Wall clock time and date at job start Sat Apr 11 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99761 * 2 1 4 4 C 1.52993 * 109.47128 * 66.04622 * 3 2 1 5 5 C 1.52996 * 109.47060 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47397 * 179.97438 * 5 4 3 7 7 C 1.46498 * 120.00376 * 270.00426 * 6 5 4 8 8 C 1.34779 * 119.99902 * 90.00100 * 6 5 4 9 9 O 1.21633 * 119.99933 * 4.22283 * 8 6 5 10 10 C 1.47193 * 119.99958 * 184.22195 * 8 6 5 11 11 C 1.44420 * 123.46243 * 326.15474 * 10 8 6 12 12 C 1.32771 * 113.08558 * 179.97438 * 11 10 8 13 13 S 1.75507 * 110.57400 * 359.77747 * 12 11 10 14 14 C 1.36005 * 123.45816 * 146.12891 * 10 8 6 15 15 C 1.46893 * 111.00002 * 236.04151 * 2 1 3 16 16 C 1.50694 * 109.47626 * 293.95403 * 15 2 1 17 17 O 1.21293 * 120.00078 * 0.02562 * 16 15 2 18 18 N 1.34780 * 120.00420 * 179.97438 * 16 15 2 19 19 C 1.37093 * 120.00305 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99894 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00032 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00033 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00037 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47379 * 90.00079 * 23 21 19 25 25 H 1.48501 * 109.47051 * 210.00127 * 23 21 19 26 26 H 1.48502 * 109.47406 * 330.00075 * 23 21 19 27 27 H 1.08999 * 109.47229 * 59.99813 * 1 2 3 28 28 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47212 * 299.99944 * 1 2 3 30 30 H 1.08997 * 109.46981 * 306.04354 * 3 2 1 31 31 H 1.09002 * 109.46531 * 186.04635 * 3 2 1 32 32 H 1.09007 * 109.47416 * 60.00150 * 4 3 2 33 33 H 1.08997 * 109.47712 * 299.99821 * 4 3 2 34 34 H 1.08999 * 109.47384 * 60.00349 * 5 4 3 35 35 H 1.09000 * 109.47464 * 299.99807 * 5 4 3 36 36 H 1.09004 * 109.47022 * 264.14698 * 7 6 5 37 37 H 1.09003 * 109.46643 * 24.13838 * 7 6 5 38 38 H 1.08999 * 109.47499 * 144.13807 * 7 6 5 39 39 H 1.08000 * 123.45821 * 359.97438 * 11 10 8 40 40 H 1.07996 * 124.70877 * 179.97438 * 12 11 10 41 41 H 1.08002 * 124.59636 * 359.97438 * 14 10 8 42 42 H 1.09010 * 109.47157 * 53.95880 * 15 2 1 43 43 H 1.09004 * 109.46850 * 173.94981 * 15 2 1 44 44 H 0.97007 * 119.99785 * 359.97438 * 18 16 15 45 45 H 0.96996 * 119.99970 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1802 3.4856 1.3184 6 7 1.8312 4.1427 2.5804 7 6 0.5747 4.8871 2.6958 8 6 2.6661 4.0624 3.6355 9 8 3.7435 3.5105 3.5177 10 6 2.2740 4.6427 4.9301 11 6 1.4719 5.8370 5.0573 12 6 1.2407 6.1768 6.3197 13 16 1.9979 5.0333 7.4149 14 6 2.6294 4.1090 6.1295 15 6 1.9954 -0.7660 -1.1375 16 6 1.6370 -2.2204 -0.9727 17 8 1.0047 -2.5832 -0.0033 18 7 2.0181 -3.1181 -1.9031 19 6 1.6915 -4.4411 -1.7535 20 1 1.1292 -4.7642 -0.8899 21 6 2.0849 -5.3665 -2.7124 22 7 1.7723 -6.6348 -2.5687 23 14 3.0581 -4.8078 -4.2058 24 1 4.5105 -4.8751 -3.9037 25 1 2.7503 -5.6940 -5.3570 26 1 2.6871 -3.4102 -4.5439 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.5611 1.9273 -0.8309 31 1 3.0797 1.3444 -0.1083 32 1 2.0658 1.5016 2.1492 33 1 0.5472 2.0845 1.4265 34 1 1.7462 4.0418 0.4876 35 1 3.2645 3.4583 1.2104 36 1 0.7611 5.9453 2.5126 37 1 -0.1386 4.5116 1.9620 38 1 0.1666 4.7582 3.6982 39 1 1.0985 6.3963 4.2122 40 1 0.6638 7.0356 6.6296 41 1 3.2267 3.2174 6.2511 42 1 1.5611 -0.3873 -2.0628 43 1 3.0798 -0.6611 -1.1755 44 1 2.5228 -2.8278 -2.6790 45 1 2.0466 -7.2808 -3.2383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273481428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:43 Heat of formation + Delta-G solvation = -40.171453 kcal Electronic energy + Delta-G solvation = -26153.181450 eV Core-core repulsion = 22297.282570 eV Total energy + Delta-G solvation = -3855.898880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23955 -40.50882 -38.39964 -37.81004 -36.81384 -35.92324 -33.76719 -33.13263 -30.77692 -29.62917 -28.33543 -27.49396 -26.79520 -25.49564 -23.74943 -21.95996 -21.55120 -21.25524 -20.18386 -20.01710 -18.90208 -17.87782 -17.41161 -17.27244 -16.86329 -16.74317 -16.42098 -16.12926 -15.80143 -15.61512 -15.17525 -14.84581 -14.72772 -14.52166 -14.28025 -14.10565 -13.87146 -13.81193 -13.69950 -13.51928 -13.15815 -13.02632 -12.90901 -12.76956 -12.71232 -12.49758 -12.42361 -12.32989 -11.97528 -11.82925 -11.53513 -11.47354 -11.04557 -10.38019 -10.23663 -10.03298 -9.70214 -9.35910 -9.17524 -8.41488 -6.02221 -0.15689 0.60801 0.95288 1.08117 1.29498 1.35629 1.44095 1.93159 1.95742 2.21065 2.22865 2.65482 3.14248 3.26734 3.61074 3.86979 3.95619 4.07358 4.08254 4.24172 4.33220 4.35592 4.39421 4.41943 4.46967 4.51527 4.59108 4.61808 4.67339 4.70140 4.80582 4.87633 4.94488 5.09540 5.11154 5.17291 5.28227 5.29962 5.53133 5.55534 5.90490 6.03309 6.23496 6.30409 6.60144 6.88519 7.07087 7.39832 7.97743 8.76283 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024768 B = 0.001741 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.215605 B =16074.345909 C =16409.405965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.550 5.550 3 C 0.063 3.937 4 C -0.119 4.119 5 C 0.120 3.880 6 N -0.606 5.606 7 C 0.065 3.935 8 C 0.568 3.432 9 O -0.587 6.587 10 C -0.179 4.179 11 C -0.121 4.121 12 C -0.225 4.225 13 S 0.217 5.783 14 C -0.214 4.214 15 C 0.055 3.945 16 C 0.450 3.550 17 O -0.607 6.607 18 N -0.592 5.592 19 C -0.328 4.328 20 H 0.054 0.946 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.230 1.230 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.180 0.820 40 H 0.202 0.798 41 H 0.158 0.842 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.389 0.611 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 35.941 10.577 37.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.275 5.275 3 C -0.065 4.065 4 C -0.158 4.158 5 C -0.003 4.003 6 N -0.337 5.337 7 C -0.077 4.077 8 C 0.356 3.644 9 O -0.468 6.468 10 C -0.197 4.197 11 C -0.149 4.149 12 C -0.360 4.360 13 S 0.483 5.517 14 C -0.352 4.352 15 C -0.076 4.076 16 C 0.238 3.762 17 O -0.491 6.491 18 N -0.234 5.234 19 C -0.457 4.457 20 H 0.072 0.928 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.154 1.154 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.197 0.803 40 H 0.219 0.781 41 H 0.176 0.824 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.225 0.775 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.623 34.884 13.091 37.295 hybrid contribution 0.291 -0.682 -2.854 2.949 sum -1.332 34.201 10.237 35.725 Atomic orbital electron populations 1.22411 0.86817 1.01948 1.00808 1.61426 1.09050 1.14214 1.42807 1.22077 1.00620 0.86580 0.97182 1.21807 1.01466 0.95335 0.97221 1.21491 1.01309 0.92114 0.85398 1.47797 1.21725 1.52400 1.11772 1.22455 0.84108 0.96711 1.04380 1.18193 0.83438 0.78438 0.84304 1.90785 1.24468 1.46719 1.84855 1.20340 1.06301 1.00479 0.92614 1.21709 0.98744 0.95312 0.99157 1.25970 1.08174 1.05924 0.95939 1.83037 1.44866 1.16765 1.07040 1.25704 1.05417 1.06146 0.97974 1.21822 1.02643 0.89226 0.93882 1.20952 0.82916 0.88957 0.83419 1.90514 1.44226 1.81486 1.32894 1.42039 1.51901 1.06797 1.22697 1.18991 1.34831 0.83136 1.08721 0.92813 1.26132 0.98668 0.94662 1.02039 1.69807 1.47249 1.03000 1.37527 0.85349 0.78913 0.80190 0.76958 1.18289 1.19899 1.15365 0.94250 0.93272 0.90699 0.91917 0.90282 0.94578 0.90934 0.86723 0.91259 0.89717 0.89112 0.90080 0.80293 0.78060 0.82439 0.89998 0.86571 0.77504 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 8.96 127.69 1.14 2.01 16 2 N -0.55 -17.52 4.50 -927.05 -4.17 -21.69 16 3 C 0.06 1.40 4.96 86.30 0.43 1.83 16 4 C -0.12 -2.60 5.46 30.59 0.17 -2.43 16 5 C 0.12 2.06 5.41 86.38 0.47 2.52 16 6 N -0.61 -10.58 2.87 -850.92 -2.45 -13.03 16 7 C 0.06 0.53 8.87 127.77 1.13 1.66 16 8 C 0.57 13.89 7.51 86.60 0.65 14.54 16 9 O -0.59 -19.91 16.51 -4.14 -0.07 -19.97 16 10 C -0.18 -3.40 5.38 -19.87 -0.11 -3.51 16 11 C -0.12 -1.29 8.03 22.67 0.18 -1.11 16 12 C -0.23 -1.75 11.12 66.64 0.74 -1.01 16 13 S 0.22 2.37 23.02 -56.49 -1.30 1.07 16 14 C -0.21 -3.98 10.67 67.30 0.72 -3.26 16 15 C 0.06 1.79 5.45 85.56 0.47 2.26 16 16 C 0.45 21.14 7.48 87.65 0.66 21.79 16 17 O -0.61 -34.82 13.91 -3.07 -0.04 -34.87 16 18 N -0.59 -28.78 5.09 -306.99 -1.56 -30.34 16 19 C -0.33 -19.65 10.16 84.04 0.85 -18.80 16 20 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 21 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 22 N -0.94 -57.35 13.96 21.66 0.30 -57.05 16 23 Si 0.97 39.52 27.74 68.60 1.90 41.42 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 2.00 5.82 -2.38 -0.01 1.98 16 29 H 0.07 2.06 6.47 -2.39 -0.02 2.04 16 30 H 0.06 1.04 8.12 -2.39 -0.02 1.02 16 31 H 0.08 1.71 7.93 -2.39 -0.02 1.69 16 32 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 1.45 6.55 -2.39 -0.02 1.44 16 34 H 0.11 1.14 8.07 -2.39 -0.02 1.12 16 35 H 0.07 1.48 7.37 -2.39 -0.02 1.46 16 36 H 0.08 0.28 6.98 -2.38 -0.02 0.26 16 37 H 0.09 0.49 8.03 -2.39 -0.02 0.47 16 38 H 0.08 0.65 5.76 -2.39 -0.01 0.64 16 39 H 0.18 0.90 5.48 -2.91 -0.02 0.89 16 40 H 0.20 0.20 8.06 -2.91 -0.02 0.18 16 41 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.08 2.15 8.12 -2.38 -0.02 2.13 16 43 H 0.12 3.18 7.93 -2.38 -0.02 3.16 16 44 H 0.39 15.63 5.76 -92.70 -0.53 15.09 16 45 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -88.93 379.78 1.01 -87.92 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.43 Total: 30.52 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 7.97 Total: 16.03 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -7.88 Total: -122.12 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -0.11 Total: -54.84 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.90 Total: 41.42 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.30 Total: 1.07 kcal Total: -88.93 1.01 -87.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273481428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.746 kcal (2) G-P(sol) polarization free energy of solvation -88.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds