Wall clock time and date at job start Sat Apr 11 2020 05:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99909 * 2 1 4 4 C 1.53005 * 109.47155 * 66.04299 * 3 2 1 5 5 N 1.46508 * 109.46760 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99855 * 269.99703 * 5 4 3 7 7 C 1.34774 * 119.99630 * 89.99854 * 5 4 3 8 8 O 1.21283 * 120.00315 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99429 * 179.97438 * 7 5 4 10 10 C 1.50703 * 109.46698 * 180.02562 * 9 7 5 11 11 C 1.38425 * 122.53762 * 90.00158 * 10 9 7 12 12 C 1.33390 * 114.92123 * 179.97438 * 11 10 9 13 13 S 1.75891 * 109.59251 * 0.02562 * 12 11 10 14 14 C 1.33383 * 122.54063 * 269.97431 * 10 9 7 15 15 C 1.46895 * 111.00172 * 236.04228 * 2 1 3 16 16 C 1.50698 * 109.46971 * 293.95552 * 15 2 1 17 17 O 1.21290 * 120.00148 * 359.97438 * 16 15 2 18 18 N 1.34775 * 119.99705 * 180.02562 * 16 15 2 19 19 C 1.37096 * 120.00084 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00045 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00254 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00190 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46988 * 59.99925 * 23 21 19 25 25 H 1.48497 * 109.46815 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47138 * 300.00042 * 23 21 19 27 27 H 1.09000 * 109.46671 * 59.99863 * 1 2 3 28 28 H 1.08997 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47548 * 300.00682 * 1 2 3 30 30 H 1.08998 * 109.47280 * 306.03968 * 3 2 1 31 31 H 1.09002 * 109.46844 * 186.04285 * 3 2 1 32 32 H 1.08999 * 109.46995 * 60.00398 * 4 3 2 33 33 H 1.08994 * 109.46902 * 299.99839 * 4 3 2 34 34 H 1.08998 * 109.47388 * 270.00455 * 6 5 4 35 35 H 1.08998 * 109.47076 * 30.00424 * 6 5 4 36 36 H 1.09004 * 109.46806 * 150.00063 * 6 5 4 37 37 H 1.08999 * 109.47203 * 60.00330 * 9 7 5 38 38 H 1.09003 * 109.47454 * 299.99901 * 9 7 5 39 39 H 1.07997 * 122.54292 * 359.71157 * 11 10 9 40 40 H 1.08003 * 125.20243 * 179.97438 * 12 11 10 41 41 H 1.08000 * 125.20529 * 0.06732 * 14 10 9 42 42 H 1.09000 * 109.46977 * 53.95682 * 15 2 1 43 43 H 1.09007 * 109.47043 * 173.95583 * 15 2 1 44 44 H 0.97003 * 120.00516 * 359.97438 * 18 16 15 45 45 H 0.96993 * 120.00400 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 7 2.1570 3.4251 1.3184 6 6 3.5019 3.6928 1.8339 7 6 1.4031 4.4367 0.8444 8 8 0.2895 4.2151 0.4181 9 6 1.9436 5.8435 0.8451 10 6 0.9116 6.7783 0.2684 11 6 -0.0406 7.4095 1.0500 12 6 -0.8785 8.2043 0.3826 13 16 -0.4762 8.1807 -1.3295 14 6 0.8470 7.0604 -1.0336 15 6 1.9955 -0.7660 -1.1375 16 6 1.6369 -2.2204 -0.9726 17 8 1.0054 -2.5832 -0.0028 18 7 2.0189 -3.1181 -1.9025 19 6 1.6923 -4.4412 -1.7529 20 1 1.1293 -4.7642 -0.8896 21 6 2.0857 -5.3667 -2.7117 22 7 2.7704 -4.9738 -3.7623 23 14 1.6413 -7.1696 -2.5074 24 1 0.1640 -7.3124 -2.4557 25 1 2.1740 -7.9440 -3.6570 26 1 2.2329 -7.6855 -1.2469 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.5612 1.9273 -0.8310 31 1 3.0797 1.3444 -0.1082 32 1 2.0657 1.5017 2.1492 33 1 0.5471 2.0845 1.4264 34 1 3.4458 3.9088 2.9008 35 1 4.1333 2.8191 1.6728 36 1 3.9272 4.5498 1.3115 37 1 2.8498 5.8849 0.2409 38 1 2.1743 6.1436 1.8672 39 1 -0.1032 7.2660 2.1186 40 1 -1.6817 8.7745 0.8257 41 1 1.5057 6.6611 -1.7907 42 1 1.5612 -0.3873 -2.0627 43 1 3.0798 -0.6611 -1.1755 44 1 2.5243 -2.8281 -2.6780 45 1 3.0453 -5.6198 -4.4315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271957761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:34 Heat of formation + Delta-G solvation = -19.547279 kcal Electronic energy + Delta-G solvation = -26294.237491 eV Core-core repulsion = 22439.232943 eV Total energy + Delta-G solvation = -3855.004548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35181 -38.64555 -38.09754 -36.62666 -35.40371 -33.82170 -31.83360 -31.21925 -29.96391 -28.24859 -27.61235 -26.86505 -25.24111 -24.14122 -23.19236 -21.20204 -19.68870 -19.10601 -18.83684 -17.87674 -17.81370 -17.32203 -16.44256 -16.27545 -15.74438 -15.22828 -15.18750 -14.59853 -14.48525 -14.06533 -13.90420 -13.69609 -13.34923 -13.32805 -13.26033 -13.00125 -12.90255 -12.74446 -12.60519 -12.36492 -12.15996 -12.05126 -11.83160 -11.48523 -11.27221 -11.18595 -11.04769 -10.88335 -10.73495 -10.42261 -10.19193 -10.02411 -9.44263 -9.05228 -8.93329 -8.63912 -8.38935 -7.95148 -7.82293 -6.39166 -3.79877 0.75767 1.41296 1.72438 2.31712 2.44534 2.87678 3.21840 3.27207 3.31799 3.93696 4.09398 4.30354 4.37610 4.48393 4.62814 4.80375 4.88726 4.97475 5.04621 5.05844 5.13075 5.16357 5.25795 5.30298 5.33230 5.38741 5.53821 5.71794 5.73992 5.78718 5.84470 5.94093 6.00686 6.08887 6.10115 6.16085 6.29383 6.33731 6.63718 7.15137 7.30342 7.42076 7.57433 7.99933 8.08950 8.64813 9.20688 9.57323 10.09489 10.78594 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.001801 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.626132 B =15543.664214 C =16054.449180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.516 5.516 3 C 0.042 3.958 4 C 0.118 3.882 5 N -0.618 5.618 6 C 0.075 3.925 7 C 0.512 3.488 8 O -0.525 6.525 9 C -0.080 4.080 10 C -0.086 4.086 11 C -0.121 4.121 12 C -0.213 4.213 13 S 0.095 5.905 14 C -0.198 4.198 15 C 0.047 3.953 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.015 0.985 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 28.225 7.738 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.240 5.240 3 C -0.087 4.087 4 C -0.004 4.004 5 N -0.352 5.352 6 C -0.068 4.068 7 C 0.299 3.701 8 O -0.401 6.401 9 C -0.122 4.122 10 C -0.098 4.098 11 C -0.151 4.151 12 C -0.349 4.349 13 S 0.359 5.641 14 C -0.334 4.334 15 C -0.084 4.084 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.034 0.966 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.180 0.820 42 H 0.065 0.935 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.533 28.232 7.130 29.123 hybrid contribution 0.611 -1.070 -0.017 1.232 sum 1.144 27.162 7.113 28.101 Atomic orbital electron populations 1.22571 0.86554 1.04260 0.99244 1.61532 1.08918 1.10826 1.42772 1.22426 1.00021 0.89247 0.97031 1.21477 1.00910 0.79935 0.98092 1.47889 1.16652 1.07786 1.62886 1.21863 0.83089 1.02700 0.99151 1.20577 0.85506 0.86528 0.77510 1.90746 1.19536 1.84477 1.45292 1.20407 0.97791 0.90672 1.03356 1.18333 0.98814 0.99810 0.92892 1.19997 0.95793 0.98143 1.01195 1.25534 1.05736 1.07202 0.96379 1.84257 1.28069 1.44280 1.07477 1.25416 1.03667 1.04897 0.99410 1.21853 1.00519 0.94147 0.91910 1.19722 0.85396 0.86605 0.85238 1.90481 1.43860 1.80135 1.31614 1.41860 1.49478 1.07348 1.21483 1.19650 1.32914 0.82302 1.07915 0.87962 1.25262 0.96867 1.00561 0.95315 1.69603 1.38086 1.35828 1.10909 0.85916 0.78898 0.81715 0.77669 1.19931 1.21018 1.19910 0.96625 0.88610 0.92053 0.94846 0.91046 0.89430 0.89560 0.92311 0.90468 0.91039 0.87961 0.87889 0.84422 0.81896 0.82031 0.93517 0.89515 0.77513 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.96 60.07 0.54 0.92 16 2 N -0.52 -8.99 4.50 -244.37 -1.10 -10.09 16 3 C 0.04 0.58 5.28 -3.82 -0.02 0.56 16 4 C 0.12 1.44 5.33 -4.03 -0.02 1.42 16 5 N -0.62 -6.00 2.87 -181.56 -0.52 -6.52 16 6 C 0.08 0.42 10.24 59.85 0.61 1.04 16 7 C 0.51 5.66 7.67 -10.98 -0.08 5.58 16 8 O -0.53 -8.21 15.61 5.56 0.09 -8.12 16 9 C -0.08 -0.58 4.51 -29.03 -0.13 -0.71 16 10 C -0.09 -0.79 4.29 -106.25 -0.46 -1.25 16 11 C -0.12 -1.07 9.98 -41.21 -0.41 -1.48 16 12 C -0.21 -1.78 11.23 29.04 0.33 -1.45 16 13 S 0.10 0.82 23.34 -107.50 -2.51 -1.69 16 14 C -0.20 -1.83 10.98 29.04 0.32 -1.51 16 15 C 0.05 0.88 5.45 -4.98 -0.03 0.85 16 16 C 0.45 10.70 7.47 -10.99 -0.08 10.61 16 17 O -0.58 -15.70 13.91 5.55 0.08 -15.62 16 18 N -0.56 -14.52 5.29 -10.96 -0.06 -14.58 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 23 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.10 2.00 5.82 -51.93 -0.30 1.70 16 29 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 30 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 32 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 33 H 0.09 1.22 5.83 -51.93 -0.30 0.91 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.42 8.07 -51.93 -0.42 0.01 16 36 H 0.07 0.26 6.44 -51.93 -0.33 -0.08 16 37 H 0.10 0.53 7.38 -51.93 -0.38 0.15 16 38 H 0.10 0.51 8.10 -51.93 -0.42 0.09 16 39 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.16 0.99 8.06 -52.48 -0.42 0.56 16 41 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 43 H 0.09 1.44 7.93 -51.92 -0.41 1.02 16 44 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -34.62 388.14 -8.68 -43.30 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.53 Total: 8.77 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 0.32 Total: 6.52 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.95 Total: -55.23 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.16 Total: -23.74 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.62 -8.68 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271957761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.755 kcal (2) G-P(sol) polarization free energy of solvation -34.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds