Wall clock time and date at job start Sat Apr 11 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00283 * 2 1 4 4 C 1.53000 * 109.47337 * 89.99818 * 3 2 1 5 5 H 1.08999 * 109.47103 * 60.00617 * 4 3 2 6 6 O 1.42894 * 109.47296 * 300.00375 * 4 3 2 7 7 C 1.53004 * 109.47269 * 180.02562 * 4 3 2 8 8 N 1.46900 * 109.47317 * 185.00266 * 7 4 3 9 9 C 1.46898 * 110.99840 * 180.02562 * 8 7 4 10 10 C 1.50707 * 109.46592 * 180.02562 * 9 8 7 11 11 C 1.38227 * 119.62024 * 94.97729 * 10 9 8 12 12 C 1.38627 * 119.15702 * 179.78495 * 11 10 9 13 13 C 1.38669 * 118.42389 * 0.47826 * 12 11 10 14 14 C 1.38186 * 119.16143 * 359.49762 * 13 12 11 15 15 N 1.31856 * 119.61172 * 274.99481 * 10 9 8 16 16 C 1.34779 * 120.00048 * 179.97438 * 2 1 3 17 17 O 1.21286 * 120.00088 * 179.97438 * 16 2 1 18 18 C 1.50696 * 119.99715 * 0.02562 * 16 2 1 19 19 S 1.81004 * 109.47081 * 179.97438 * 18 16 2 20 20 C 1.76195 * 100.00027 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00471 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00204 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99856 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00486 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46887 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47247 * 119.99710 * 24 22 20 27 27 H 1.48502 * 109.47103 * 240.00160 * 24 22 20 28 28 H 1.09004 * 109.47050 * 89.99623 * 1 2 3 29 29 H 1.08993 * 109.47147 * 210.00664 * 1 2 3 30 30 H 1.09001 * 109.46768 * 330.00033 * 1 2 3 31 31 H 1.09005 * 109.46946 * 329.99971 * 3 2 1 32 32 H 1.09001 * 109.47406 * 210.00013 * 3 2 1 33 33 H 0.96705 * 113.99711 * 300.00181 * 6 4 3 34 34 H 1.09001 * 109.46861 * 64.99637 * 7 4 3 35 35 H 1.09005 * 109.46871 * 305.00158 * 7 4 3 36 36 H 1.00901 * 110.99948 * 56.04136 * 8 7 4 37 37 H 1.08993 * 109.47549 * 59.99729 * 9 8 7 38 38 H 1.08997 * 109.47171 * 299.99306 * 9 8 7 39 39 H 1.07998 * 120.41916 * 359.97438 * 11 10 9 40 40 H 1.08008 * 120.78688 * 180.22921 * 12 11 10 41 41 H 1.08002 * 120.42244 * 179.78279 * 13 12 11 42 42 H 1.07996 * 119.61757 * 180.25243 * 14 13 12 43 43 H 1.09001 * 109.46890 * 299.99745 * 18 16 2 44 44 H 1.08996 * 109.47394 * 59.99573 * 18 16 2 45 45 H 0.97004 * 120.00210 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 1 3.0417 0.9508 1.9563 6 8 1.2040 1.8813 2.1161 7 6 3.2171 3.0358 1.4425 8 7 3.5665 3.3995 2.8221 9 6 4.3027 4.6701 2.8611 10 6 4.6437 5.0094 4.2894 11 6 5.8785 4.6551 4.7996 12 6 6.1838 4.9759 6.1132 13 6 5.2276 5.6350 6.8710 14 6 4.0148 5.9573 6.2925 15 7 3.7604 5.6404 5.0378 16 6 2.1389 -1.1672 0.0005 17 8 3.3517 -1.1672 0.0001 18 6 1.3853 -2.4723 0.0005 19 16 2.5615 -3.8481 0.0005 20 6 1.4414 -5.2082 0.0013 21 1 0.3761 -5.0305 0.0020 22 6 1.9281 -6.5080 0.0020 23 7 3.2264 -6.7247 0.0017 24 14 0.7406 -7.9500 0.0021 25 1 -0.6548 -7.4421 0.0020 26 1 0.9668 -8.7776 -1.2099 27 1 0.9658 -8.7766 1.2151 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6084 2.0284 -0.5139 32 1 3.1499 1.1384 -0.5138 33 1 0.6268 2.5440 1.7125 34 1 2.5918 3.8159 1.0082 35 1 4.1277 2.9298 0.8528 36 1 4.0921 2.6628 3.2683 37 1 3.6847 5.4614 2.4369 38 1 5.2209 4.5760 2.2814 39 1 6.5975 4.1377 4.1817 40 1 7.1421 4.7150 6.5376 41 1 5.4300 5.8973 7.8990 42 1 3.2664 6.4743 6.8747 43 1 0.7584 -2.5297 0.8903 44 1 0.7590 -2.5302 -0.8896 45 1 3.5666 -7.6331 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278732199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:12 Heat of formation + Delta-G solvation = -72.615134 kcal Electronic energy + Delta-G solvation = -25741.381384 eV Core-core repulsion = 21884.075641 eV Total energy + Delta-G solvation = -3857.305743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.11980 -40.94885 -38.89839 -36.72723 -35.92693 -34.59528 -33.40762 -32.89212 -31.85198 -30.13083 -28.03275 -27.70070 -26.82112 -24.88605 -24.42341 -22.87165 -22.55650 -20.72543 -19.56546 -18.27443 -17.88089 -17.55205 -17.47363 -17.17896 -16.89322 -16.79872 -16.46025 -16.24665 -15.94823 -15.70516 -15.45223 -15.10552 -14.55557 -14.42112 -14.36429 -14.13702 -14.06323 -13.66977 -13.53935 -13.27440 -13.22338 -13.16434 -12.92279 -12.83806 -12.68143 -12.52057 -12.46042 -12.06058 -11.70698 -11.28095 -11.16664 -10.85557 -10.80447 -10.34874 -10.28077 -10.01919 -9.55464 -9.37757 -8.68200 -8.35816 -6.14018 0.13988 0.37394 1.25563 1.40784 1.45441 1.56235 1.57968 2.12637 2.26737 2.73481 2.98232 3.20510 3.27137 3.37747 3.58559 3.71204 3.82943 3.87003 4.03024 4.10299 4.14895 4.18046 4.21700 4.25037 4.36606 4.40571 4.48375 4.51543 4.53710 4.63418 4.72637 4.77011 4.81231 4.87928 4.97866 5.06520 5.21024 5.27510 5.40955 5.55757 5.77959 5.95504 6.18920 6.24014 6.26740 6.97362 7.05420 7.09463 7.14746 8.73735 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.001852 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.278895 B =15118.732337 C =15925.970724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.087 3.913 4 C 0.106 3.894 5 H 0.061 0.939 6 O -0.557 6.557 7 C 0.040 3.960 8 N -0.683 5.683 9 C 0.113 3.887 10 C 0.111 3.889 11 C -0.176 4.176 12 C -0.081 4.081 13 C -0.174 4.174 14 C 0.082 3.918 15 N -0.499 5.499 16 C 0.528 3.472 17 O -0.566 6.566 18 C -0.124 4.124 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.257 1.257 26 H -0.272 1.272 27 H -0.274 1.274 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.385 0.615 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.337 0.663 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 29.136 7.249 30.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.335 5.335 3 C -0.037 4.037 4 C 0.045 3.955 5 H 0.079 0.921 6 O -0.364 6.364 7 C -0.089 4.089 8 N -0.314 5.314 9 C -0.016 4.016 10 C -0.027 4.027 11 C -0.197 4.197 12 C -0.107 4.107 13 C -0.193 4.193 14 C -0.075 4.075 15 N -0.209 5.209 16 C 0.316 3.684 17 O -0.445 6.445 18 C -0.275 4.275 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.199 1.199 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.234 0.766 34 H 0.119 0.881 35 H 0.066 0.934 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.179 0.821 42 H 0.190 0.810 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.825 29.115 7.369 30.044 hybrid contribution -0.099 -1.241 -0.206 1.262 sum -0.924 27.873 7.163 28.794 Atomic orbital electron populations 1.22073 0.76914 1.04747 1.02915 1.47682 1.08474 1.04449 1.72889 1.22250 0.98921 0.85321 0.97164 1.22067 0.85672 0.95638 0.92084 0.92093 1.86660 1.28710 1.63873 1.57161 1.22566 0.99974 0.97147 0.89242 1.60308 1.48772 1.04653 1.17690 1.20783 0.97612 0.92860 0.90345 1.21314 0.90283 0.94596 0.96503 1.22264 0.98096 1.01738 0.97563 1.21986 1.00548 0.94697 0.93438 1.22513 0.94579 0.99637 1.02604 1.23226 0.96859 0.96556 0.90882 1.67463 1.34114 1.11973 1.07352 1.20128 0.87308 0.85615 0.75351 1.90660 1.15500 1.87538 1.50792 1.23368 1.02732 0.95306 1.06077 1.85514 1.12680 0.97264 1.97010 1.23228 0.94612 0.92689 1.58829 0.90022 1.26147 0.97656 1.01696 0.93714 1.70192 1.14086 1.22431 1.48042 0.84891 0.78147 0.76688 0.78130 1.18039 1.19772 1.19921 0.90954 0.91628 0.87940 0.85894 0.90572 0.76612 0.88127 0.93437 0.84560 0.89399 0.92114 0.83574 0.82334 0.82060 0.81009 0.87995 0.87546 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 9.98 127.77 1.28 2.66 16 2 N -0.60 -15.87 2.80 -846.76 -2.37 -18.24 16 3 C 0.09 1.75 5.10 86.38 0.44 2.19 16 4 C 0.11 2.21 3.42 30.60 0.10 2.32 16 5 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 6 O -0.56 -11.43 12.01 -148.98 -1.79 -13.22 16 7 C 0.04 0.63 5.32 86.30 0.46 1.09 16 8 N -0.68 -12.87 6.44 -517.92 -3.33 -16.20 16 9 C 0.11 1.83 6.00 85.56 0.51 2.35 16 10 C 0.11 2.08 6.29 42.55 0.27 2.35 16 11 C -0.18 -2.67 9.72 22.36 0.22 -2.45 16 12 C -0.08 -1.00 10.18 22.47 0.23 -0.77 16 13 C -0.17 -2.10 10.11 22.36 0.23 -1.87 16 14 C 0.08 1.30 11.18 84.67 0.95 2.25 16 15 N -0.50 -10.61 10.27 -183.88 -1.89 -12.50 16 16 C 0.53 20.36 7.69 87.66 0.67 21.03 16 17 O -0.57 -26.54 15.44 -3.05 -0.05 -26.59 16 18 C -0.12 -5.15 4.71 71.23 0.34 -4.82 16 19 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 20 C -0.55 -31.76 9.50 67.95 0.65 -31.11 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.72 5.49 84.86 0.47 1.19 16 23 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 24 Si 1.00 44.14 29.55 68.60 2.03 46.16 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.36 6.44 -2.39 -0.02 1.34 16 30 H 0.10 1.28 6.88 -2.39 -0.02 1.27 16 31 H 0.12 1.39 8.07 -2.38 -0.02 1.37 16 32 H 0.08 1.84 7.42 -2.39 -0.02 1.82 16 33 H 0.38 4.42 8.79 -74.05 -0.65 3.77 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.34 7.03 8.72 -89.69 -0.78 6.25 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 0.78 8.04 -2.39 -0.02 0.76 16 39 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.10 3.97 7.40 -2.39 -0.02 3.95 16 44 H 0.11 4.01 8.11 -2.40 -0.02 3.99 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -84.92 395.25 -1.90 -86.81 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.42 Total: 23.43 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 6.80 Total: -3.60 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -7.30 Total: -103.20 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.84 Total: -39.80 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -84.92 -1.90 -86.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278732199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.198 kcal (2) G-P(sol) polarization free energy of solvation -84.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds