Wall clock time and date at job start Sat Apr 11 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36930 * 120.00327 * 2 1 4 4 H 1.07996 * 120.00341 * 202.34569 * 3 2 1 5 5 C 1.38820 * 119.99694 * 22.35064 * 3 2 1 6 6 N 1.31616 * 120.00124 * 11.33944 * 5 3 2 7 7 Si 1.86805 * 119.99727 * 191.34490 * 5 3 2 8 8 H 1.48503 * 109.46813 * 89.99622 * 7 5 3 9 9 H 1.48497 * 109.46905 * 209.99705 * 7 5 3 10 10 H 1.48496 * 109.46901 * 329.99648 * 7 5 3 11 11 C 1.46499 * 119.99715 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46973 * 269.99929 * 11 2 1 13 13 C 1.53006 * 109.47015 * 180.02562 * 12 11 2 14 14 N 1.46499 * 109.46958 * 180.02562 * 13 12 11 15 15 C 1.46500 * 119.99890 * 269.99694 * 14 13 12 16 16 C 1.34774 * 120.00165 * 89.99770 * 14 13 12 17 17 O 1.21284 * 119.99968 * 359.97438 * 16 14 13 18 18 C 1.50705 * 120.00197 * 179.97438 * 16 14 13 19 19 N 1.46499 * 109.47193 * 179.97438 * 18 16 14 20 20 C 1.34777 * 119.99563 * 179.97438 * 19 18 16 21 21 O 1.21691 * 120.00294 * 0.02562 * 20 19 18 22 22 C 1.46590 * 119.99420 * 180.02562 * 20 19 18 23 23 C 1.36648 * 125.45567 * 180.02562 * 22 20 19 24 24 C 1.37473 * 113.29840 * 180.02562 * 23 22 20 25 25 C 1.33816 * 115.09717 * 359.97438 * 24 23 22 26 26 S 1.70616 * 110.95741 * 0.02562 * 25 24 23 27 27 H 1.09006 * 109.46863 * 274.21106 * 1 2 3 28 28 H 1.09001 * 109.47350 * 34.20809 * 1 2 3 29 29 H 1.08999 * 109.47390 * 154.20845 * 1 2 3 30 30 H 0.96999 * 119.99791 * 180.02562 * 6 5 3 31 31 H 1.09001 * 109.47611 * 150.00010 * 11 2 1 32 32 H 1.08998 * 109.47591 * 29.99484 * 11 2 1 33 33 H 1.08998 * 109.47484 * 60.00088 * 12 11 2 34 34 H 1.08998 * 109.47165 * 299.99653 * 12 11 2 35 35 H 1.08998 * 109.47235 * 59.99553 * 13 12 11 36 36 H 1.09003 * 109.46987 * 299.99771 * 13 12 11 37 37 H 1.09000 * 109.46855 * 270.00106 * 15 14 13 38 38 H 1.08999 * 109.47128 * 30.00205 * 15 14 13 39 39 H 1.09000 * 109.47194 * 149.99994 * 15 14 13 40 40 H 1.09001 * 109.46769 * 59.99846 * 18 16 14 41 41 H 1.09001 * 109.46600 * 300.00057 * 18 16 14 42 42 H 0.97005 * 120.00021 * 0.02562 * 19 18 16 43 43 H 1.08008 * 123.34861 * 0.26780 * 23 22 20 44 44 H 1.07993 * 122.45004 * 180.02562 * 24 23 22 45 45 H 1.08004 * 124.52047 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2209 -0.3556 5 6 1.5338 2.3429 0.4572 6 7 0.3842 2.2690 1.0937 7 14 2.3368 4.0047 0.1689 8 1 1.8680 4.5631 -1.1249 9 1 1.9683 4.9302 1.2702 10 1 3.8123 3.8417 0.1320 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4418 13 6 3.2179 -3.0358 1.4412 14 7 3.4615 -3.4596 2.8223 15 6 4.6819 -3.0368 3.5138 16 6 2.5630 -4.2385 3.4566 17 8 1.5525 -4.5882 2.8843 18 6 2.8138 -4.6749 4.8771 19 7 1.6988 -5.5066 5.3366 20 6 1.7064 -6.0138 6.5853 21 8 2.6392 -5.7806 7.3311 22 6 0.5909 -6.8464 7.0448 23 6 0.4836 -7.4150 8.2828 24 6 -0.6678 -8.1480 8.4466 25 6 -1.4769 -8.1795 7.3812 26 16 -0.8233 -7.2739 6.0914 27 1 -0.3633 0.0755 1.0250 28 1 -0.3634 0.8499 -0.5777 29 1 -0.3634 -0.9253 -0.4471 30 1 -0.0463 3.0776 1.4128 31 1 3.1499 -1.1383 -0.5143 32 1 1.6083 -2.0282 -0.5146 33 1 1.5000 -1.8416 1.9556 34 1 3.0416 -0.9517 1.9559 35 1 4.1703 -2.9049 0.9275 36 1 2.6291 -3.7955 0.9269 37 1 5.4694 -3.7706 3.3423 38 1 4.9992 -2.0670 3.1305 39 1 4.4850 -2.9582 4.5829 40 1 2.8996 -3.7968 5.5172 41 1 3.7390 -5.2495 4.9226 42 1 0.9554 -5.6928 4.7419 43 1 1.2274 -7.2968 9.0569 44 1 -0.9025 -8.6602 9.3679 45 1 -2.4182 -8.7078 7.3430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273583754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:46 Heat of formation + Delta-G solvation = -31.327580 kcal Electronic energy + Delta-G solvation = -26238.409650 eV Core-core repulsion = 22382.894269 eV Total energy + Delta-G solvation = -3855.515380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48190 -40.48948 -38.45576 -37.96081 -36.82723 -35.69437 -34.09374 -32.23780 -31.22649 -29.16070 -28.11328 -27.84009 -26.58813 -25.54851 -23.80604 -22.41677 -21.95365 -20.97027 -20.09624 -19.68174 -18.76754 -17.95564 -17.68845 -17.24955 -16.96674 -16.71151 -16.60278 -16.12498 -15.82049 -15.70991 -15.26029 -14.86181 -14.77935 -14.48668 -14.30369 -14.09402 -13.91541 -13.70502 -13.55304 -13.27396 -13.24635 -13.19360 -13.01458 -12.74127 -12.53486 -12.46315 -12.26634 -12.02614 -11.93478 -11.87871 -11.41473 -11.38488 -11.09190 -10.65024 -10.49589 -9.89105 -9.76672 -9.58476 -8.79050 -7.82180 -5.30698 -0.53370 0.45972 0.92289 1.35507 1.40049 1.46289 1.48034 1.56602 1.60564 2.07109 2.21049 2.51508 3.28420 3.32813 3.69638 3.70314 4.07646 4.12282 4.14647 4.21366 4.31237 4.33779 4.38255 4.53159 4.55825 4.59930 4.71728 4.79623 4.84632 4.90908 4.91732 4.99569 5.03264 5.19152 5.26509 5.28681 5.35072 5.40854 5.54554 5.64507 5.69869 6.19637 6.25715 6.33427 6.87654 6.95500 7.14784 7.87367 8.32570 9.22151 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015986 B = 0.002071 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.105723 B =13519.607667 C =14041.603932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.622 5.622 3 C -0.257 4.257 4 H 0.078 0.922 5 C -0.061 4.061 6 N -0.944 5.944 7 Si 0.972 3.028 8 H -0.287 1.287 9 H -0.298 1.298 10 H -0.263 1.263 11 C 0.151 3.849 12 C -0.131 4.131 13 C 0.126 3.874 14 N -0.606 5.606 15 C 0.064 3.936 16 C 0.503 3.497 17 O -0.573 6.573 18 C 0.107 3.893 19 N -0.716 5.716 20 C 0.594 3.406 21 O -0.564 6.564 22 C -0.306 4.306 23 C -0.051 4.051 24 C -0.158 4.158 25 C -0.215 4.215 26 S 0.213 5.787 27 H -0.004 1.004 28 H 0.019 0.981 29 H 0.025 0.975 30 H 0.246 0.754 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.021 0.979 34 H 0.044 0.956 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.410 0.590 43 H 0.155 0.845 44 H 0.173 0.827 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -23.536 11.873 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.345 5.345 3 C -0.387 4.387 4 H 0.095 0.905 5 C -0.255 4.255 6 N -0.591 5.591 7 Si 0.800 3.200 8 H -0.214 1.214 9 H -0.225 1.225 10 H -0.188 1.188 11 C 0.025 3.975 12 C -0.173 4.173 13 C 0.003 3.997 14 N -0.338 5.338 15 C -0.077 4.077 16 C 0.291 3.709 17 O -0.454 6.454 18 C -0.020 4.020 19 N -0.370 5.370 20 C 0.382 3.618 21 O -0.445 6.445 22 C -0.426 4.426 23 C -0.086 4.086 24 C -0.188 4.188 25 C -0.353 4.353 26 S 0.480 5.520 27 H 0.014 0.986 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.248 0.752 43 H 0.173 0.827 44 H 0.191 0.809 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.953 -23.082 10.608 25.574 hybrid contribution 0.010 0.970 1.288 1.613 sum 2.962 -22.113 11.896 25.284 Atomic orbital electron populations 1.20499 0.83223 0.95762 0.97131 1.44254 1.02043 1.02133 1.86059 1.19603 0.98234 0.86382 1.34479 0.90471 1.25879 0.98554 1.02151 0.98945 1.70268 1.19511 1.27328 1.42039 0.85193 0.78617 0.79569 0.76643 1.21397 1.22497 1.18786 1.20936 0.96181 0.86496 0.93880 1.22317 0.98484 0.96417 1.00057 1.21506 1.01539 0.95110 0.81564 1.47936 1.21944 1.49017 1.14868 1.22188 0.85325 1.02112 0.98090 1.20772 0.82975 0.78493 0.88700 1.90683 1.28403 1.57942 1.68328 1.21217 0.91734 0.97335 0.91712 1.45641 1.24730 1.52002 1.14585 1.17150 0.85156 0.78597 0.80869 1.90796 1.36875 1.61452 1.55371 1.24515 1.02706 1.13440 1.01964 1.21062 0.98469 0.93960 0.95082 1.20304 0.93864 1.03053 1.01627 1.25818 1.06454 1.05371 0.97675 1.83381 1.10374 1.43439 1.14796 0.98578 0.96232 0.95620 0.94487 0.92045 0.92961 0.96041 0.93711 0.87445 0.90671 0.89339 0.90095 0.89734 0.87386 0.85982 0.75181 0.82740 0.80932 0.78332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.39 9.01 127.77 1.15 10.55 16 2 N -0.62 -31.95 2.93 -726.93 -2.13 -34.08 16 3 C -0.26 -14.11 9.67 84.04 0.81 -13.30 16 4 H 0.08 4.02 7.84 -2.91 -0.02 3.99 16 5 C -0.06 -3.47 5.13 84.86 0.44 -3.03 16 6 N -0.94 -57.48 10.58 21.65 0.23 -57.25 16 7 Si 0.97 45.32 29.57 68.60 2.03 47.34 16 8 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 9 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 10 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 11 C 0.15 6.03 5.71 86.38 0.49 6.52 16 12 C -0.13 -4.85 5.86 30.60 0.18 -4.67 16 13 C 0.13 3.36 5.41 86.38 0.47 3.83 16 14 N -0.61 -14.43 2.87 -846.74 -2.43 -16.87 16 15 C 0.06 1.01 10.24 127.77 1.31 2.31 16 16 C 0.50 13.42 7.74 87.66 0.68 14.09 16 17 O -0.57 -19.44 15.25 -3.04 -0.05 -19.48 16 18 C 0.11 2.31 4.71 85.63 0.40 2.71 16 19 N -0.72 -17.14 5.52 -470.90 -2.60 -19.74 16 20 C 0.59 15.06 7.78 86.42 0.67 15.73 16 21 O -0.56 -17.00 16.84 -4.32 -0.07 -17.08 16 22 C -0.31 -6.40 6.45 24.08 0.16 -6.24 16 23 C -0.05 -0.89 10.01 21.72 0.22 -0.67 16 24 C -0.16 -1.93 10.15 21.08 0.21 -1.71 16 25 C -0.22 -2.43 10.92 66.81 0.73 -1.70 16 26 S 0.21 3.38 22.16 -56.49 -1.25 2.13 16 27 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 28 H 0.02 1.08 7.19 -2.39 -0.02 1.06 16 29 H 0.03 1.16 7.84 -2.39 -0.02 1.14 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 32 H 0.05 1.92 7.86 -2.39 -0.02 1.90 16 33 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.11 2.23 8.07 -2.39 -0.02 2.21 16 36 H 0.07 2.14 7.42 -2.39 -0.02 2.12 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 39 H 0.08 1.13 6.44 -2.39 -0.02 1.11 16 40 H 0.11 2.24 7.40 -2.39 -0.02 2.22 16 41 H 0.12 2.12 8.11 -2.39 -0.02 2.10 16 42 H 0.41 9.93 6.55 -92.70 -0.61 9.32 16 43 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 44 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -76.87 391.00 2.04 -74.84 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.39 Total: 15.77 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: 7.92 Total: 24.41 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -6.93 Total: -127.94 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -0.12 Total: -36.56 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.25 Total: 2.13 kcal Total: -76.87 2.04 -74.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273583754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.509 kcal (2) G-P(sol) polarization free energy of solvation -76.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds