Wall clock time and date at job start Sat Apr 11 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 110.99909 * 2 1 4 4 C 1.53005 * 109.47155 * 66.04299 * 3 2 1 5 5 N 1.46508 * 109.46760 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99855 * 269.99703 * 5 4 3 7 7 C 1.34774 * 119.99630 * 89.99854 * 5 4 3 8 8 O 1.21283 * 120.00315 * 0.02562 * 7 5 4 9 9 C 1.50704 * 119.99429 * 179.97438 * 7 5 4 10 10 C 1.50703 * 109.46698 * 180.02562 * 9 7 5 11 11 C 1.38425 * 122.53762 * 90.00158 * 10 9 7 12 12 C 1.33390 * 114.92123 * 179.97438 * 11 10 9 13 13 S 1.75891 * 109.59251 * 0.02562 * 12 11 10 14 14 C 1.33383 * 122.54063 * 269.97431 * 10 9 7 15 15 C 1.46895 * 111.00172 * 236.04228 * 2 1 3 16 16 C 1.50698 * 109.46971 * 293.95552 * 15 2 1 17 17 O 1.21290 * 120.00148 * 359.97438 * 16 15 2 18 18 N 1.34775 * 119.99705 * 180.02562 * 16 15 2 19 19 C 1.37096 * 120.00084 * 180.02562 * 18 16 15 20 20 H 1.08006 * 120.00045 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00254 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00190 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46988 * 59.99925 * 23 21 19 25 25 H 1.48497 * 109.46815 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47138 * 300.00042 * 23 21 19 27 27 H 1.09000 * 109.46671 * 59.99863 * 1 2 3 28 28 H 1.08997 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47548 * 300.00682 * 1 2 3 30 30 H 1.08998 * 109.47280 * 306.03968 * 3 2 1 31 31 H 1.09002 * 109.46844 * 186.04285 * 3 2 1 32 32 H 1.08999 * 109.46995 * 60.00398 * 4 3 2 33 33 H 1.08994 * 109.46902 * 299.99839 * 4 3 2 34 34 H 1.08998 * 109.47388 * 270.00455 * 6 5 4 35 35 H 1.08998 * 109.47076 * 30.00424 * 6 5 4 36 36 H 1.09004 * 109.46806 * 150.00063 * 6 5 4 37 37 H 1.08999 * 109.47203 * 60.00330 * 9 7 5 38 38 H 1.09003 * 109.47454 * 299.99901 * 9 7 5 39 39 H 1.07997 * 122.54292 * 359.71157 * 11 10 9 40 40 H 1.08003 * 125.20243 * 179.97438 * 12 11 10 41 41 H 1.08000 * 125.20529 * 0.06732 * 14 10 9 42 42 H 1.09000 * 109.46977 * 53.95682 * 15 2 1 43 43 H 1.09007 * 109.47043 * 173.95583 * 15 2 1 44 44 H 0.97003 * 120.00516 * 359.97438 * 18 16 15 45 45 H 0.96993 * 120.00400 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3183 5 7 2.1570 3.4251 1.3184 6 6 3.5019 3.6928 1.8339 7 6 1.4031 4.4367 0.8444 8 8 0.2895 4.2151 0.4181 9 6 1.9436 5.8435 0.8451 10 6 0.9116 6.7783 0.2684 11 6 -0.0406 7.4095 1.0500 12 6 -0.8785 8.2043 0.3826 13 16 -0.4762 8.1807 -1.3295 14 6 0.8470 7.0604 -1.0336 15 6 1.9955 -0.7660 -1.1375 16 6 1.6369 -2.2204 -0.9726 17 8 1.0054 -2.5832 -0.0028 18 7 2.0189 -3.1181 -1.9025 19 6 1.6923 -4.4412 -1.7529 20 1 1.1293 -4.7642 -0.8896 21 6 2.0857 -5.3667 -2.7117 22 7 2.7704 -4.9738 -3.7623 23 14 1.6413 -7.1696 -2.5074 24 1 0.1640 -7.3124 -2.4557 25 1 2.1740 -7.9440 -3.6570 26 1 2.2329 -7.6855 -1.2469 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.5612 1.9273 -0.8310 31 1 3.0797 1.3444 -0.1082 32 1 2.0657 1.5017 2.1492 33 1 0.5471 2.0845 1.4264 34 1 3.4458 3.9088 2.9008 35 1 4.1333 2.8191 1.6728 36 1 3.9272 4.5498 1.3115 37 1 2.8498 5.8849 0.2409 38 1 2.1743 6.1436 1.8672 39 1 -0.1032 7.2660 2.1186 40 1 -1.6817 8.7745 0.8257 41 1 1.5057 6.6611 -1.7907 42 1 1.5612 -0.3873 -2.0627 43 1 3.0798 -0.6611 -1.1755 44 1 2.5243 -2.8281 -2.6780 45 1 3.0453 -5.6198 -4.4315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271957761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:33 Heat of formation + Delta-G solvation = -43.844578 kcal Electronic energy + Delta-G solvation = -26295.291101 eV Core-core repulsion = 22439.232943 eV Total energy + Delta-G solvation = -3856.058158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16683 -40.36159 -38.88480 -37.97428 -36.41181 -35.81611 -33.28834 -32.55790 -30.94617 -29.32109 -28.74703 -27.63432 -26.84908 -25.47764 -24.01434 -22.41940 -21.02093 -20.42449 -19.85126 -19.49174 -18.51698 -18.11300 -17.86379 -17.29660 -16.80274 -16.54798 -16.49225 -16.15436 -15.73720 -15.62026 -15.21438 -15.04561 -14.44008 -14.27309 -13.98311 -13.91236 -13.77886 -13.66020 -13.51470 -13.44965 -13.23051 -13.15387 -13.02548 -12.86013 -12.63623 -12.55288 -12.48948 -12.41737 -12.12276 -11.85699 -11.66815 -11.45498 -10.89730 -10.33679 -10.00276 -9.70029 -9.66807 -9.30513 -9.28985 -8.45899 -5.94606 0.11426 0.78597 1.09175 1.40034 1.41670 1.52676 1.62159 1.67481 2.04951 2.11858 2.30524 2.85774 3.20425 3.40291 3.70124 3.89356 3.97122 4.06695 4.13598 4.22753 4.33155 4.35361 4.39970 4.46512 4.49852 4.51743 4.57608 4.60682 4.62926 4.75951 4.77321 4.82205 4.93816 5.03836 5.12963 5.15235 5.41269 5.47604 5.49511 5.54511 5.82775 6.01951 6.12926 6.43242 6.60941 7.13197 7.21560 7.56346 8.12223 8.71304 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022223 B = 0.001801 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.626132 B =15543.664214 C =16054.449180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.528 5.528 3 C 0.051 3.949 4 C 0.124 3.876 5 N -0.614 5.614 6 C 0.067 3.933 7 C 0.507 3.493 8 O -0.581 6.581 9 C -0.072 4.072 10 C -0.097 4.097 11 C -0.136 4.136 12 C -0.218 4.218 13 S 0.083 5.917 14 C -0.215 4.215 15 C 0.058 3.942 16 C 0.442 3.558 17 O -0.613 6.613 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.182 0.818 41 H 0.171 0.829 42 H 0.060 0.940 43 H 0.115 0.885 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 29.322 8.273 30.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.252 5.252 3 C -0.078 4.078 4 C 0.001 3.999 5 N -0.347 5.347 6 C -0.074 4.074 7 C 0.296 3.704 8 O -0.460 6.460 9 C -0.113 4.113 10 C -0.109 4.109 11 C -0.166 4.166 12 C -0.353 4.353 13 S 0.347 5.653 14 C -0.350 4.350 15 C -0.073 4.073 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.196 1.196 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.040 0.960 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.199 0.801 41 H 0.188 0.812 42 H 0.078 0.922 43 H 0.133 0.867 44 H 0.229 0.771 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.340 29.362 7.671 30.438 hybrid contribution 0.063 -1.351 -0.142 1.360 sum 2.403 28.011 7.529 29.105 Atomic orbital electron populations 1.22390 0.87272 1.02044 1.00034 1.61506 1.08455 1.13004 1.42274 1.22443 1.00925 0.86854 0.97548 1.21258 0.99709 0.81553 0.97425 1.47970 1.18043 1.06377 1.62279 1.22180 0.80771 1.04061 1.00422 1.21259 0.84835 0.87971 0.76351 1.90725 1.22021 1.85410 1.47847 1.20480 0.97838 0.87508 1.05516 1.18640 0.99353 0.99974 0.92978 1.20283 0.95968 0.98310 1.02062 1.25853 1.06136 1.07246 0.96062 1.84248 1.28355 1.44483 1.08211 1.25664 1.04094 1.05324 0.99956 1.21745 1.02254 0.90347 0.92945 1.20686 0.83801 0.88594 0.83988 1.90460 1.45084 1.81371 1.32956 1.41923 1.50031 1.07066 1.22119 1.19628 1.34429 0.83987 1.08145 0.90247 1.26053 0.96283 1.04383 0.94670 1.69665 1.38074 1.37255 1.11182 0.84981 0.78558 0.76702 0.78042 1.19831 1.19496 1.19605 0.96485 0.92102 0.90713 0.95995 0.88841 0.88484 0.92045 0.90668 0.90053 0.88365 0.85278 0.84998 0.83112 0.80060 0.81168 0.92223 0.86694 0.77053 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.96 127.69 1.14 2.26 16 2 N -0.53 -18.00 4.50 -927.04 -4.17 -22.17 16 3 C 0.05 1.32 5.28 86.30 0.46 1.78 16 4 C 0.12 2.85 5.33 86.38 0.46 3.31 16 5 N -0.61 -10.46 2.87 -846.73 -2.43 -12.89 16 6 C 0.07 0.50 10.24 127.77 1.31 1.81 16 7 C 0.51 10.33 7.67 87.66 0.67 11.00 16 8 O -0.58 -18.07 15.61 -3.04 -0.05 -18.12 16 9 C -0.07 -0.84 4.51 29.10 0.13 -0.71 16 10 C -0.10 -1.63 4.29 -20.92 -0.09 -1.72 16 11 C -0.14 -2.25 9.98 21.22 0.21 -2.03 16 12 C -0.22 -3.44 11.23 66.72 0.75 -2.69 16 13 S 0.08 1.41 23.34 -56.49 -1.32 0.09 16 14 C -0.21 -3.77 10.98 66.72 0.73 -3.04 16 15 C 0.06 2.11 5.45 85.56 0.47 2.58 16 16 C 0.44 21.52 7.47 87.66 0.66 22.17 16 17 O -0.61 -34.30 13.91 -3.06 -0.04 -34.34 16 18 N -0.57 -29.95 5.29 -306.99 -1.62 -31.57 16 19 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 22 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 23 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 2.64 5.82 -2.39 -0.01 2.63 16 29 H 0.07 2.46 6.47 -2.39 -0.02 2.44 16 30 H 0.02 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.09 2.02 7.93 -2.39 -0.02 2.00 16 32 H 0.10 2.03 8.07 -2.39 -0.02 2.01 16 33 H 0.06 1.73 5.83 -2.39 -0.01 1.72 16 34 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.08 0.58 8.07 -2.39 -0.02 0.57 16 36 H 0.10 0.23 6.44 -2.38 -0.02 0.22 16 37 H 0.13 0.82 7.38 -2.39 -0.02 0.80 16 38 H 0.13 0.79 8.10 -2.39 -0.02 0.77 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 42 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 43 H 0.12 3.53 7.93 -2.38 -0.02 3.51 16 44 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 45 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -77.24 388.14 1.13 -76.11 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.28 Total: 31.24 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 8.18 Total: 16.14 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -7.94 Total: -116.47 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.09 Total: -52.46 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.09 kcal Total: -77.24 1.13 -76.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271957761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.261 kcal (2) G-P(sol) polarization free energy of solvation -77.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds