Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35731 * 116.99898 * 2 1 4 4 C 1.39356 * 120.36128 * 359.97438 * 3 2 1 5 5 N 1.31290 * 120.88103 * 180.02562 * 4 3 2 6 6 C 1.32887 * 121.71608 * 359.97438 * 5 4 3 7 7 C 1.47761 * 119.68419 * 180.02562 * 6 5 4 8 8 O 1.21567 * 120.00234 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99962 * 359.97438 * 7 6 5 10 10 C 1.46503 * 120.00179 * 184.20238 * 9 7 6 11 11 C 1.52994 * 113.28293 * 307.09276 * 10 9 7 12 12 C 1.52999 * 109.47193 * 292.26006 * 11 10 9 13 13 O 1.42895 * 109.47064 * 174.82995 * 12 11 10 14 14 C 1.53498 * 114.20693 * 174.02277 * 10 9 7 15 15 N 1.47068 * 87.98527 * 220.14891 * 14 10 9 16 16 C 1.36939 * 136.06109 * 207.08373 * 15 14 10 17 17 H 1.08002 * 119.99521 * 5.84336 * 16 15 14 18 18 C 1.38808 * 120.00336 * 185.84036 * 16 15 14 19 19 N 1.31621 * 119.99782 * 6.67685 * 18 16 15 20 20 Si 1.86800 * 120.00030 * 186.95059 * 18 16 15 21 21 H 1.48497 * 109.47221 * 264.84378 * 20 18 16 22 22 H 1.48504 * 109.47131 * 24.84898 * 20 18 16 23 23 H 1.48502 * 109.46881 * 144.84604 * 20 18 16 24 24 C 1.47069 * 87.88566 * 27.34565 * 15 14 10 25 25 C 1.39714 * 120.62888 * 0.27486 * 6 5 4 26 26 F 1.35099 * 120.46526 * 179.69828 * 25 6 5 27 27 C 1.38694 * 119.06699 * 359.46085 * 25 6 5 28 28 H 1.08996 * 109.47283 * 300.00495 * 1 2 3 29 29 H 1.09001 * 109.46817 * 60.00538 * 1 2 3 30 30 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.55766 * 0.04771 * 4 3 2 32 32 H 0.97001 * 120.00501 * 4.20660 * 9 7 6 33 33 H 1.09005 * 109.47321 * 52.25851 * 11 10 9 34 34 H 1.09000 * 109.47292 * 172.25633 * 11 10 9 35 35 H 1.09005 * 109.46942 * 294.82708 * 12 11 10 36 36 H 1.08997 * 109.46989 * 54.82806 * 12 11 10 37 37 H 0.96702 * 113.99874 * 179.97438 * 13 12 11 38 38 H 1.09003 * 113.46410 * 105.37310 * 14 10 9 39 39 H 1.08994 * 113.52114 * 334.93875 * 14 10 9 40 40 H 0.97006 * 120.00071 * 180.27772 * 19 18 16 41 41 H 1.09004 * 113.46928 * 87.43513 * 24 15 14 42 42 H 1.08997 * 113.47023 * 217.87676 * 24 15 14 43 43 H 1.07997 * 120.78081 * 180.23908 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2935 2.3829 -0.0005 5 7 1.8789 3.5580 -0.0010 6 6 3.2022 3.6793 -0.0006 7 6 3.8138 5.0245 -0.0006 8 8 5.0237 5.1421 -0.0006 9 7 3.0301 6.1210 -0.0016 10 6 3.6337 7.4526 -0.0946 11 6 4.7195 7.6991 0.9547 12 6 4.0823 7.7546 2.3446 13 8 5.1072 7.8641 3.3343 14 6 2.6183 8.5958 -0.2302 15 7 3.5283 9.2194 -1.2028 16 6 3.7939 10.4935 -1.6284 17 1 3.3225 11.3346 -1.1418 18 6 4.6690 10.7041 -2.6851 19 7 5.1413 9.6793 -3.3627 20 14 5.1824 12.4414 -3.1407 21 1 4.3097 12.9456 -4.2312 22 1 5.0510 13.3238 -1.9534 23 1 6.5947 12.4360 -3.5995 24 6 4.0230 7.8716 -1.5219 25 6 4.0208 2.5471 -0.0053 26 9 5.3658 2.6743 -0.0109 27 6 3.4332 1.2908 0.0010 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2151 2.3248 -0.0002 32 1 2.0664 6.0285 0.0593 33 1 5.4479 6.8889 0.9210 34 1 5.2186 8.6453 0.7457 35 1 3.4224 8.6199 2.4075 36 1 3.5065 6.8452 2.5168 37 1 4.7750 7.9046 4.2416 38 1 2.4949 9.1773 0.6835 39 1 1.6677 8.2842 -0.6630 40 1 5.7560 9.8261 -4.0986 41 1 3.4431 7.3682 -2.2955 42 1 5.0963 7.8361 -1.7088 43 1 4.0395 0.3971 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282517889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = -56.460161 kcal Electronic energy + Delta-G solvation = -29845.639724 eV Core-core repulsion = 25422.821337 eV Total energy + Delta-G solvation = -4422.818387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.09554 -41.12943 -39.97708 -38.65744 -37.55668 -36.37553 -33.68919 -32.72861 -31.92622 -30.88989 -30.07299 -28.11675 -27.13009 -25.04528 -24.89343 -23.75130 -23.02105 -21.82906 -20.73703 -18.96234 -18.70594 -18.22793 -17.72725 -17.05188 -16.70569 -16.62048 -16.48701 -15.82940 -15.46593 -15.37502 -15.10868 -14.79230 -14.62779 -14.25663 -13.80156 -13.74356 -13.64725 -13.57348 -13.33164 -12.96982 -12.60643 -12.54052 -12.06590 -11.90972 -11.59402 -11.45667 -11.16430 -10.96576 -10.82609 -10.64738 -10.30127 -10.15268 -9.99558 -9.89228 -9.72304 -9.49221 -9.06398 -8.94638 -8.77217 -8.46072 -6.91681 -5.77303 -3.10230 0.28978 0.61539 2.44241 2.67102 3.21963 3.41488 3.46416 3.49138 3.60434 3.81276 3.88285 4.06040 4.38521 4.48307 4.50727 4.56084 4.60736 4.62128 4.92473 4.97958 5.06765 5.29029 5.36990 5.45865 5.52634 5.58461 5.68143 5.85391 5.96627 5.99304 6.22463 6.40335 6.48633 6.54968 6.59918 6.92517 6.95123 7.20779 7.23229 7.35619 7.55155 7.89370 7.91466 7.96229 8.51048 9.02344 9.69305 10.60292 11.40624 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002899 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.498724 B = 9657.301851 C =10185.950093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.127 3.873 4 C 0.008 3.992 5 N -0.391 5.391 6 C 0.014 3.986 7 C 0.569 3.431 8 O -0.511 6.511 9 N -0.691 5.691 10 C 0.117 3.883 11 C -0.102 4.102 12 C 0.083 3.917 13 O -0.572 6.572 14 C 0.117 3.883 15 N -0.598 5.598 16 C -0.222 4.222 17 H 0.083 0.917 18 C -0.004 4.004 19 N -0.913 5.913 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.279 1.279 23 H -0.289 1.289 24 C 0.166 3.834 25 C 0.156 3.844 26 F -0.095 7.095 27 C -0.161 4.161 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.172 0.828 32 H 0.405 0.595 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.035 0.965 37 H 0.370 0.630 38 H 0.048 0.952 39 H 0.037 0.963 40 H 0.255 0.745 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.762 -20.110 10.557 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.215 6.215 3 C 0.077 3.923 4 C -0.155 4.155 5 N -0.103 5.103 6 C -0.125 4.125 7 C 0.353 3.647 8 O -0.386 6.386 9 N -0.342 5.342 10 C 0.031 3.969 11 C -0.140 4.140 12 C 0.005 3.995 13 O -0.377 6.377 14 C -0.010 4.010 15 N -0.324 5.324 16 C -0.349 4.349 17 H 0.101 0.899 18 C -0.201 4.201 19 N -0.559 5.559 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.204 1.204 23 H -0.215 1.215 24 C 0.039 3.961 25 C 0.133 3.867 26 F -0.073 7.073 27 C -0.188 4.188 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.189 0.811 32 H 0.240 0.760 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.215 0.785 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.676 -19.152 9.778 24.008 hybrid contribution -0.403 0.018 -0.035 0.405 sum -11.079 -19.133 9.743 24.161 Atomic orbital electron populations 1.23259 0.77022 1.04956 1.02198 1.86065 1.22408 1.25533 1.87459 1.19996 0.92057 0.86070 0.94130 1.23045 1.01039 0.86467 1.04908 1.67503 1.09457 1.26748 1.06578 1.21516 0.89259 0.94546 1.07224 1.17478 0.86552 0.82809 0.77907 1.90842 1.13057 1.85714 1.48997 1.45764 1.10300 1.05250 1.72852 1.22766 0.95728 0.79260 0.99148 1.21411 0.97737 1.05188 0.89651 1.22163 0.89633 0.98600 0.89076 1.86530 1.35870 1.97243 1.18024 1.22675 0.92998 0.91032 0.94262 1.45329 1.40599 1.01625 1.44876 1.18867 1.23126 0.80672 1.12216 0.89881 1.24853 1.00488 0.97616 0.97182 1.69867 1.35051 1.28639 1.22354 0.86085 0.77886 0.83451 0.78204 1.21631 1.20431 1.21509 1.22359 1.00395 0.84020 0.89334 1.18264 0.78939 0.92714 0.96814 1.91670 1.27039 1.96391 1.92178 1.20827 0.92887 0.97774 1.07320 0.91810 0.91749 0.87444 0.81103 0.75968 0.88623 0.89208 0.93858 0.94681 0.78454 0.93384 0.94594 0.93477 0.95016 0.91235 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.82 101.05 0.99 1.06 16 2 O -0.30 -2.17 10.50 -18.90 -0.20 -2.37 16 3 C 0.13 1.11 6.72 -38.87 -0.26 0.85 16 4 C 0.01 0.07 10.21 -17.37 -0.18 -0.11 16 5 N -0.39 -4.67 9.53 -9.64 -0.09 -4.77 16 6 C 0.01 0.21 6.75 -82.97 -0.56 -0.35 16 7 C 0.57 10.01 7.60 -12.37 -0.09 9.91 16 8 O -0.51 -10.74 12.99 5.31 0.07 -10.67 16 9 N -0.69 -11.49 5.04 -48.26 -0.24 -11.73 16 10 C 0.12 2.31 0.84 -131.56 -0.11 2.20 16 11 C -0.10 -2.05 4.89 -26.73 -0.13 -2.18 16 12 C 0.08 1.36 6.81 37.16 0.25 1.61 16 13 O -0.57 -9.25 13.66 -35.23 -0.48 -9.73 16 14 C 0.12 2.37 7.82 -8.50 -0.07 2.30 16 15 N -0.60 -15.43 3.54 -184.55 -0.65 -16.08 16 16 C -0.22 -6.23 10.73 -15.06 -0.16 -6.39 16 17 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 18 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 19 N -0.91 -27.80 11.79 55.49 0.65 -27.15 16 20 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 C 0.17 4.11 6.63 -8.36 -0.06 4.05 16 25 C 0.16 2.07 7.31 -38.86 -0.28 1.79 16 26 F -0.09 -1.47 15.54 2.25 0.03 -1.43 16 27 C -0.16 -1.62 10.10 -39.11 -0.40 -2.01 16 28 H 0.06 0.13 7.67 -51.93 -0.40 -0.26 16 29 H 0.06 0.15 7.67 -51.93 -0.40 -0.24 16 30 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.17 0.90 6.31 -52.49 -0.33 0.57 16 32 H 0.40 5.73 8.00 -40.82 -0.33 5.40 16 33 H 0.10 2.11 5.71 -51.93 -0.30 1.81 16 34 H 0.09 2.06 7.94 -51.93 -0.41 1.65 16 35 H 0.04 0.67 6.94 -51.93 -0.36 0.31 16 36 H 0.03 0.53 7.90 -51.93 -0.41 0.12 16 37 H 0.37 3.89 9.12 45.56 0.42 4.30 16 38 H 0.05 0.90 6.84 -51.93 -0.36 0.54 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.97 7.53 -51.93 -0.39 1.58 16 43 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -36.06 365.47 -6.08 -42.14 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.50 Total: 6.38 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -1.15 Total: 12.52 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.33 Total: -59.73 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.61 Total: -22.77 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.03 Total: -1.43 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.06 -6.08 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282517889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.318 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds