Wall clock time and date at job start Sat Apr 11 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00003 * 2 1 4 4 C 1.53003 * 109.47325 * 270.00476 * 3 2 1 5 5 C 1.52996 * 109.47001 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46804 * 179.97438 * 5 4 3 7 7 C 1.34770 * 120.00296 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00095 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00589 * 180.02562 * 7 6 5 10 10 S 1.80998 * 109.47487 * 180.02562 * 9 7 6 11 11 C 1.76194 * 100.00239 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99616 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00457 * 180.02562 * 11 10 9 14 14 N 1.31632 * 119.99551 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00412 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46932 * 89.99920 * 15 13 11 17 17 H 1.48493 * 109.47370 * 209.99743 * 15 13 11 18 18 H 1.48497 * 109.47263 * 330.00248 * 15 13 11 19 19 C 1.34779 * 120.00209 * 180.02562 * 2 1 3 20 20 O 1.21697 * 119.99891 * 186.05180 * 19 2 1 21 21 C 1.46678 * 119.99742 * 6.04733 * 19 2 1 22 22 C 1.37864 * 126.23571 * 357.54230 * 21 19 2 23 23 C 1.39840 * 107.08642 * 179.97438 * 22 21 19 24 24 C 1.35449 * 107.86478 * 359.97438 * 23 22 21 25 25 N 1.35538 * 108.87173 * 0.02562 * 24 23 22 26 26 C 1.46494 * 125.68010 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47109 * 246.67150 * 1 2 3 28 28 H 1.08999 * 109.47829 * 6.67137 * 1 2 3 29 29 H 1.09001 * 109.47247 * 126.67892 * 1 2 3 30 30 H 1.09002 * 109.46932 * 30.00060 * 3 2 1 31 31 H 1.08997 * 109.47320 * 149.99809 * 3 2 1 32 32 H 1.09001 * 109.46258 * 299.99631 * 4 3 2 33 33 H 1.09000 * 109.46792 * 59.99149 * 4 3 2 34 34 H 1.09002 * 109.47119 * 299.99501 * 5 4 3 35 35 H 1.08994 * 109.47393 * 60.00224 * 5 4 3 36 36 H 0.97006 * 120.00224 * 0.02562 * 6 5 4 37 37 H 1.09002 * 109.46940 * 300.00123 * 9 7 6 38 38 H 1.08997 * 109.47206 * 59.99807 * 9 7 6 39 39 H 0.97006 * 119.99950 * 179.97438 * 14 13 11 40 40 H 1.08001 * 126.45906 * 359.71255 * 22 21 19 41 41 H 1.07999 * 126.06591 * 179.97438 * 23 22 21 42 42 H 1.07997 * 125.56648 * 180.02562 * 24 23 22 43 43 H 1.09005 * 109.47289 * 275.46225 * 26 25 24 44 44 H 1.09000 * 109.47232 * 35.46293 * 26 25 24 45 45 H 1.09001 * 109.47541 * 155.46364 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0358 -1.4424 6 7 3.4614 3.4585 -2.8236 7 6 4.1231 4.6064 -3.0700 8 8 4.5165 5.2894 -2.1482 9 6 4.3742 5.0416 -4.4908 10 16 5.2787 6.6094 -4.4908 11 6 5.4324 6.8740 -6.2260 12 1 5.0196 6.1569 -6.9202 13 6 6.0848 8.0033 -6.7007 14 7 6.5883 8.8769 -5.8546 15 14 6.2484 8.2835 -8.5403 16 1 5.0791 9.0577 -9.0290 17 1 7.4947 9.0420 -8.8167 18 1 6.3011 6.9736 -9.2378 19 6 2.1389 -1.1672 -0.0005 20 8 3.3508 -1.1701 0.1106 21 6 1.4116 -2.4339 -0.1349 22 6 0.0438 -2.5831 -0.2204 23 6 -0.2136 -3.9526 -0.3376 24 6 0.9751 -4.6016 -0.3225 25 7 1.9707 -3.6901 -0.1996 26 6 3.4033 -3.9915 -0.1455 27 1 -0.3633 -0.4070 0.9437 28 1 -0.3635 1.0207 -0.1194 29 1 -0.3634 -0.6139 -0.8242 30 1 1.6084 2.0284 0.5139 31 1 3.1498 1.1385 0.5138 32 1 3.0415 0.9508 -1.9563 33 1 1.4999 1.8407 -1.9563 34 1 2.6273 3.7953 -0.9287 35 1 4.1692 2.9059 -0.9286 36 1 3.1465 2.9125 -3.5610 37 1 4.9640 4.2823 -5.0044 38 1 3.4219 5.1711 -5.0048 39 1 7.0446 9.6661 -6.1864 40 1 -0.6909 -1.7918 -0.1967 41 1 -1.1875 -4.4113 -0.4246 42 1 1.1081 -5.6708 -0.3964 43 1 3.6841 -4.2393 0.8782 44 1 3.6214 -4.8378 -0.7970 45 1 3.9704 -3.1219 -0.4774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283495113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:49 Heat of formation + Delta-G solvation = -29.601559 kcal Electronic energy + Delta-G solvation = -25610.743555 eV Core-core repulsion = 21755.303020 eV Total energy + Delta-G solvation = -3855.440535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.41653 -40.68271 -40.25602 -37.40998 -36.19801 -34.58906 -33.92381 -33.06022 -31.06923 -29.90276 -28.40672 -27.69364 -27.11145 -26.40580 -23.39537 -22.30978 -21.83721 -21.40900 -20.19967 -19.82692 -18.15152 -17.80806 -17.65638 -17.21074 -16.88703 -16.82036 -16.77275 -16.42745 -15.80403 -15.66576 -15.64758 -14.97928 -14.76369 -14.58272 -14.37076 -14.13963 -14.02488 -13.86471 -13.60931 -13.44713 -13.19042 -13.17063 -13.15808 -12.94673 -12.88695 -12.68097 -12.59494 -12.00023 -11.77362 -11.73424 -11.14542 -11.05270 -10.95638 -10.28534 -10.14207 -9.85111 -9.61516 -9.16750 -8.67446 -8.34951 -6.13333 0.47265 1.26049 1.42418 1.45924 1.55558 1.59658 1.61491 1.84447 2.19317 2.27095 2.33870 2.40236 2.99118 3.31581 3.53233 3.87517 3.93506 3.97176 3.97904 4.15622 4.19873 4.28327 4.32262 4.34833 4.41957 4.47128 4.49911 4.53606 4.56474 4.67423 4.70896 4.79357 4.93556 5.01628 5.10741 5.19701 5.28611 5.40912 5.41646 5.49025 5.85855 6.04798 6.19504 6.27059 6.35027 6.48155 7.06192 7.06841 7.22372 8.74319 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.001602 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.925309 B =17472.793403 C =17814.317389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.599 5.599 3 C 0.120 3.880 4 C -0.127 4.127 5 C 0.125 3.875 6 N -0.714 5.714 7 C 0.533 3.467 8 O -0.566 6.566 9 C -0.130 4.130 10 S -0.152 6.152 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.259 1.259 19 C 0.577 3.423 20 O -0.591 6.591 21 C -0.092 4.092 22 C -0.155 4.155 23 C -0.223 4.223 24 C 0.016 3.984 25 N -0.425 5.425 26 C 0.062 3.938 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.416 0.584 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.192 0.808 41 H 0.165 0.835 42 H 0.197 0.803 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.350 -30.356 11.091 37.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.330 5.330 3 C -0.003 4.003 4 C -0.166 4.166 5 C 0.000 4.000 6 N -0.368 5.368 7 C 0.318 3.682 8 O -0.445 6.445 9 C -0.281 4.281 10 S 0.075 5.925 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.547 5.547 15 Si 0.821 3.179 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.183 1.183 19 C 0.369 3.631 20 O -0.474 6.474 21 C -0.204 4.204 22 C -0.181 4.181 23 C -0.247 4.247 24 C -0.119 4.119 25 N -0.098 5.098 26 C -0.079 4.079 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.130 0.870 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.252 0.748 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.208 0.792 41 H 0.182 0.818 42 H 0.214 0.786 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.603 -29.122 12.757 36.341 hybrid contribution 0.143 -0.564 -2.115 2.194 sum -17.460 -29.686 10.641 36.046 Atomic orbital electron populations 1.22810 0.76934 1.05539 1.03405 1.47492 1.08598 1.04481 1.72427 1.21431 0.98254 0.84490 0.96158 1.21984 1.01424 0.94801 0.98389 1.21250 0.99924 0.96342 0.82442 1.45741 1.58137 1.23034 1.09846 1.20078 0.77034 0.80958 0.90091 1.90691 1.51726 1.55025 1.47020 1.23377 1.05456 1.02435 0.96847 1.85577 1.72629 1.23338 1.10933 1.23211 1.43193 1.11572 0.91544 0.89886 1.26141 0.93933 0.94436 1.04675 1.70188 1.35880 1.11668 1.37008 0.84939 0.78044 0.78839 0.76061 1.19178 1.20304 1.18262 1.17415 0.85933 0.83810 0.75989 1.90759 1.15536 1.87876 1.53216 1.20110 0.93719 0.85547 1.21042 1.22867 0.93016 0.98957 1.03249 1.21314 0.98564 0.93708 1.11102 1.22697 0.86952 0.96511 1.05758 1.44121 1.07839 1.05247 1.52586 1.22331 0.77278 1.04059 1.04195 0.90415 0.88109 0.88874 0.86969 0.91426 0.92320 0.88616 0.90935 0.93095 0.74751 0.87430 0.86934 0.91978 0.79153 0.81766 0.78643 0.90224 0.87428 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.34 8.61 127.77 1.10 1.44 16 2 N -0.60 -8.89 2.87 -851.49 -2.45 -11.34 16 3 C 0.12 1.80 5.40 86.38 0.47 2.27 16 4 C -0.13 -1.97 5.65 30.59 0.17 -1.80 16 5 C 0.12 2.76 5.67 86.38 0.49 3.25 16 6 N -0.71 -18.34 5.56 -463.07 -2.57 -20.91 16 7 C 0.53 20.05 7.85 87.66 0.69 20.73 16 8 O -0.57 -26.79 15.86 -3.04 -0.05 -26.84 16 9 C -0.13 -5.22 6.16 71.24 0.44 -4.78 16 10 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 11 C -0.55 -31.55 9.50 67.95 0.65 -30.90 16 12 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 13 C 0.01 0.74 5.49 84.86 0.47 1.21 16 14 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 15 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 19 C 0.58 12.40 7.63 86.45 0.66 13.06 16 20 O -0.59 -16.99 14.13 -4.34 -0.06 -17.05 16 21 C -0.09 -1.67 6.83 40.35 0.28 -1.40 16 22 C -0.16 -1.91 8.87 22.57 0.20 -1.71 16 23 C -0.22 -2.39 10.81 22.01 0.24 -2.15 16 24 C 0.02 0.18 11.38 83.48 0.95 1.13 16 25 N -0.42 -6.89 3.16 -534.32 -1.69 -8.58 16 26 C 0.06 0.86 10.71 127.77 1.37 2.23 16 27 H 0.08 0.37 7.42 -2.39 -0.02 0.35 16 28 H 0.10 0.23 7.86 -2.39 -0.02 0.21 16 29 H 0.09 0.44 5.39 -2.39 -0.01 0.43 16 30 H 0.11 1.09 7.98 -2.39 -0.02 1.07 16 31 H 0.07 1.37 7.35 -2.39 -0.02 1.35 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.42 7.84 8.47 -92.70 -0.79 7.05 16 37 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 38 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 39 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 40 H 0.19 1.19 4.06 -2.91 -0.01 1.18 16 41 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.20 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 1.58 6.07 -2.39 -0.01 1.57 16 Total: -1.00 -87.59 388.79 2.72 -84.87 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.23 Total: 17.22 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 8.16 Total: 2.58 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -6.42 Total: -96.93 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.11 Total: -43.88 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -87.59 2.72 -84.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283495113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.266 kcal (2) G-P(sol) polarization free energy of solvation -87.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds