Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35676 * 117.00138 * 2 1 4 4 N 1.32278 * 119.68421 * 0.24937 * 3 2 1 5 5 C 1.31934 * 121.64825 * 180.29032 * 4 3 2 6 6 C 1.38081 * 120.83465 * 359.72165 * 5 4 3 7 7 C 1.38792 * 119.28901 * 0.02562 * 6 5 4 8 8 C 1.38423 * 118.48152 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.44244 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47033 * 260.00366 * 9 8 7 11 11 C 1.46900 * 110.99850 * 293.95020 * 10 9 8 12 12 C 1.46906 * 111.00051 * 170.00053 * 10 9 8 13 13 C 1.52993 * 109.47378 * 189.99991 * 12 10 9 14 14 N 1.46496 * 109.47551 * 180.02562 * 13 12 10 15 15 C 1.34777 * 120.00258 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99757 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.46848 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99904 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99972 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99695 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00104 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99570 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47083 * 60.00261 * 23 21 19 25 25 H 1.48505 * 109.46589 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47322 * 299.99919 * 23 21 19 27 27 H 1.09003 * 109.47271 * 299.99947 * 1 2 3 28 28 H 1.09000 * 109.47399 * 60.00144 * 1 2 3 29 29 H 1.09002 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.58302 * 179.74995 * 5 4 3 31 31 H 1.08006 * 120.36016 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.75952 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47644 * 140.00487 * 9 8 7 34 34 H 1.09000 * 109.47199 * 19.99764 * 9 8 7 35 35 H 1.08996 * 109.47030 * 296.04770 * 11 10 9 36 36 H 1.08999 * 109.46702 * 56.04909 * 11 10 9 37 37 H 1.08996 * 109.46890 * 176.04778 * 11 10 9 38 38 H 1.09004 * 109.47040 * 309.99779 * 12 10 9 39 39 H 1.09000 * 109.47033 * 69.99731 * 12 10 9 40 40 H 1.09004 * 109.46862 * 299.99897 * 13 12 10 41 41 H 1.09004 * 109.46998 * 59.99419 * 13 12 10 42 42 H 0.96999 * 119.99694 * 359.97438 * 14 13 12 43 43 H 1.08996 * 109.47390 * 299.99902 * 17 15 14 44 44 H 1.09004 * 109.47662 * 59.99777 * 17 15 14 45 45 H 0.97002 * 119.99547 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3143 0.0050 5 6 1.8768 3.5096 -0.0005 6 6 3.2505 3.6491 -0.0060 7 6 4.0483 2.5134 -0.0062 8 6 3.4322 1.2739 -0.0004 9 6 4.2557 0.0119 -0.0010 10 7 4.3158 -0.5329 -1.3639 11 6 2.9900 -0.9807 -1.8108 12 6 5.2969 -1.6228 -1.4525 13 6 5.5142 -1.9954 -2.9203 14 7 6.4921 -3.0826 -3.0087 15 6 6.8428 -3.5775 -4.2122 16 8 6.3483 -3.1232 -5.2222 17 6 7.8491 -4.6955 -4.3030 18 16 8.1061 -5.1364 -6.0396 19 6 9.2922 -6.4264 -5.8554 20 1 9.6321 -6.7109 -4.8706 21 6 9.7903 -7.0763 -6.9762 22 7 9.3764 -6.7292 -8.1766 23 14 11.0483 -8.4434 -6.7810 24 1 10.4678 -9.5368 -5.9608 25 1 11.4170 -8.9714 -8.1192 26 1 12.2594 -7.9093 -6.1081 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.2514 4.3902 -0.0002 31 1 3.6995 4.6315 -0.0101 32 1 5.1253 2.5949 -0.0109 33 1 3.7980 -0.7210 0.6634 34 1 5.2646 0.2362 0.3453 35 1 2.6540 -1.8053 -1.1822 36 1 2.2830 -0.1545 -1.7350 37 1 3.0493 -1.3142 -2.8468 38 1 6.2415 -1.2976 -1.0165 39 1 4.9254 -2.4911 -0.9084 40 1 4.5696 -2.3206 -3.3563 41 1 5.8856 -1.1269 -3.4645 42 1 6.8879 -3.4457 -2.2009 43 1 8.7936 -4.3705 -3.8666 44 1 7.4775 -5.5641 -3.7591 45 1 9.7243 -7.1836 -8.9598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317439102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -23.512445 kcal Electronic energy + Delta-G solvation = -25835.918117 eV Core-core repulsion = 21980.741626 eV Total energy + Delta-G solvation = -3855.176491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25877 -39.21715 -38.28826 -37.83794 -34.65385 -33.09721 -32.41165 -31.50372 -30.07482 -28.09657 -28.01877 -27.28083 -25.49476 -24.74882 -23.33563 -22.26073 -21.21476 -20.29864 -18.74617 -17.81940 -17.55650 -17.02470 -16.36783 -16.18461 -15.92379 -15.74590 -15.10994 -14.96601 -14.81237 -14.75812 -14.55767 -14.00968 -13.85037 -13.71379 -13.58415 -13.27354 -13.05705 -12.55684 -12.48011 -12.28691 -12.13317 -12.01713 -11.98223 -11.61204 -11.24592 -11.16597 -11.02919 -11.02517 -10.75696 -10.21002 -10.02930 -9.80848 -9.38751 -9.04752 -8.91727 -8.83164 -8.58255 -8.21759 -6.48045 -6.19829 -3.90383 0.69216 0.89512 2.69650 2.97603 3.14151 3.24137 3.24576 3.29433 3.36013 3.63296 3.88079 4.06020 4.22120 4.34763 4.47010 4.57380 4.68729 4.80996 4.88305 4.90394 4.93899 5.02520 5.06180 5.15080 5.19855 5.24653 5.26191 5.34153 5.40287 5.46691 5.63142 5.64284 5.78332 5.84174 5.89449 5.94477 6.00010 6.02835 6.15961 6.58182 6.68497 6.76048 6.82720 7.43143 7.60763 7.73864 8.36622 8.65346 9.25183 10.87521 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031233 B = 0.001612 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.272881 B =17366.642050 C =17592.159849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.302 6.302 3 C 0.325 3.675 4 N -0.541 5.541 5 C 0.135 3.865 6 C -0.209 4.209 7 C -0.026 4.026 8 C -0.145 4.145 9 C 0.107 3.893 10 N -0.533 5.533 11 C 0.019 3.981 12 C 0.046 3.954 13 C 0.125 3.875 14 N -0.739 5.739 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.158 0.842 31 H 0.138 0.862 32 H 0.142 0.858 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.072 18.950 23.066 33.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.209 6.209 3 C 0.146 3.854 4 N -0.264 5.264 5 C -0.020 4.020 6 C -0.229 4.229 7 C -0.052 4.052 8 C -0.149 4.149 9 C -0.021 4.021 10 N -0.257 5.257 11 C -0.129 4.129 12 C -0.083 4.083 13 C 0.000 4.000 14 N -0.395 5.395 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.176 0.824 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.230 0.770 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.563 19.695 20.856 33.124 hybrid contribution 1.871 -1.936 2.213 3.485 sum -14.692 17.759 23.069 32.610 Atomic orbital electron populations 1.22864 0.77413 1.03074 1.02466 1.86414 1.22803 1.24350 1.87334 1.19619 0.88918 0.84829 0.92081 1.67336 1.40855 0.98847 1.19360 1.22407 0.93019 0.93592 0.92994 1.22006 0.94887 0.99902 1.06153 1.21375 1.00800 0.90573 0.92446 1.19770 0.90936 0.96622 1.07540 1.20805 0.99000 0.92541 0.89713 1.61947 1.08124 1.32940 1.22679 1.22706 0.89565 1.00228 1.00398 1.22265 0.96499 0.92863 0.96626 1.21180 0.92889 0.90442 0.95468 1.45918 1.45945 1.38690 1.08900 1.20280 0.82107 0.83130 0.82675 1.90707 1.53797 1.59615 1.34927 1.23528 0.99837 0.98602 1.08400 1.85411 1.55758 1.45732 0.96446 1.22834 1.28232 1.21700 0.95689 0.90979 1.24993 0.96800 0.97330 0.94457 1.70012 1.41937 1.40561 0.97766 0.86225 0.80746 0.81008 0.77514 1.19966 1.20813 1.19947 0.92378 0.92174 0.88575 0.82434 0.84414 0.83973 0.93154 0.89632 0.94980 0.90537 0.91303 0.90074 0.94015 0.91631 0.90767 0.76981 0.89205 0.89257 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.38 101.05 1.05 1.29 16 2 O -0.30 -2.70 6.59 -18.73 -0.12 -2.82 16 3 C 0.32 3.07 6.24 -17.12 -0.11 2.96 16 4 N -0.54 -4.99 9.22 -13.33 -0.12 -5.12 16 5 C 0.14 0.94 11.18 -17.57 -0.20 0.75 16 6 C -0.21 -1.27 10.11 -39.43 -0.40 -1.67 16 7 C -0.03 -0.18 9.81 -39.31 -0.39 -0.56 16 8 C -0.15 -1.24 5.19 -104.32 -0.54 -1.78 16 9 C 0.11 0.86 5.00 -4.98 -0.02 0.83 16 10 N -0.53 -5.06 4.75 -244.37 -1.16 -6.22 16 11 C 0.02 0.18 7.87 60.06 0.47 0.66 16 12 C 0.05 0.41 5.07 -3.82 -0.02 0.39 16 13 C 0.12 1.54 5.60 -4.05 -0.02 1.52 16 14 N -0.74 -10.03 5.56 -60.30 -0.33 -10.37 16 15 C 0.53 10.13 7.85 -10.99 -0.09 10.04 16 16 O -0.52 -12.06 15.86 5.56 0.09 -11.97 16 17 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 23 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 31 H 0.14 0.49 8.06 -52.48 -0.42 0.06 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.05 0.41 7.86 -51.93 -0.41 0.01 16 34 H 0.09 0.54 7.82 -51.93 -0.41 0.14 16 35 H 0.03 0.31 7.93 -51.93 -0.41 -0.10 16 36 H 0.08 0.80 4.59 -51.93 -0.24 0.56 16 37 H 0.07 0.73 6.47 -51.93 -0.34 0.40 16 38 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 39 H 0.04 0.36 8.12 -51.93 -0.42 -0.07 16 40 H 0.07 0.89 6.55 -51.93 -0.34 0.55 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.40 4.07 8.47 -40.82 -0.35 3.73 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 44 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 386.91 15.07 5.83 5.83 Total: -1.00 -36.28 386.91 -8.83 -45.11 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.67 Total: 0.06 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.16 Total: -1.52 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.89 Total: -47.29 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.04 Total: -14.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.28 -8.83 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317439102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.597 kcal (2) G-P(sol) polarization free energy of solvation -36.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds