Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99963 * 2 1 4 4 C 1.50703 * 109.46749 * 180.02562 * 3 2 1 5 5 N 1.29428 * 124.80666 * 90.02454 * 4 3 2 6 6 C 1.30940 * 117.36095 * 179.97438 * 5 4 3 7 7 C 1.35658 * 114.19469 * 0.02562 * 6 5 4 8 8 C 1.46691 * 126.13238 * 179.97438 * 7 6 5 9 9 O 1.21686 * 119.99487 * 353.20739 * 8 7 6 10 10 N 1.34766 * 119.99998 * 173.20037 * 8 7 6 11 11 C 1.47430 * 125.65203 * 3.62876 * 10 8 7 12 12 C 1.54912 * 104.83201 * 204.14871 * 11 10 8 13 13 C 1.55153 * 101.58062 * 322.98593 * 12 11 10 14 14 C 1.47026 * 125.64821 * 183.64445 * 10 8 7 15 15 H 1.09001 * 110.00532 * 59.43567 * 14 10 8 16 16 C 1.52995 * 109.88372 * 298.34134 * 14 10 8 17 17 N 1.46497 * 109.47021 * 175.84727 * 16 14 10 18 18 C 1.46501 * 120.00183 * 271.90925 * 17 16 14 19 19 C 1.36938 * 120.00086 * 91.90837 * 17 16 14 20 20 H 1.08000 * 120.00056 * 1.97458 * 19 17 16 21 21 C 1.38810 * 120.00151 * 181.96927 * 19 17 16 22 22 N 1.31620 * 120.00337 * 349.26433 * 21 19 17 23 23 Si 1.86800 * 120.00129 * 169.26430 * 21 19 17 24 24 H 1.48503 * 109.47175 * 270.00593 * 23 21 19 25 25 H 1.48501 * 109.47185 * 29.99721 * 23 21 19 26 26 H 1.48491 * 109.47416 * 150.00144 * 23 21 19 27 27 S 1.70955 * 124.79886 * 270.33628 * 4 3 2 28 28 H 1.09003 * 109.46905 * 300.00603 * 1 2 3 29 29 H 1.09009 * 109.46697 * 60.00040 * 1 2 3 30 30 H 1.08995 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47192 * 59.99578 * 3 2 1 32 32 H 1.09005 * 109.47097 * 299.99529 * 3 2 1 33 33 H 1.08004 * 122.90207 * 179.97438 * 6 5 4 34 34 H 1.08995 * 110.36870 * 85.30503 * 11 10 8 35 35 H 1.09004 * 110.36310 * 322.98286 * 11 10 8 36 36 H 1.09003 * 111.00047 * 204.91178 * 12 11 10 37 37 H 1.08996 * 111.00400 * 81.06052 * 12 11 10 38 38 H 1.09004 * 110.72169 * 277.14226 * 13 12 11 39 39 H 1.08997 * 110.87487 * 153.93757 * 13 12 11 40 40 H 1.08998 * 109.47107 * 55.84681 * 16 14 10 41 41 H 1.08997 * 109.47282 * 295.84595 * 16 14 10 42 42 H 1.09002 * 109.47321 * 239.12941 * 18 17 16 43 43 H 1.08999 * 109.46836 * 359.12581 * 18 17 16 44 44 H 1.08997 * 109.47121 * 119.12792 * 18 17 16 45 45 H 0.96998 * 120.00206 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2487 1.1287 -1.0637 6 6 5.5431 1.0265 -0.8945 7 6 5.9333 0.9947 0.4043 8 6 7.3129 0.8851 0.8906 9 8 8.2211 0.6885 0.1049 10 7 7.5745 1.0021 2.2074 11 6 6.5681 1.1651 3.2723 12 6 7.3271 1.8552 4.4331 13 6 8.7205 1.1792 4.3396 14 6 8.9110 0.9887 2.8200 15 1 9.5140 1.8025 2.4172 16 6 9.5959 -0.3515 2.5454 17 7 10.9621 -0.3189 3.0733 18 6 12.0583 0.1791 2.2386 19 6 11.2146 -0.7539 4.3469 20 1 10.4121 -1.1507 4.9511 21 6 12.5019 -0.6850 4.8615 22 7 13.5138 -0.4041 4.0680 23 14 12.7984 -0.9908 6.6803 24 1 12.7005 0.2929 7.4205 25 1 11.7777 -1.9382 7.1958 26 1 14.1524 -1.5700 6.8707 27 16 4.4851 1.1008 1.4027 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8464 -0.8901 33 1 6.2398 0.9714 -1.7180 34 1 6.1914 0.1930 3.5903 35 1 5.7489 1.7957 2.9268 36 1 6.8529 1.6422 5.3912 37 1 7.4022 2.9298 4.2665 38 1 8.7174 0.2169 4.8514 39 1 9.4953 1.8286 4.7469 40 1 9.6259 -0.5308 1.4707 41 1 9.0375 -1.1513 3.0317 42 1 12.8078 -0.6032 2.1185 43 1 11.6699 0.4633 1.2606 44 1 12.5126 1.0475 2.7156 45 1 14.4133 -0.3556 4.4277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281967571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = 13.243369 kcal Electronic energy + Delta-G solvation = -27325.287294 eV Core-core repulsion = 23471.704655 eV Total energy + Delta-G solvation = -3853.582639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.36425 -39.67184 -38.19539 -37.24558 -35.35134 -32.26675 -31.43191 -31.26375 -29.26448 -28.46529 -26.60894 -25.89196 -25.31512 -24.40952 -23.14523 -21.67250 -21.14467 -19.75692 -19.04198 -18.30900 -17.08009 -16.94969 -16.75535 -16.39314 -15.95030 -15.77582 -15.15349 -14.81619 -14.63836 -14.49358 -13.91765 -13.69154 -13.36807 -13.23301 -13.05519 -12.94234 -12.78272 -12.57873 -12.15766 -11.92489 -11.84950 -11.77884 -11.26270 -11.13894 -10.90552 -10.74592 -10.49028 -10.36904 -10.30961 -10.11733 -10.01681 -9.81073 -9.73632 -9.66780 -9.55298 -9.23345 -8.63390 -8.40163 -6.86233 -5.60319 -3.02693 -0.01021 0.92827 1.35883 2.24346 2.97831 3.15985 3.33062 3.39102 3.44351 3.46951 3.95294 4.42759 4.46294 4.51972 4.61172 4.81257 4.86427 4.90483 4.96232 4.96742 5.05829 5.16639 5.22775 5.38879 5.39881 5.58098 5.65166 5.75885 5.87754 5.90382 5.99102 6.25868 6.30086 6.52429 6.53605 6.63067 6.77117 6.92464 6.96807 7.37769 7.60115 7.70055 7.74588 7.99837 8.18840 8.42202 9.29933 9.93892 10.38373 11.38164 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023566 B = 0.002578 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.880026 B =10859.871781 C =11501.316071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.019 3.981 5 N -0.461 5.461 6 C 0.111 3.889 7 C -0.273 4.273 8 C 0.602 3.398 9 O -0.516 6.516 10 N -0.605 5.605 11 C 0.089 3.911 12 C -0.132 4.132 13 C -0.108 4.108 14 C 0.116 3.884 15 H 0.073 0.927 16 C 0.147 3.853 17 N -0.605 5.605 18 C 0.167 3.833 19 C -0.242 4.242 20 H 0.074 0.926 21 C -0.006 4.006 22 N -0.914 5.914 23 Si 0.904 3.096 24 H -0.289 1.289 25 H -0.282 1.282 26 H -0.292 1.292 27 S 0.210 5.790 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.190 0.810 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.054 0.946 43 H -0.005 1.005 44 H 0.029 0.971 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.962 6.480 -3.539 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.060 3.940 4 C -0.255 4.255 5 N -0.176 5.176 6 C -0.047 4.047 7 C -0.398 4.398 8 C 0.388 3.612 9 O -0.394 6.394 10 N -0.338 5.338 11 C -0.035 4.035 12 C -0.171 4.171 13 C -0.146 4.146 14 C 0.012 3.988 15 H 0.091 0.909 16 C 0.018 3.982 17 N -0.328 5.328 18 C 0.023 3.977 19 C -0.371 4.371 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.734 3.266 24 H -0.216 1.216 25 H -0.207 1.207 26 H -0.219 1.219 27 S 0.467 5.533 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.207 0.793 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.014 0.986 44 H 0.048 0.952 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.699 6.210 -3.425 26.660 hybrid contribution 0.526 0.123 0.280 0.609 sum -25.173 6.333 -3.145 26.147 Atomic orbital electron populations 1.22820 0.79919 1.03416 1.00343 1.87979 1.20358 1.26201 1.95518 1.20793 0.84645 0.86125 1.02486 1.27245 1.00788 1.03780 0.93707 1.66195 1.04853 1.14849 1.31722 1.22158 0.90635 0.96264 0.95616 1.26009 0.98178 1.17675 0.97892 1.16293 0.85648 0.77937 0.81306 1.90875 1.44975 1.49144 1.54391 1.48603 1.09546 1.71083 1.04618 1.22562 0.91318 1.00770 0.88889 1.22814 0.97104 1.00025 0.97116 1.22579 0.95187 1.02100 0.94687 1.22821 0.80778 1.02541 0.92692 0.90934 1.21052 0.86358 0.92661 0.98090 1.44006 1.01045 1.73997 1.13731 1.21061 0.89111 0.98913 0.88648 1.19282 0.93759 1.34883 0.89204 0.90801 1.24843 0.95744 1.01730 0.97903 1.70242 0.98517 1.55039 1.32346 0.86246 0.77242 0.77623 0.85451 1.21640 1.20736 1.21877 1.84165 0.95779 1.64068 1.09283 0.93629 0.93578 0.89048 0.90768 0.90064 0.79291 0.90502 0.91228 0.89806 0.90832 0.89867 0.89640 0.92789 0.93777 0.92737 0.98633 0.95243 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.54 10.69 -35.23 -0.38 -3.92 16 3 C 0.14 1.10 6.51 36.01 0.23 1.33 16 4 C 0.02 0.20 7.02 -13.29 -0.09 0.11 16 5 N -0.46 -5.97 10.51 -11.50 -0.12 -6.09 16 6 C 0.11 1.48 11.10 -18.85 -0.21 1.27 16 7 C -0.27 -3.74 6.38 -37.09 -0.24 -3.98 16 8 C 0.60 10.06 7.63 -12.85 -0.10 9.96 16 9 O -0.52 -10.46 15.72 5.20 0.08 -10.38 16 10 N -0.60 -9.44 3.06 -164.54 -0.50 -9.95 16 11 C 0.09 1.04 5.64 -2.52 -0.01 1.02 16 12 C -0.13 -1.50 7.09 -24.58 -0.17 -1.68 16 13 C -0.11 -1.71 5.62 -24.90 -0.14 -1.85 16 14 C 0.12 2.12 3.14 -66.95 -0.21 1.91 16 15 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 16 C 0.15 3.19 5.11 -4.05 -0.02 3.17 16 17 N -0.60 -15.35 2.85 -181.13 -0.52 -15.87 16 18 C 0.17 4.36 9.00 59.85 0.54 4.90 16 19 C -0.24 -6.45 8.73 -15.06 -0.13 -6.58 16 20 H 0.07 1.88 7.18 -52.49 -0.38 1.51 16 21 C -0.01 -0.16 5.41 -17.43 -0.09 -0.26 16 22 N -0.91 -26.62 9.54 55.49 0.53 -26.09 16 23 Si 0.90 21.58 29.57 -169.99 -5.03 16.55 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 S 0.21 2.13 18.75 -107.50 -2.02 0.11 16 28 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.19 8.14 -51.92 -0.42 -0.23 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.19 2.37 8.06 -52.48 -0.42 1.95 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.68 4.98 -29.46 -0.15 0.54 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.41 6.79 -51.93 -0.35 1.06 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.05 1.25 6.43 -51.93 -0.33 0.91 16 41 H 0.04 0.94 7.92 -51.93 -0.41 0.53 16 42 H 0.05 1.55 6.78 -51.93 -0.35 1.20 16 43 H 0.00 -0.12 7.81 -51.93 -0.41 -0.53 16 44 H 0.03 0.81 7.32 -51.93 -0.38 0.43 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -33.19 374.39 -8.39 -41.58 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.54 Total: -2.21 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 0.46 Total: 10.61 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.61 Total: -58.00 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.29 Total: -14.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.02 Total: 0.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.19 -8.39 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281967571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.823 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds