Wall clock time and date at job start Sat Apr 11 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99910 * 2 1 4 4 H 1.07999 * 120.00231 * 164.83378 * 3 2 1 5 5 C 1.38809 * 119.99901 * 344.54887 * 3 2 1 6 6 N 1.31613 * 120.00490 * 344.72814 * 5 3 2 7 7 Si 1.86800 * 119.99752 * 164.72672 * 5 3 2 8 8 H 1.48502 * 109.47146 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47395 * 120.00331 * 7 5 3 10 10 H 1.48503 * 109.47302 * 240.00241 * 7 5 3 11 11 C 1.46501 * 119.99632 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47132 * 269.99429 * 11 2 1 13 13 H 1.08995 * 109.47507 * 305.00807 * 12 11 2 14 14 O 1.42901 * 109.46711 * 65.00406 * 12 11 2 15 15 C 1.52997 * 109.47245 * 185.00273 * 12 11 2 16 16 N 1.46502 * 109.47232 * 180.02562 * 15 12 11 17 17 C 1.46493 * 120.00132 * 89.99851 * 16 15 12 18 18 C 1.34776 * 119.99485 * 269.99977 * 16 15 12 19 19 O 1.21688 * 120.00342 * 5.98422 * 18 16 15 20 20 C 1.46684 * 119.99780 * 185.98376 * 18 16 15 21 21 C 1.35663 * 126.13288 * 8.15135 * 20 18 16 22 22 N 1.30942 * 114.19554 * 179.78746 * 21 20 18 23 23 C 1.29432 * 117.35829 * 0.52446 * 22 21 20 24 24 C 1.50702 * 124.80042 * 179.72707 * 23 22 21 25 25 C 1.52995 * 117.50138 * 8.60532 * 24 23 22 26 26 C 1.52996 * 117.50287 * 299.98025 * 24 23 22 27 27 S 1.70948 * 110.39482 * 359.70916 * 23 22 21 28 28 H 1.08993 * 109.47318 * 84.75084 * 1 2 3 29 29 H 1.09008 * 109.47363 * 204.74902 * 1 2 3 30 30 H 1.08998 * 109.47277 * 324.74594 * 1 2 3 31 31 H 0.97001 * 120.00315 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.47474 * 30.00169 * 11 2 1 33 33 H 1.09005 * 109.46648 * 149.99807 * 11 2 1 34 34 H 0.96699 * 114.00326 * 60.00216 * 14 12 11 35 35 H 1.09004 * 109.47292 * 300.00044 * 15 12 11 36 36 H 1.08998 * 109.46904 * 60.00279 * 15 12 11 37 37 H 1.09004 * 109.47334 * 95.30437 * 17 16 15 38 38 H 1.09007 * 109.47408 * 215.29860 * 17 16 15 39 39 H 1.08993 * 109.47482 * 335.30024 * 17 16 15 40 40 H 1.08001 * 122.90155 * 359.96539 * 21 20 18 41 41 H 1.09007 * 115.54728 * 154.30219 * 24 23 22 42 42 H 1.09009 * 117.49638 * 359.97438 * 25 24 23 43 43 H 1.08997 * 117.50417 * 145.01794 * 25 24 23 44 44 H 1.09004 * 117.50067 * 214.98300 * 26 24 23 45 45 H 1.09001 * 117.49658 * 359.97181 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2015 1.2022 0.2447 5 6 1.4932 2.3663 -0.3203 6 7 0.3163 2.3262 -0.9079 7 14 2.2803 4.0117 0.0829 8 1 3.5943 3.7849 0.7366 9 1 2.4778 4.7860 -1.1688 10 1 1.3949 4.7723 1.0009 11 6 2.1975 -1.2688 0.0006 12 6 2.4526 -1.7098 1.4433 13 1 2.9642 -0.9122 1.9819 14 8 1.2061 -1.9926 2.0823 15 6 3.3238 -2.9674 1.4457 16 7 3.5676 -3.3900 2.8271 17 6 2.6470 -4.3235 3.4808 18 6 4.6387 -2.9199 3.4964 19 8 5.3419 -2.0630 2.9945 20 6 4.9569 -3.4413 4.8301 21 6 4.3594 -4.4952 5.4404 22 7 4.8309 -4.7630 6.6323 23 6 5.7789 -4.0048 7.0812 24 6 6.4375 -4.1573 8.4280 25 6 6.0951 -5.4050 9.2446 26 6 5.5476 -4.0403 9.6670 27 16 6.1785 -2.8060 5.9298 28 1 -0.3633 0.0940 -1.0233 29 1 -0.3634 -0.9333 0.4302 30 1 -0.3634 0.8392 0.5932 31 1 -0.1426 3.1511 -1.1314 32 1 1.6084 -2.0287 -0.5129 33 1 3.1499 -1.1387 -0.5134 34 1 0.6955 -2.6942 1.6555 35 1 2.8120 -3.7650 0.9070 36 1 4.2745 -2.7517 0.9582 37 1 3.0293 -5.3395 3.3824 38 1 2.5604 -4.0686 4.5371 39 1 1.6666 -4.2569 3.0094 40 1 3.5655 -5.0660 4.9817 41 1 7.4545 -3.7716 8.5004 42 1 5.3931 -6.1154 8.8078 43 1 6.8867 -5.8404 9.8544 44 1 5.9790 -3.5777 10.5547 45 1 4.4857 -3.8524 9.5080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278882604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:36 Heat of formation + Delta-G solvation = 15.838318 kcal Electronic energy + Delta-G solvation = -26996.692356 eV Core-core repulsion = 23143.222242 eV Total energy + Delta-G solvation = -3853.470114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65008 -40.50579 -38.92548 -37.84540 -36.95472 -36.08756 -33.37168 -32.40430 -30.62577 -28.47899 -28.01583 -27.73053 -26.50519 -23.99052 -23.62977 -23.25710 -22.34404 -21.87944 -20.23853 -19.17162 -18.84199 -17.78897 -17.66547 -17.13923 -16.77705 -16.62146 -16.43808 -16.30058 -15.67682 -15.64237 -15.45353 -15.14199 -14.90756 -14.72782 -14.42577 -14.05550 -13.73677 -13.35314 -13.16356 -13.04293 -12.85041 -12.71154 -12.55057 -12.38165 -12.19664 -12.17617 -12.06737 -11.97779 -11.86566 -11.86023 -11.70270 -11.40183 -11.23826 -10.68190 -10.62508 -10.57641 -9.88958 -9.68884 -8.76773 -7.85379 -5.26091 -0.87286 0.01673 0.59574 1.29315 1.39446 1.41369 1.52142 1.91697 2.04536 2.47489 2.83178 3.01736 3.25017 3.45201 3.54535 3.70108 3.70320 3.86241 4.02281 4.04487 4.06916 4.14260 4.19750 4.27956 4.48291 4.50011 4.56433 4.74133 4.79845 4.83752 4.88101 4.91934 4.94705 4.98338 5.13843 5.22203 5.29239 5.41524 5.46568 5.56239 5.75547 6.17357 6.28329 6.48054 6.93601 7.02876 7.13726 7.88548 8.26184 9.17130 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.002496 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.619492 B =11217.250475 C =12066.579394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.615 5.615 3 C -0.257 4.257 4 H 0.061 0.939 5 C -0.057 4.057 6 N -0.937 5.937 7 Si 0.961 3.039 8 H -0.275 1.275 9 H -0.286 1.286 10 H -0.290 1.290 11 C 0.124 3.876 12 C 0.090 3.910 13 H 0.045 0.955 14 O -0.560 6.560 15 C 0.096 3.904 16 N -0.588 5.588 17 C 0.055 3.945 18 C 0.581 3.419 19 O -0.585 6.585 20 C -0.326 4.326 21 C 0.089 3.911 22 N -0.495 5.495 23 C 0.086 3.914 24 C -0.121 4.121 25 C -0.138 4.138 26 C -0.147 4.147 27 S 0.209 5.791 28 H -0.002 1.002 29 H 0.039 0.961 30 H 0.011 0.989 31 H 0.248 0.752 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.380 0.620 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.230 0.770 41 H 0.149 0.851 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.142 -22.766 19.231 31.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.337 5.337 3 C -0.388 4.388 4 H 0.079 0.921 5 C -0.252 4.252 6 N -0.585 5.585 7 Si 0.790 3.210 8 H -0.200 1.200 9 H -0.213 1.213 10 H -0.217 1.217 11 C -0.004 4.004 12 C 0.027 3.973 13 H 0.064 0.936 14 O -0.367 6.367 15 C -0.027 4.027 16 N -0.318 5.318 17 C -0.086 4.086 18 C 0.370 3.630 19 O -0.467 6.467 20 C -0.450 4.450 21 C -0.069 4.069 22 N -0.210 5.210 23 C -0.188 4.188 24 C -0.143 4.143 25 C -0.177 4.177 26 C -0.186 4.186 27 S 0.470 5.530 28 H 0.016 0.984 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.228 0.772 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.246 0.754 41 H 0.166 0.834 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.170 -21.292 19.575 30.659 hybrid contribution -0.587 0.731 -1.071 1.423 sum 9.583 -20.561 18.504 29.274 Atomic orbital electron populations 1.20485 0.82053 0.96269 0.96853 1.44037 1.02489 1.01340 1.85882 1.19500 0.94242 0.86198 1.38822 0.92093 1.25565 0.98239 1.01071 1.00286 1.70275 1.16931 1.26251 1.45035 0.85281 0.77777 0.80546 0.77367 1.20032 1.21313 1.21663 1.21522 0.96517 0.87995 0.94329 1.22740 0.84217 0.95169 0.95178 0.93637 1.86628 1.32721 1.60672 1.56666 1.22259 1.01069 0.97764 0.81655 1.47520 1.24320 1.45865 1.14145 1.22707 0.94450 0.92448 0.98985 1.17154 0.81130 0.81016 0.83745 1.90842 1.52630 1.33239 1.70032 1.25570 1.09396 1.07690 1.02326 1.23815 0.99526 0.94416 0.89179 1.66259 1.12149 1.28735 1.13835 1.27115 0.96281 0.94436 1.00931 1.20877 1.00469 1.08531 0.84419 1.23101 1.03779 0.90410 1.00429 1.23155 0.98957 1.00670 0.95813 1.84182 1.32739 1.29956 1.06124 0.98418 0.94237 0.97050 0.94307 0.90638 0.93401 0.77183 0.85413 0.90569 0.88821 0.90142 0.87994 0.75435 0.83355 0.88496 0.85580 0.85386 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.55 8.75 127.77 1.12 10.67 16 2 N -0.61 -31.83 2.90 -726.93 -2.11 -33.93 16 3 C -0.26 -15.11 9.72 84.03 0.82 -14.29 16 4 H 0.06 3.61 7.88 -2.91 -0.02 3.58 16 5 C -0.06 -3.41 5.09 84.86 0.43 -2.97 16 6 N -0.94 -57.70 10.41 21.65 0.23 -57.47 16 7 Si 0.96 48.35 29.58 68.60 2.03 50.38 16 8 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 9 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 10 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 11 C 0.12 4.82 5.30 86.38 0.46 5.28 16 12 C 0.09 3.12 3.48 30.59 0.11 3.23 16 13 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 14 O -0.56 -17.68 11.07 -148.98 -1.65 -19.33 16 15 C 0.10 2.45 5.03 86.38 0.43 2.88 16 16 N -0.59 -14.44 2.80 -851.52 -2.38 -16.82 16 17 C 0.05 0.78 8.33 127.77 1.06 1.85 16 18 C 0.58 18.25 7.63 86.45 0.66 18.91 16 19 O -0.59 -23.90 16.62 -4.31 -0.07 -23.98 16 20 C -0.33 -8.41 6.32 23.88 0.15 -8.25 16 21 C 0.09 1.77 9.43 84.23 0.79 2.57 16 22 N -0.50 -10.13 9.98 -190.30 -1.90 -12.03 16 23 C 0.09 1.64 6.96 88.46 0.62 2.25 16 24 C -0.12 -1.51 6.28 -11.54 -0.07 -1.58 16 25 C -0.14 -1.33 10.12 30.59 0.31 -1.02 16 26 C -0.15 -1.46 10.23 30.59 0.31 -1.14 16 27 S 0.21 4.86 23.02 -56.49 -1.30 3.56 16 28 H 0.00 -0.14 7.53 -2.39 -0.02 -0.15 16 29 H 0.04 1.64 7.22 -2.38 -0.02 1.62 16 30 H 0.01 0.62 6.88 -2.39 -0.02 0.60 16 31 H 0.25 14.74 8.31 -92.71 -0.77 13.96 16 32 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 33 H 0.05 1.93 8.04 -2.38 -0.02 1.91 16 34 H 0.38 8.01 8.79 -74.06 -0.65 7.36 16 35 H 0.13 2.07 8.07 -2.38 -0.02 2.05 16 36 H 0.08 2.23 7.51 -2.39 -0.02 2.22 16 37 H 0.09 0.76 7.31 -2.39 -0.02 0.74 16 38 H 0.08 1.20 5.36 -2.38 -0.01 1.18 16 39 H 0.10 1.15 7.00 -2.39 -0.02 1.14 16 40 H 0.23 3.03 3.98 -2.91 -0.01 3.02 16 41 H 0.15 1.24 8.14 -2.38 -0.02 1.22 16 42 H 0.10 1.21 7.84 -2.38 -0.02 1.19 16 43 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -83.14 380.87 0.42 -82.71 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.37 Total: 8.55 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 7.20 Total: 18.37 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -6.16 Total: -120.25 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -1.72 Total: -43.30 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.30 Total: 3.56 kcal Total: -83.14 0.42 -82.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278882604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.553 kcal (2) G-P(sol) polarization free energy of solvation -83.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds