Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35731 * 116.99898 * 2 1 4 4 C 1.39356 * 120.36128 * 359.97438 * 3 2 1 5 5 N 1.31290 * 120.88103 * 180.02562 * 4 3 2 6 6 C 1.32887 * 121.71608 * 359.97438 * 5 4 3 7 7 C 1.47761 * 119.68419 * 180.02562 * 6 5 4 8 8 O 1.21567 * 120.00234 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99962 * 359.97438 * 7 6 5 10 10 C 1.46503 * 120.00179 * 184.20238 * 9 7 6 11 11 C 1.52994 * 113.28293 * 307.09276 * 10 9 7 12 12 C 1.52999 * 109.47193 * 292.26006 * 11 10 9 13 13 O 1.42895 * 109.47064 * 174.82995 * 12 11 10 14 14 C 1.53498 * 114.20693 * 174.02277 * 10 9 7 15 15 N 1.47068 * 87.98527 * 220.14891 * 14 10 9 16 16 C 1.36939 * 136.06109 * 207.08373 * 15 14 10 17 17 H 1.08002 * 119.99521 * 5.84336 * 16 15 14 18 18 C 1.38808 * 120.00336 * 185.84036 * 16 15 14 19 19 N 1.31621 * 119.99782 * 6.67685 * 18 16 15 20 20 Si 1.86800 * 120.00030 * 186.95059 * 18 16 15 21 21 H 1.48497 * 109.47221 * 264.84378 * 20 18 16 22 22 H 1.48504 * 109.47131 * 24.84898 * 20 18 16 23 23 H 1.48502 * 109.46881 * 144.84604 * 20 18 16 24 24 C 1.47069 * 87.88566 * 27.34565 * 15 14 10 25 25 C 1.39714 * 120.62888 * 0.27486 * 6 5 4 26 26 F 1.35099 * 120.46526 * 179.69828 * 25 6 5 27 27 C 1.38694 * 119.06699 * 359.46085 * 25 6 5 28 28 H 1.08996 * 109.47283 * 300.00495 * 1 2 3 29 29 H 1.09001 * 109.46817 * 60.00538 * 1 2 3 30 30 H 1.08997 * 109.47215 * 179.97438 * 1 2 3 31 31 H 1.07997 * 119.55766 * 0.04771 * 4 3 2 32 32 H 0.97001 * 120.00501 * 4.20660 * 9 7 6 33 33 H 1.09005 * 109.47321 * 52.25851 * 11 10 9 34 34 H 1.09000 * 109.47292 * 172.25633 * 11 10 9 35 35 H 1.09005 * 109.46942 * 294.82708 * 12 11 10 36 36 H 1.08997 * 109.46989 * 54.82806 * 12 11 10 37 37 H 0.96702 * 113.99874 * 179.97438 * 13 12 11 38 38 H 1.09003 * 113.46410 * 105.37310 * 14 10 9 39 39 H 1.08994 * 113.52114 * 334.93875 * 14 10 9 40 40 H 0.97006 * 120.00071 * 180.27772 * 19 18 16 41 41 H 1.09004 * 113.46928 * 87.43513 * 24 15 14 42 42 H 1.08997 * 113.47023 * 217.87676 * 24 15 14 43 43 H 1.07997 * 120.78081 * 180.23908 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 1.2935 2.3829 -0.0005 5 7 1.8789 3.5580 -0.0010 6 6 3.2022 3.6793 -0.0006 7 6 3.8138 5.0245 -0.0006 8 8 5.0237 5.1421 -0.0006 9 7 3.0301 6.1210 -0.0016 10 6 3.6337 7.4526 -0.0946 11 6 4.7195 7.6991 0.9547 12 6 4.0823 7.7546 2.3446 13 8 5.1072 7.8641 3.3343 14 6 2.6183 8.5958 -0.2302 15 7 3.5283 9.2194 -1.2028 16 6 3.7939 10.4935 -1.6284 17 1 3.3225 11.3346 -1.1418 18 6 4.6690 10.7041 -2.6851 19 7 5.1413 9.6793 -3.3627 20 14 5.1824 12.4414 -3.1407 21 1 4.3097 12.9456 -4.2312 22 1 5.0510 13.3238 -1.9534 23 1 6.5947 12.4360 -3.5995 24 6 4.0230 7.8716 -1.5219 25 6 4.0208 2.5471 -0.0053 26 9 5.3658 2.6743 -0.0109 27 6 3.4332 1.2908 0.0010 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2151 2.3248 -0.0002 32 1 2.0664 6.0285 0.0593 33 1 5.4479 6.8889 0.9210 34 1 5.2186 8.6453 0.7457 35 1 3.4224 8.6199 2.4075 36 1 3.5065 6.8452 2.5168 37 1 4.7750 7.9046 4.2416 38 1 2.4949 9.1773 0.6835 39 1 1.6677 8.2842 -0.6630 40 1 5.7560 9.8261 -4.0986 41 1 3.4431 7.3682 -2.2955 42 1 5.0963 7.8361 -1.7088 43 1 4.0395 0.3971 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282517889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = -87.082844 kcal Electronic energy + Delta-G solvation = -29846.967623 eV Core-core repulsion = 25422.821337 eV Total energy + Delta-G solvation = -4424.146286 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.15747 -42.03690 -41.36727 -39.74962 -38.78994 -37.70662 -35.33659 -34.01995 -33.37714 -32.19555 -31.31602 -29.13842 -28.45524 -26.71300 -26.11634 -25.03812 -24.14586 -23.45781 -22.14612 -20.28047 -19.67868 -19.29051 -18.80007 -18.73806 -18.29866 -17.41243 -17.36213 -17.15034 -16.71465 -16.58670 -16.47750 -16.05400 -15.84867 -15.69607 -15.43682 -15.05131 -14.94811 -14.49617 -14.38796 -14.23603 -13.96810 -13.75034 -13.20450 -13.16871 -12.97940 -12.91513 -12.80241 -12.69250 -12.48361 -12.35178 -12.06181 -11.81760 -11.40848 -11.20093 -10.95179 -10.85924 -10.72947 -10.53346 -10.12517 -9.67438 -9.00483 -7.94615 -5.29051 -0.63778 -0.18946 1.44165 1.47846 1.56988 1.57750 1.80551 1.98580 2.47197 2.52846 2.89355 2.97056 3.13747 3.29014 3.34683 3.36648 3.57173 3.71665 3.75545 4.02547 4.12277 4.27963 4.30460 4.42977 4.45539 4.46090 4.46822 4.59846 4.70671 4.72007 4.84591 4.89532 4.99133 5.14146 5.15705 5.16531 5.29252 5.43149 5.66014 5.83447 5.98673 6.31205 6.61286 6.83696 6.94240 7.18024 7.55606 8.52954 9.24093 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002899 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.498724 B = 9657.301851 C =10185.950093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.307 6.307 3 C 0.148 3.852 4 C 0.022 3.978 5 N -0.397 5.397 6 C -0.014 4.014 7 C 0.566 3.434 8 O -0.556 6.556 9 N -0.679 5.679 10 C 0.147 3.853 11 C -0.097 4.097 12 C 0.095 3.905 13 O -0.593 6.593 14 C 0.128 3.872 15 N -0.626 5.626 16 C -0.226 4.226 17 H 0.097 0.903 18 C -0.070 4.070 19 N -0.956 5.956 20 Si 0.984 3.016 21 H -0.283 1.283 22 H -0.262 1.262 23 H -0.299 1.299 24 C 0.163 3.837 25 C 0.137 3.863 26 F -0.118 7.118 27 C -0.160 4.160 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.214 0.786 32 H 0.421 0.579 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.397 0.603 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.248 0.752 41 H 0.016 0.984 42 H 0.018 0.982 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.475 -21.401 12.392 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.217 6.217 3 C 0.097 3.903 4 C -0.143 4.143 5 N -0.108 5.108 6 C -0.151 4.151 7 C 0.352 3.648 8 O -0.434 6.434 9 N -0.331 5.331 10 C 0.059 3.941 11 C -0.136 4.136 12 C 0.017 3.983 13 O -0.401 6.401 14 C 0.002 3.998 15 N -0.352 5.352 16 C -0.354 4.354 17 H 0.115 0.885 18 C -0.263 4.263 19 N -0.604 5.604 20 Si 0.811 3.189 21 H -0.210 1.210 22 H -0.186 1.186 23 H -0.226 1.226 24 C 0.035 3.965 25 C 0.114 3.886 26 F -0.096 7.096 27 C -0.186 4.186 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.145 0.855 31 H 0.231 0.769 32 H 0.259 0.741 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.246 0.754 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.037 0.963 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -14.459 -20.456 11.675 27.637 hybrid contribution 0.576 0.158 -0.561 0.820 sum -13.883 -20.297 11.114 26.986 Atomic orbital electron populations 1.23695 0.74506 1.06966 1.03698 1.86100 1.24894 1.24331 1.86414 1.20013 0.91579 0.86941 0.91718 1.23729 1.02794 0.85330 1.02412 1.67467 1.07982 1.28397 1.06988 1.20907 0.90518 0.92688 1.11033 1.17997 0.86101 0.84201 0.76519 1.90822 1.15130 1.86630 1.50846 1.45487 1.10968 1.03850 1.72807 1.22105 0.95408 0.81101 0.95452 1.21256 0.97503 1.02104 0.92739 1.21965 0.89252 1.00283 0.86763 1.86467 1.36532 1.97309 1.19837 1.22793 0.92833 0.90368 0.93806 1.45580 1.42586 1.01247 1.45836 1.19360 1.22270 0.82191 1.11558 0.88541 1.25783 1.01175 1.01597 0.97784 1.70087 1.36207 1.30960 1.23125 0.84990 0.76647 0.78918 0.78337 1.20982 1.18592 1.22566 1.22240 0.97032 0.84798 0.92402 1.18501 0.78063 0.93850 0.98210 1.91607 1.28735 1.96607 1.92650 1.20983 0.93985 0.96969 1.06669 0.90044 0.90396 0.85451 0.76922 0.74077 0.91147 0.92898 0.92018 0.92782 0.75373 0.90824 0.91998 0.94364 0.96660 0.96339 0.80146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -3.12 10.50 -90.54 -0.95 -4.07 16 3 C 0.15 2.10 6.72 22.73 0.15 2.25 16 4 C 0.02 0.30 10.21 85.04 0.87 1.17 16 5 N -0.40 -8.63 9.53 -184.40 -1.76 -10.38 16 6 C -0.01 -0.41 6.75 41.86 0.28 -0.13 16 7 C 0.57 20.61 7.60 86.76 0.66 21.27 16 8 O -0.56 -25.08 12.99 -3.93 -0.05 -25.13 16 9 N -0.68 -22.62 5.04 -424.86 -2.14 -24.76 16 10 C 0.15 5.92 0.84 4.16 0.00 5.92 16 11 C -0.10 -4.07 4.89 30.59 0.15 -3.93 16 12 C 0.09 2.98 6.81 71.98 0.49 3.47 16 13 O -0.59 -18.48 13.66 -148.98 -2.03 -20.52 16 14 C 0.13 4.98 7.82 83.18 0.65 5.63 16 15 N -0.63 -33.00 3.54 -737.78 -2.61 -35.61 16 16 C -0.23 -12.88 10.73 84.03 0.90 -11.98 16 17 H 0.10 5.10 7.84 -2.91 -0.02 5.08 16 18 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 19 N -0.96 -61.30 11.79 21.65 0.26 -61.04 16 20 Si 0.98 47.19 29.56 68.60 2.03 49.22 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 24 C 0.16 8.56 6.63 83.27 0.55 9.11 16 25 C 0.14 3.69 7.31 22.74 0.17 3.85 16 26 F -0.12 -3.88 15.54 44.97 0.70 -3.18 16 27 C -0.16 -2.95 10.10 22.57 0.23 -2.72 16 28 H 0.08 -0.10 7.67 -2.39 -0.02 -0.12 16 29 H 0.08 -0.03 7.67 -2.39 -0.02 -0.05 16 30 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.21 1.04 6.31 -2.91 -0.02 1.02 16 32 H 0.42 11.25 8.00 -92.71 -0.74 10.51 16 33 H 0.07 3.32 5.71 -2.38 -0.01 3.30 16 34 H 0.05 2.57 7.94 -2.39 -0.02 2.55 16 35 H 0.06 1.73 6.94 -2.38 -0.02 1.71 16 36 H 0.05 1.51 7.90 -2.39 -0.02 1.49 16 37 H 0.40 7.43 9.12 -74.06 -0.68 6.75 16 38 H 0.07 2.54 6.84 -2.39 -0.02 2.53 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.25 15.47 8.31 -92.70 -0.77 14.69 16 41 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.02 1.13 7.53 -2.39 -0.02 1.11 16 43 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -85.53 365.47 -0.21 -85.74 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -0.33 Total: 18.40 kcal Atomic # 6 Polarization: 24.67 SS G_CDS: 6.68 Total: 31.35 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -6.26 Total: -131.80 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -3.04 Total: -49.72 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.70 Total: -3.18 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -85.53 -0.21 -85.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282517889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.342 kcal (2) G-P(sol) polarization free energy of solvation -85.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds