Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35676 * 117.00138 * 2 1 4 4 N 1.32278 * 119.68421 * 0.24937 * 3 2 1 5 5 C 1.31934 * 121.64825 * 180.29032 * 4 3 2 6 6 C 1.38081 * 120.83465 * 359.72165 * 5 4 3 7 7 C 1.38792 * 119.28901 * 0.02562 * 6 5 4 8 8 C 1.38423 * 118.48152 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.44244 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47033 * 260.00366 * 9 8 7 11 11 C 1.46900 * 110.99850 * 293.95020 * 10 9 8 12 12 C 1.46906 * 111.00051 * 170.00053 * 10 9 8 13 13 C 1.52993 * 109.47378 * 189.99991 * 12 10 9 14 14 N 1.46496 * 109.47551 * 180.02562 * 13 12 10 15 15 C 1.34777 * 120.00258 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.99757 * 179.97438 * 15 14 13 18 18 S 1.81003 * 109.46848 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99904 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99972 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99695 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00104 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99570 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47083 * 60.00261 * 23 21 19 25 25 H 1.48505 * 109.46589 * 179.97438 * 23 21 19 26 26 H 1.48491 * 109.47322 * 299.99919 * 23 21 19 27 27 H 1.09003 * 109.47271 * 299.99947 * 1 2 3 28 28 H 1.09000 * 109.47399 * 60.00144 * 1 2 3 29 29 H 1.09002 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.58302 * 179.74995 * 5 4 3 31 31 H 1.08006 * 120.36016 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.75952 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47644 * 140.00487 * 9 8 7 34 34 H 1.09000 * 109.47199 * 19.99764 * 9 8 7 35 35 H 1.08996 * 109.47030 * 296.04770 * 11 10 9 36 36 H 1.08999 * 109.46702 * 56.04909 * 11 10 9 37 37 H 1.08996 * 109.46890 * 176.04778 * 11 10 9 38 38 H 1.09004 * 109.47040 * 309.99779 * 12 10 9 39 39 H 1.09000 * 109.47033 * 69.99731 * 12 10 9 40 40 H 1.09004 * 109.46862 * 299.99897 * 13 12 10 41 41 H 1.09004 * 109.46998 * 59.99419 * 13 12 10 42 42 H 0.96999 * 119.99694 * 359.97438 * 14 13 12 43 43 H 1.08996 * 109.47390 * 299.99902 * 17 15 14 44 44 H 1.09004 * 109.47662 * 59.99777 * 17 15 14 45 45 H 0.97002 * 119.99547 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3143 0.0050 5 6 1.8768 3.5096 -0.0005 6 6 3.2505 3.6491 -0.0060 7 6 4.0483 2.5134 -0.0062 8 6 3.4322 1.2739 -0.0004 9 6 4.2557 0.0119 -0.0010 10 7 4.3158 -0.5329 -1.3639 11 6 2.9900 -0.9807 -1.8108 12 6 5.2969 -1.6228 -1.4525 13 6 5.5142 -1.9954 -2.9203 14 7 6.4921 -3.0826 -3.0087 15 6 6.8428 -3.5775 -4.2122 16 8 6.3483 -3.1232 -5.2222 17 6 7.8491 -4.6955 -4.3030 18 16 8.1061 -5.1364 -6.0396 19 6 9.2922 -6.4264 -5.8554 20 1 9.6321 -6.7109 -4.8706 21 6 9.7903 -7.0763 -6.9762 22 7 9.3764 -6.7292 -8.1766 23 14 11.0483 -8.4434 -6.7810 24 1 10.4678 -9.5368 -5.9608 25 1 11.4170 -8.9714 -8.1192 26 1 12.2594 -7.9093 -6.1081 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.2514 4.3902 -0.0002 31 1 3.6995 4.6315 -0.0101 32 1 5.1253 2.5949 -0.0109 33 1 3.7980 -0.7210 0.6634 34 1 5.2646 0.2362 0.3453 35 1 2.6540 -1.8053 -1.1822 36 1 2.2830 -0.1545 -1.7350 37 1 3.0493 -1.3142 -2.8468 38 1 6.2415 -1.2976 -1.0165 39 1 4.9254 -2.4911 -0.9084 40 1 4.5696 -2.3206 -3.3563 41 1 5.8856 -1.1269 -3.4645 42 1 6.8879 -3.4457 -2.2009 43 1 8.7936 -4.3705 -3.8666 44 1 7.4775 -5.5641 -3.7591 45 1 9.7243 -7.1836 -8.9598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317439102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = -52.083428 kcal Electronic energy + Delta-G solvation = -25837.157048 eV Core-core repulsion = 21980.741626 eV Total energy + Delta-G solvation = -3856.415422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81580 -40.63685 -38.84032 -38.67071 -35.84141 -34.57254 -33.80414 -32.15339 -31.36352 -29.15995 -28.70580 -27.87673 -27.63835 -25.57706 -23.87915 -22.98720 -22.06518 -21.63839 -19.81593 -19.29554 -18.15666 -17.87131 -17.65383 -17.25165 -16.86683 -16.81617 -16.55481 -16.09919 -16.01773 -15.67940 -15.32919 -15.15424 -14.90281 -14.69722 -14.43059 -14.35565 -14.21148 -13.81447 -13.55269 -13.15922 -13.02982 -12.95665 -12.85702 -12.81279 -12.66522 -12.59538 -12.34547 -12.13364 -11.83484 -11.73483 -11.11775 -11.00484 -10.75415 -10.57758 -10.26648 -10.11753 -9.51499 -9.24895 -8.65991 -8.33289 -6.11752 0.15439 0.36783 1.27357 1.45044 1.47522 1.57214 1.61807 2.16533 2.18727 2.28982 2.75986 3.00690 3.19105 3.35778 3.38839 3.78451 3.87638 3.93511 4.03740 4.08522 4.12911 4.29786 4.32260 4.39785 4.42055 4.43880 4.47210 4.52376 4.55545 4.65167 4.71421 4.77114 4.82838 4.88488 4.96217 5.11193 5.16379 5.33132 5.40191 5.42801 5.55360 5.97344 6.00213 6.20814 6.25551 6.51540 6.88753 7.07692 7.25482 8.75687 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031233 B = 0.001612 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.272881 B =17366.642050 C =17592.159849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.314 6.314 3 C 0.304 3.696 4 N -0.564 5.564 5 C 0.123 3.877 6 C -0.205 4.205 7 C -0.030 4.030 8 C -0.162 4.162 9 C 0.112 3.888 10 N -0.542 5.542 11 C 0.026 3.974 12 C 0.057 3.943 13 C 0.128 3.872 14 N -0.710 5.710 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.128 4.128 18 S -0.155 6.155 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.261 1.261 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.047 0.953 34 H 0.106 0.894 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.418 0.582 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 19.086 25.811 34.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.221 6.221 3 C 0.125 3.875 4 N -0.287 5.287 5 C -0.032 4.032 6 C -0.225 4.225 7 C -0.056 4.056 8 C -0.165 4.165 9 C -0.016 4.016 10 N -0.267 5.267 11 C -0.122 4.122 12 C -0.071 4.071 13 C 0.003 3.997 14 N -0.365 5.365 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.279 4.279 18 S 0.072 5.928 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.187 1.187 25 H -0.205 1.205 26 H -0.186 1.186 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.132 0.868 30 H 0.199 0.801 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.232 19.843 23.678 34.444 hybrid contribution 1.362 -1.828 1.453 2.703 sum -13.870 18.016 25.131 33.890 Atomic orbital electron populations 1.22948 0.76680 1.04143 1.02020 1.86377 1.23635 1.24603 1.87508 1.19876 0.89564 0.85003 0.93055 1.67340 1.41650 0.99579 1.20161 1.22937 0.94135 0.93654 0.92480 1.22349 0.94499 1.01020 1.04622 1.21731 1.02040 0.90215 0.91626 1.19963 0.90728 0.97517 1.08329 1.20827 1.00055 0.92200 0.88483 1.61912 1.07704 1.33045 1.24015 1.22579 0.90039 0.99990 0.99556 1.22168 0.97583 0.93434 0.93941 1.21209 0.91487 0.89074 0.97891 1.45600 1.45034 1.37933 1.07949 1.20089 0.81685 0.82805 0.83509 1.90698 1.55655 1.61211 1.37030 1.23363 1.01599 1.00022 1.02941 1.85622 1.56493 1.46671 1.03967 1.23183 1.28158 1.21666 0.96450 0.89764 1.26148 0.99035 1.00132 0.93907 1.70186 1.43616 1.42193 0.98812 0.84992 0.77809 0.77355 0.77759 1.18652 1.20468 1.18583 0.92511 0.92886 0.86751 0.80127 0.81636 0.81847 0.93499 0.87558 0.94807 0.91162 0.92729 0.87805 0.92813 0.93110 0.92346 0.74485 0.86921 0.87064 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 113.37 1.18 1.67 16 2 O -0.31 -5.64 6.59 -89.94 -0.59 -6.23 16 3 C 0.30 5.67 6.24 84.78 0.53 6.20 16 4 N -0.56 -10.27 9.22 -308.94 -2.85 -13.12 16 5 C 0.12 1.57 11.18 84.64 0.95 2.51 16 6 C -0.21 -2.05 10.11 22.36 0.23 -1.82 16 7 C -0.03 -0.36 9.81 22.45 0.22 -0.14 16 8 C -0.16 -2.57 5.19 -19.67 -0.10 -2.67 16 9 C 0.11 1.57 5.00 85.55 0.43 2.00 16 10 N -0.54 -9.50 4.75 -927.06 -4.41 -13.91 16 11 C 0.03 0.52 7.87 127.69 1.01 1.52 16 12 C 0.06 0.89 5.07 86.30 0.44 1.32 16 13 C 0.13 3.01 5.60 86.38 0.48 3.50 16 14 N -0.71 -17.83 5.56 -463.08 -2.57 -20.41 16 15 C 0.53 19.92 7.85 87.66 0.69 20.60 16 16 O -0.57 -27.09 15.86 -3.03 -0.05 -27.14 16 17 C -0.13 -5.05 6.16 71.23 0.44 -4.61 16 18 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 19 C -0.55 -31.26 9.50 67.96 0.65 -30.62 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 23 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 27 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 28 H 0.05 0.76 8.11 -2.39 -0.02 0.74 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 32 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 33 H 0.05 0.69 7.86 -2.39 -0.02 0.67 16 34 H 0.11 1.02 7.82 -2.39 -0.02 1.00 16 35 H 0.03 0.63 7.93 -2.39 -0.02 0.61 16 36 H 0.07 1.49 4.59 -2.39 -0.01 1.48 16 37 H 0.05 1.20 6.47 -2.39 -0.02 1.18 16 38 H 0.10 1.20 7.93 -2.38 -0.02 1.18 16 39 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 40 H 0.05 1.38 6.55 -2.38 -0.02 1.37 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.42 7.11 8.47 -92.71 -0.79 6.33 16 43 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 44 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 45 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -81.77 386.91 -1.51 -83.28 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.22 Total: 17.16 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 7.59 Total: 0.65 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -9.54 Total: -103.48 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.64 Total: -33.37 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -81.77 -1.51 -83.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317439102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.198 kcal (2) G-P(sol) polarization free energy of solvation -81.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds