Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36947 * 119.99865 * 2 1 4 4 H 1.08002 * 119.99783 * 204.70795 * 3 2 1 5 5 C 1.38809 * 119.99809 * 24.70229 * 3 2 1 6 6 N 1.31620 * 120.00225 * 6.54144 * 5 3 2 7 7 Si 1.86796 * 119.99754 * 186.53147 * 5 3 2 8 8 H 1.48499 * 109.46941 * 60.00557 * 7 5 3 9 9 H 1.48503 * 109.47314 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47583 * 300.00540 * 7 5 3 11 11 C 1.46502 * 120.00425 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47108 * 270.00484 * 11 2 1 13 13 N 1.46501 * 109.47200 * 179.97438 * 12 11 2 14 14 C 1.46494 * 120.00206 * 270.00139 * 13 12 11 15 15 C 1.34773 * 119.99863 * 90.00016 * 13 12 11 16 16 O 1.21281 * 120.00250 * 0.02562 * 15 13 12 17 17 C 1.50697 * 120.00060 * 180.02562 * 15 13 12 18 18 N 1.46504 * 109.47420 * 180.02562 * 17 15 13 19 19 C 1.46508 * 119.99745 * 270.00142 * 18 17 15 20 20 C 1.34767 * 120.00158 * 89.99448 * 18 17 15 21 21 O 1.21697 * 120.00408 * 359.95246 * 20 18 17 22 22 C 1.46588 * 119.99954 * 179.97438 * 20 18 17 23 23 C 1.36655 * 125.45791 * 171.76015 * 22 20 18 24 24 C 1.37469 * 113.29838 * 179.97438 * 23 22 20 25 25 C 1.33818 * 115.10041 * 0.02562 * 24 23 22 26 26 S 1.70622 * 110.95413 * 359.97438 * 25 24 23 27 27 H 1.08991 * 109.47315 * 275.03556 * 1 2 3 28 28 H 1.08997 * 109.46968 * 35.04313 * 1 2 3 29 29 H 1.09002 * 109.46762 * 155.03217 * 1 2 3 30 30 H 0.97000 * 119.99669 * 179.97438 * 6 5 3 31 31 H 1.09001 * 109.47383 * 150.00561 * 11 2 1 32 32 H 1.08998 * 109.46582 * 30.00115 * 11 2 1 33 33 H 1.09004 * 109.47371 * 59.99535 * 12 11 2 34 34 H 1.08998 * 109.47688 * 299.99794 * 12 11 2 35 35 H 1.09001 * 109.47067 * 269.99761 * 14 13 12 36 36 H 1.09007 * 109.47097 * 29.99889 * 14 13 12 37 37 H 1.09002 * 109.47292 * 149.99796 * 14 13 12 38 38 H 1.09004 * 109.47392 * 60.00046 * 17 15 13 39 39 H 1.09000 * 109.47058 * 299.99593 * 17 15 13 40 40 H 1.09000 * 109.46836 * 263.40006 * 19 18 17 41 41 H 1.08994 * 109.46873 * 23.39673 * 19 18 17 42 42 H 1.09001 * 109.47203 * 143.39912 * 19 18 17 43 43 H 1.07996 * 123.35065 * 0.25669 * 23 22 20 44 44 H 1.07997 * 122.44971 * 180.02562 * 24 23 22 45 45 H 1.07995 * 124.52505 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1556 1.2288 -0.3910 5 6 1.5509 2.3331 0.5024 6 7 0.3781 2.2577 1.0952 7 14 2.4095 3.9838 0.3374 8 1 2.6215 4.2899 -1.1002 9 1 1.5684 5.0428 0.9507 10 1 3.7216 3.9308 1.0309 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1846 -2.9787 1.4438 14 6 2.4517 -4.2472 1.4445 15 6 4.5323 -2.9792 1.4438 16 8 5.1391 -1.9291 1.4437 17 6 5.2854 -4.2845 1.4438 18 7 6.7259 -4.0173 1.4443 19 6 7.4465 -3.8835 0.1758 20 6 7.3880 -3.8945 2.6117 21 8 6.7893 -4.0047 3.6654 22 6 8.8294 -3.6277 2.6122 23 6 9.5795 -3.3264 3.7140 24 6 10.9087 -3.1233 3.4280 25 6 11.2378 -3.2526 2.1374 26 16 9.8703 -3.6445 1.1952 27 1 -0.3633 0.0902 1.0236 28 1 -0.3633 0.8414 -0.5901 29 1 -0.3633 -0.9317 -0.4338 30 1 -0.0401 3.0592 1.4465 31 1 3.1501 -1.1385 -0.5132 32 1 1.6085 -2.0285 -0.5129 33 1 1.5001 -1.8399 1.9571 34 1 3.0415 -0.9499 1.9569 35 1 2.2700 -4.5613 2.4723 36 1 1.4993 -4.1168 0.9306 37 1 3.0405 -5.0073 0.9309 38 1 5.0219 -4.8561 0.5538 39 1 5.0220 -4.8559 2.3339 40 1 7.9119 -4.8354 -0.0798 41 1 6.7478 -3.5979 -0.6105 42 1 8.2159 -3.1176 0.2740 43 1 9.1697 -3.2594 4.7110 44 1 11.6342 -2.8773 4.1892 45 1 12.2359 -3.1267 1.7447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320006847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = 14.883953 kcal Electronic energy + Delta-G solvation = -27285.304255 eV Core-core repulsion = 23431.792757 eV Total energy + Delta-G solvation = -3853.511498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43253 -39.13191 -37.66228 -36.12376 -35.49336 -34.81588 -31.59281 -30.74056 -29.20741 -28.02484 -26.94207 -26.24460 -25.79634 -24.71988 -23.25731 -21.36353 -20.42310 -19.31333 -18.96082 -18.23332 -17.18209 -16.74414 -16.57353 -16.08848 -15.80704 -15.40085 -15.31966 -14.74726 -14.59101 -13.70583 -13.63024 -13.44949 -13.37746 -13.32573 -13.09689 -12.98750 -12.89773 -12.79117 -12.52774 -12.36769 -12.29189 -11.96618 -11.79735 -11.23574 -10.83108 -10.80260 -10.78978 -10.48139 -10.21590 -10.11787 -9.94319 -9.86380 -9.72644 -9.14916 -8.87327 -8.62925 -8.56134 -8.33225 -6.68392 -5.67454 -3.15394 0.31249 1.25881 1.69641 2.18987 2.54492 2.87861 3.07208 3.38737 3.46262 3.48950 3.51862 4.28994 4.56189 4.63664 4.70970 4.75826 4.87836 5.05822 5.07763 5.17292 5.24233 5.27278 5.37691 5.43575 5.52030 5.68898 5.72019 5.72425 5.83834 5.92863 6.06742 6.11252 6.28173 6.31837 6.63881 6.75864 6.82055 7.02652 7.08294 7.42164 7.68609 7.77576 7.88360 7.92120 8.45085 8.49524 9.30421 9.91103 10.39751 11.37547 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.002812 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.367274 B = 9954.961195 C =11251.652430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.600 5.600 3 C -0.252 4.252 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.912 5.912 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.146 3.854 12 C 0.094 3.906 13 N -0.612 5.612 14 C 0.077 3.923 15 C 0.489 3.511 16 O -0.522 6.522 17 C 0.100 3.900 18 N -0.595 5.595 19 C 0.067 3.933 20 C 0.597 3.403 21 O -0.525 6.525 22 C -0.265 4.265 23 C -0.054 4.054 24 C -0.151 4.151 25 C -0.260 4.260 26 S 0.226 5.774 27 H 0.029 0.971 28 H 0.045 0.955 29 H -0.006 1.006 30 H 0.253 0.747 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.152 0.848 44 H 0.141 0.859 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.650 -19.952 -1.434 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.323 5.323 3 C -0.382 4.382 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.557 5.557 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.018 3.982 12 C -0.031 4.031 13 N -0.347 5.347 14 C -0.067 4.067 15 C 0.274 3.726 16 O -0.397 6.397 17 C -0.026 4.026 18 N -0.327 5.327 19 C -0.078 4.078 20 C 0.385 3.615 21 O -0.403 6.403 22 C -0.385 4.385 23 C -0.087 4.087 24 C -0.181 4.181 25 C -0.396 4.396 26 S 0.494 5.506 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.013 0.987 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.170 0.830 44 H 0.158 0.842 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 16.339 -19.548 -2.362 25.587 hybrid contribution 0.722 1.341 1.599 2.208 sum 17.061 -18.207 -0.764 24.963 Atomic orbital electron populations 1.20835 0.82363 0.95352 0.99439 1.43939 1.01940 1.00576 1.85839 1.19202 0.99148 0.85786 1.34026 0.91419 1.25099 0.97411 0.98765 0.98212 1.70033 1.16476 1.27638 1.41573 0.86306 0.78914 0.83464 0.77719 1.21032 1.21603 1.20826 1.21091 0.95882 0.88159 0.93110 1.22618 0.95411 0.83209 1.01821 1.48090 1.05437 1.08045 1.73164 1.21791 0.97783 0.85423 1.01665 1.20973 0.82646 0.91574 0.77379 1.90750 1.67453 1.33072 1.48456 1.21433 0.79756 0.95948 1.05457 1.47156 1.07719 1.71652 1.06184 1.22047 0.97656 1.01940 0.86148 1.16943 0.84899 0.76179 0.83485 1.90830 1.68316 1.50499 1.30645 1.24513 0.97515 1.18047 0.98400 1.20789 0.92587 0.95991 0.99366 1.20006 0.96270 1.05301 0.96550 1.25903 1.06026 1.08150 0.99565 1.83506 0.94562 1.64424 1.08088 0.95223 0.93627 0.98720 0.93728 0.93734 0.94744 0.91455 0.89787 0.92694 0.90664 0.91657 0.87314 0.86819 0.91230 0.88808 0.90351 0.83006 0.84170 0.81875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.11 9.00 59.85 0.54 4.65 16 2 N -0.60 -15.64 2.92 -181.12 -0.53 -16.17 16 3 C -0.25 -7.27 9.67 -15.06 -0.15 -7.42 16 4 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 5 C 0.00 0.09 5.22 -17.43 -0.09 0.00 16 6 N -0.91 -27.20 10.48 55.49 0.58 -26.61 16 7 Si 0.91 22.89 29.56 -169.99 -5.02 17.86 16 8 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 11 C 0.15 3.14 6.03 -4.04 -0.02 3.11 16 12 C 0.09 1.88 5.73 -4.04 -0.02 1.86 16 13 N -0.61 -9.64 2.87 -181.57 -0.52 -10.16 16 14 C 0.08 0.80 10.24 59.84 0.61 1.41 16 15 C 0.49 8.15 7.74 -10.99 -0.09 8.06 16 16 O -0.52 -11.32 16.01 5.56 0.09 -11.23 16 17 C 0.10 1.18 4.41 -5.19 -0.02 1.16 16 18 N -0.60 -7.43 2.36 -184.54 -0.44 -7.86 16 19 C 0.07 0.60 8.92 59.85 0.53 1.13 16 20 C 0.60 8.83 7.64 -12.90 -0.10 8.73 16 21 O -0.53 -9.48 16.43 5.19 0.09 -9.40 16 22 C -0.26 -3.26 6.24 -36.79 -0.23 -3.49 16 23 C -0.05 -0.62 10.02 -40.43 -0.41 -1.02 16 24 C -0.15 -1.38 10.15 -41.41 -0.42 -1.80 16 25 C -0.26 -2.11 10.92 29.18 0.32 -1.79 16 26 S 0.23 1.91 17.89 -107.50 -1.92 -0.01 16 27 H 0.03 0.79 7.34 -51.93 -0.38 0.41 16 28 H 0.04 1.22 7.27 -51.93 -0.38 0.84 16 29 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.04 1.01 8.04 -51.93 -0.42 0.59 16 32 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 33 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 34 H 0.08 2.05 7.42 -51.93 -0.39 1.67 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.06 0.46 6.44 -51.93 -0.33 0.13 16 38 H 0.11 0.82 7.33 -51.93 -0.38 0.44 16 39 H 0.11 1.29 7.38 -51.93 -0.38 0.91 16 40 H 0.07 0.41 7.76 -51.93 -0.40 0.01 16 41 H 0.09 0.77 8.02 -51.93 -0.42 0.36 16 42 H 0.08 0.74 4.62 -23.22 -0.11 0.64 16 43 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -37.66 383.70 -7.92 -45.58 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.48 Total: -2.36 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 0.46 Total: 14.57 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.91 Total: -60.80 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.17 Total: -20.62 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.92 Total: -0.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.66 -7.92 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320006847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.462 kcal (2) G-P(sol) polarization free energy of solvation -37.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds