392 0.92709 1.20804 0.83062 0.85551 0.88080 1.90490 1.39369 1.48133 1.72888 1.41926 1.13185 1.45132 1.20687 1.19715 0.99835 1.27727 0.99084 0.90281 1.26075 0.94278 0.98201 1.02832 1.69676 1.03990 1.41488 1.40938 0.84844 0.78234 0.77971 0.77115 1.19797 1.19618 1.19427 1.18177 0.75563 0.85787 0.83906 1.90786 1.50064 1.17814 1.87300 1.20087 1.05921 0.99201 0.94705 1.21192 1.01264 0.93414 0.98755 1.25801 1.06002 1.06405 0.97556 1.82909 1.42764 1.12757 1.13131 1.24605 1.03511 1.03525 0.98346 1.20403 0.97793 0.92506 1.03886 0.89327 0.93547 0.92816 0.88672 0.88083 0.88053 0.91817 0.96273 0.89122 0.83905 0.92172 0.87203 0.76938 0.91246 0.82222 0.78443 0.88864 0.91469 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 10.24 71.98 0.74 -1.25 16 2 C 0.09 1.23 6.05 86.38 0.52 1.75 16 3 N -0.60 -12.37 2.47 -825.96 -2.04 -14.41 16 4 C 0.12 2.93 5.73 86.38 0.50 3.43 16 5 C 0.06 1.47 6.01 86.31 0.52 1.99 16 6 N -0.67 -22.65 6.13 -517.93 -3.17 -25.82 16 7 C 0.07 2.39 6.17 85.56 0.53 2.92 16 8 C 0.44 21.54 7.82 87.66 0.69 22.23 16 9 O -0.62 -35.55 15.78 -3.06 -0.05 -35.60 16 10 N -0.57 -30.12 5.29 -306.99 -1.62 -31.75 16 11 C -0.33 -19.37 9.68 84.04 0.81 -18.56 16 12 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 13 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 14 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 15 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 19 C 0.58 14.68 6.93 86.60 0.60 15.28 16 20 O -0.58 -19.86 16.15 -4.13 -0.07 -19.92 16 21 C -0.18 -3.56 4.90 -19.87 -0.10 -3.66 16 22 C -0.12 -1.61 8.15 22.67 0.18 -1.42 16 23 C -0.22 -2.13 11.12 66.64 0.74 -1.39 16 24 S 0.22 2.31 22.95 -56.49 -1.30 1.02 16 25 C -0.18 -3.08 6.34 25.17 0.16 -2.92 16 26 C -0.09 -1.44 9.61 71.23 0.68 -0.75 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.04 8.11 -2.39 -0.02 1.02 16 31 H 0.10 1.12 4.53 -2.39 -0.01 1.11 16 32 H 0.10 2.18 8.07 -2.39 -0.02 2.16 16 33 H 0.06 1.83 7.35 -2.39 -0.02 1.81 16 34 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.34 12.50 8.43 -89.69 -0.76 11.74 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 39 H 0.40 19.78 7.90 -92.71 -0.73 19.04 16 40 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.16 1.75 7.75 -2.91 -0.02 1.72 16 42 H 0.20 0.69 8.06 -2.91 -0.02 0.66 16 43 H 0.09 1.02 8.11 -2.39 -0.02 1.00 16 44 H 0.07 1.40 7.91 -2.39 -0.02 1.38 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -75.64 393.75 0.63 -75.01 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.47 Total: 38.52 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 7.04 Total: 17.35 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -6.56 Total: -121.97 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.12 Total: -55.52 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.30 Total: 1.02 kcal Total: -75.64 0.63 -75.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268449223.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.596 kcal (2) G-P(sol) polarization free energy of solvation -75.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds