Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99910 * 2 1 4 4 H 1.07999 * 120.00231 * 164.83378 * 3 2 1 5 5 C 1.38809 * 119.99901 * 344.54887 * 3 2 1 6 6 N 1.31613 * 120.00490 * 344.72814 * 5 3 2 7 7 Si 1.86800 * 119.99752 * 164.72672 * 5 3 2 8 8 H 1.48502 * 109.47146 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47395 * 120.00331 * 7 5 3 10 10 H 1.48503 * 109.47302 * 240.00241 * 7 5 3 11 11 C 1.46501 * 119.99632 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47132 * 269.99429 * 11 2 1 13 13 H 1.08995 * 109.47507 * 305.00807 * 12 11 2 14 14 O 1.42901 * 109.46711 * 65.00406 * 12 11 2 15 15 C 1.52997 * 109.47245 * 185.00273 * 12 11 2 16 16 N 1.46502 * 109.47232 * 180.02562 * 15 12 11 17 17 C 1.46493 * 120.00132 * 89.99851 * 16 15 12 18 18 C 1.34776 * 119.99485 * 269.99977 * 16 15 12 19 19 O 1.21688 * 120.00342 * 5.98422 * 18 16 15 20 20 C 1.46684 * 119.99780 * 185.98376 * 18 16 15 21 21 C 1.35663 * 126.13288 * 8.15135 * 20 18 16 22 22 N 1.30942 * 114.19554 * 179.78746 * 21 20 18 23 23 C 1.29432 * 117.35829 * 0.52446 * 22 21 20 24 24 C 1.50702 * 124.80042 * 179.72707 * 23 22 21 25 25 C 1.52995 * 117.50138 * 8.60532 * 24 23 22 26 26 C 1.52996 * 117.50287 * 299.98025 * 24 23 22 27 27 S 1.70948 * 110.39482 * 359.70916 * 23 22 21 28 28 H 1.08993 * 109.47318 * 84.75084 * 1 2 3 29 29 H 1.09008 * 109.47363 * 204.74902 * 1 2 3 30 30 H 1.08998 * 109.47277 * 324.74594 * 1 2 3 31 31 H 0.97001 * 120.00315 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.47474 * 30.00169 * 11 2 1 33 33 H 1.09005 * 109.46648 * 149.99807 * 11 2 1 34 34 H 0.96699 * 114.00326 * 60.00216 * 14 12 11 35 35 H 1.09004 * 109.47292 * 300.00044 * 15 12 11 36 36 H 1.08998 * 109.46904 * 60.00279 * 15 12 11 37 37 H 1.09004 * 109.47334 * 95.30437 * 17 16 15 38 38 H 1.09007 * 109.47408 * 215.29860 * 17 16 15 39 39 H 1.08993 * 109.47482 * 335.30024 * 17 16 15 40 40 H 1.08001 * 122.90155 * 359.96539 * 21 20 18 41 41 H 1.09007 * 115.54728 * 154.30219 * 24 23 22 42 42 H 1.09009 * 117.49638 * 359.97438 * 25 24 23 43 43 H 1.08997 * 117.50417 * 145.01794 * 25 24 23 44 44 H 1.09004 * 117.50067 * 214.98300 * 26 24 23 45 45 H 1.09001 * 117.49658 * 359.97181 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2015 1.2022 0.2447 5 6 1.4932 2.3663 -0.3203 6 7 0.3163 2.3262 -0.9079 7 14 2.2803 4.0117 0.0829 8 1 3.5943 3.7849 0.7366 9 1 2.4778 4.7860 -1.1688 10 1 1.3949 4.7723 1.0009 11 6 2.1975 -1.2688 0.0006 12 6 2.4526 -1.7098 1.4433 13 1 2.9642 -0.9122 1.9819 14 8 1.2061 -1.9926 2.0823 15 6 3.3238 -2.9674 1.4457 16 7 3.5676 -3.3900 2.8271 17 6 2.6470 -4.3235 3.4808 18 6 4.6387 -2.9199 3.4964 19 8 5.3419 -2.0630 2.9945 20 6 4.9569 -3.4413 4.8301 21 6 4.3594 -4.4952 5.4404 22 7 4.8309 -4.7630 6.6323 23 6 5.7789 -4.0048 7.0812 24 6 6.4375 -4.1573 8.4280 25 6 6.0951 -5.4050 9.2446 26 6 5.5476 -4.0403 9.6670 27 16 6.1785 -2.8060 5.9298 28 1 -0.3633 0.0940 -1.0233 29 1 -0.3634 -0.9333 0.4302 30 1 -0.3634 0.8392 0.5932 31 1 -0.1426 3.1511 -1.1314 32 1 1.6084 -2.0287 -0.5129 33 1 3.1499 -1.1387 -0.5134 34 1 0.6955 -2.6942 1.6555 35 1 2.8120 -3.7650 0.9070 36 1 4.2745 -2.7517 0.9582 37 1 3.0293 -5.3395 3.3824 38 1 2.5604 -4.0686 4.5371 39 1 1.6666 -4.2569 3.0094 40 1 3.5655 -5.0660 4.9817 41 1 7.4545 -3.7716 8.5004 42 1 5.3931 -6.1154 8.8078 43 1 6.8867 -5.8404 9.8544 44 1 5.9790 -3.5777 10.5547 45 1 4.4857 -3.8524 9.5080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278882604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = 42.112451 kcal Electronic energy + Delta-G solvation = -26995.553024 eV Core-core repulsion = 23143.222242 eV Total energy + Delta-G solvation = -3852.330782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69739 -39.52259 -37.51219 -37.19059 -35.45672 -34.58001 -31.68644 -31.04425 -29.31008 -27.56703 -26.78096 -25.79920 -25.21967 -22.98065 -22.77523 -22.34153 -20.86350 -20.58211 -19.37436 -18.28719 -16.99372 -16.73434 -16.35900 -16.16860 -15.68787 -15.32174 -15.14254 -14.78028 -14.75504 -14.55116 -14.36247 -13.74527 -13.56813 -13.17425 -13.10630 -12.82415 -12.70313 -12.34465 -11.93740 -11.85377 -11.54927 -11.35377 -11.26527 -11.09048 -11.07389 -10.86179 -10.68584 -10.55576 -10.37018 -10.28570 -9.99716 -9.83096 -9.76870 -9.70132 -9.66874 -9.04522 -8.66466 -8.36370 -6.71745 -5.65666 -3.05068 0.00379 0.87801 1.44210 2.18754 2.93251 3.06809 3.40279 3.43820 3.50985 3.54658 3.69230 4.31206 4.37314 4.39720 4.53242 4.55549 4.78531 4.88096 4.91444 4.95462 5.04725 5.21419 5.22608 5.29256 5.34962 5.48857 5.53234 5.56389 5.71967 5.77391 5.80409 5.87344 5.93082 6.03627 6.41977 6.59266 6.78092 6.88036 7.20472 7.33500 7.55749 7.76615 7.91148 8.03203 8.15880 8.43410 9.30704 9.94538 10.39684 11.39350 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.002496 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.619492 B =11217.250475 C =12066.579394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.595 5.595 3 C -0.249 4.249 4 H 0.070 0.930 5 C -0.003 4.003 6 N -0.910 5.910 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.291 1.291 10 H -0.290 1.290 11 C 0.128 3.872 12 C 0.068 3.932 13 H 0.101 0.899 14 O -0.549 6.549 15 C 0.086 3.914 16 N -0.591 5.591 17 C 0.064 3.936 18 C 0.589 3.411 19 O -0.529 6.529 20 C -0.292 4.292 21 C 0.067 3.933 22 N -0.481 5.481 23 C 0.066 3.934 24 C -0.103 4.103 25 C -0.148 4.148 26 C -0.154 4.154 27 S 0.236 5.764 28 H 0.021 0.979 29 H -0.001 1.001 30 H 0.048 0.952 31 H 0.250 0.750 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.356 0.644 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.204 0.796 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.174 -19.996 17.544 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.317 5.317 3 C -0.379 4.379 4 H 0.088 0.912 5 C -0.200 4.200 6 N -0.557 5.557 7 Si 0.733 3.267 8 H -0.203 1.203 9 H -0.218 1.218 10 H -0.217 1.217 11 C -0.001 4.001 12 C 0.005 3.995 13 H 0.119 0.881 14 O -0.352 6.352 15 C -0.037 4.037 16 N -0.324 5.324 17 C -0.078 4.078 18 C 0.376 3.624 19 O -0.407 6.407 20 C -0.416 4.416 21 C -0.091 4.091 22 N -0.195 5.195 23 C -0.208 4.208 24 C -0.124 4.124 25 C -0.187 4.187 26 C -0.193 4.193 27 S 0.497 5.503 28 H 0.039 0.961 29 H 0.017 0.983 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.201 0.799 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.220 0.780 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 10.217 -18.451 17.879 27.650 hybrid contribution -0.574 0.013 -0.663 0.877 sum 9.642 -18.438 17.217 27.006 Atomic orbital electron populations 1.20773 0.82020 0.95842 0.98683 1.43807 1.02141 1.00200 1.85568 1.19292 0.94339 0.84482 1.39754 0.91172 1.24854 0.97398 0.98087 0.99691 1.70140 1.15817 1.25867 1.43845 0.86203 0.78630 0.84251 0.77652 1.20308 1.21849 1.21658 1.21268 0.96870 0.89440 0.92571 1.23364 0.83371 0.94621 0.98144 0.88103 1.86673 1.32807 1.59343 1.56387 1.22434 1.02290 0.98333 0.80634 1.47425 1.24507 1.46007 1.14421 1.22388 0.94403 0.91840 0.99199 1.16741 0.81045 0.81629 0.83010 1.90883 1.50581 1.30621 1.68615 1.25773 1.07373 1.05847 1.02636 1.23379 1.00261 0.95705 0.89713 1.66128 1.11400 1.28291 1.13668 1.26538 0.97503 0.96171 1.00582 1.20558 0.99409 1.06857 0.85602 1.23019 1.03580 0.90946 1.01111 1.23070 0.99788 1.00496 0.95918 1.84118 1.32168 1.28743 1.05315 0.96105 0.98281 0.93376 0.93946 0.94231 0.92650 0.79877 0.90185 0.88977 0.92244 0.90084 0.89687 0.78020 0.85315 0.87273 0.87974 0.87678 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.35 8.75 59.85 0.52 4.87 16 2 N -0.60 -15.30 2.90 -181.12 -0.52 -15.83 16 3 C -0.25 -7.14 9.72 -15.06 -0.15 -7.29 16 4 H 0.07 2.00 7.88 -52.49 -0.41 1.59 16 5 C 0.00 -0.09 5.09 -17.43 -0.09 -0.18 16 6 N -0.91 -27.41 10.41 55.49 0.58 -26.83 16 7 Si 0.90 22.94 29.58 -169.99 -5.03 17.91 16 8 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 11 C 0.13 2.55 5.30 -4.04 -0.02 2.53 16 12 C 0.07 1.20 3.48 -26.73 -0.09 1.11 16 13 H 0.10 2.24 8.14 -51.93 -0.42 1.82 16 14 O -0.55 -9.26 11.07 -35.23 -0.39 -9.65 16 15 C 0.09 1.17 5.03 -4.04 -0.02 1.15 16 16 N -0.59 -7.69 2.80 -183.13 -0.51 -8.20 16 17 C 0.06 0.57 8.33 59.84 0.50 1.07 16 18 C 0.59 9.12 7.63 -12.85 -0.10 9.02 16 19 O -0.53 -10.23 16.62 5.20 0.09 -10.14 16 20 C -0.29 -3.78 6.32 -37.09 -0.23 -4.02 16 21 C 0.07 0.72 9.43 -18.85 -0.18 0.55 16 22 N -0.48 -5.31 9.98 -11.50 -0.11 -5.42 16 23 C 0.07 0.66 6.96 -13.29 -0.09 0.57 16 24 C -0.10 -0.74 6.28 -91.78 -0.58 -1.32 16 25 C -0.15 -0.91 10.12 -26.73 -0.27 -1.18 16 26 C -0.15 -0.95 10.23 -26.73 -0.27 -1.22 16 27 S 0.24 2.70 23.02 -107.50 -2.47 0.22 16 28 H 0.02 0.56 7.53 -51.93 -0.39 0.17 16 29 H 0.00 -0.03 7.22 -51.92 -0.38 -0.40 16 30 H 0.05 1.35 6.88 -51.93 -0.36 0.99 16 31 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.06 1.11 8.04 -51.93 -0.42 0.70 16 34 H 0.36 4.50 8.79 45.56 0.40 4.90 16 35 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.09 1.36 7.51 -51.93 -0.39 0.97 16 37 H 0.06 0.38 7.31 -51.93 -0.38 0.00 16 38 H 0.08 0.72 5.36 -51.93 -0.28 0.44 16 39 H 0.08 0.67 7.00 -51.93 -0.36 0.31 16 40 H 0.20 1.66 3.98 -52.49 -0.21 1.45 16 41 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 0.80 7.84 -51.92 -0.41 0.39 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -36.12 380.87 -9.38 -45.50 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.67 Total: 1.04 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.07 Total: 5.66 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.57 Total: -56.28 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.30 Total: -19.79 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.03 Total: 17.91 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.47 Total: 0.22 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.12 -9.38 -45.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278882604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.609 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds