Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36935 * 119.99691 * 2 1 4 4 H 1.07999 * 120.00259 * 322.76213 * 3 2 1 5 5 C 1.38816 * 119.99933 * 142.76428 * 3 2 1 6 6 N 1.31622 * 120.00185 * 156.55727 * 5 3 2 7 7 Si 1.86800 * 119.99768 * 336.55516 * 5 3 2 8 8 H 1.48498 * 109.47423 * 92.38792 * 7 5 3 9 9 H 1.48500 * 109.46843 * 212.38634 * 7 5 3 10 10 H 1.48502 * 109.47363 * 332.38365 * 7 5 3 11 11 C 1.46498 * 120.00181 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47276 * 89.99973 * 11 2 1 13 13 H 1.08997 * 109.46996 * 59.99959 * 12 11 2 14 14 O 1.42898 * 109.47137 * 299.99797 * 12 11 2 15 15 C 1.53004 * 109.47101 * 179.97438 * 12 11 2 16 16 N 1.46501 * 109.46890 * 184.99961 * 15 12 11 17 17 C 1.46503 * 120.00168 * 269.99706 * 16 15 12 18 18 C 1.34781 * 120.00052 * 89.99960 * 16 15 12 19 19 O 1.21634 * 119.99546 * 5.13586 * 18 16 15 20 20 C 1.47264 * 120.00207 * 185.12559 * 18 16 15 21 21 N 1.33571 * 123.13938 * 4.92018 * 20 18 16 22 22 C 1.28645 * 115.76219 * 179.97438 * 21 20 18 23 23 S 1.70769 * 110.56241 * 0.02562 * 22 21 20 24 24 C 1.35202 * 123.14314 * 184.61651 * 20 18 16 25 25 C 1.50696 * 125.58668 * 0.03596 * 24 20 18 26 26 C 1.53001 * 117.50444 * 188.74401 * 25 24 20 27 27 C 1.53000 * 117.50245 * 120.08252 * 25 24 20 28 28 H 1.08998 * 109.47162 * 265.77704 * 1 2 3 29 29 H 1.08993 * 109.47611 * 25.77961 * 1 2 3 30 30 H 1.09010 * 109.47022 * 145.78075 * 1 2 3 31 31 H 0.97001 * 119.99921 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47141 * 330.00021 * 11 2 1 33 33 H 1.08996 * 109.47142 * 210.00323 * 11 2 1 34 34 H 0.96700 * 114.00258 * 299.99758 * 14 12 11 35 35 H 1.09000 * 109.47554 * 304.99750 * 15 12 11 36 36 H 1.09000 * 109.47052 * 65.00403 * 15 12 11 37 37 H 1.09008 * 109.46810 * 96.02432 * 17 16 15 38 38 H 1.09001 * 109.47380 * 216.01845 * 17 16 15 39 39 H 1.08991 * 109.47139 * 336.02873 * 17 16 15 40 40 H 1.07997 * 124.71565 * 179.97438 * 22 21 20 41 41 H 1.09009 * 115.54987 * 334.41464 * 25 24 20 42 42 H 1.08998 * 117.49095 * 359.97438 * 26 25 24 43 43 H 1.08995 * 117.50598 * 145.01758 * 26 25 24 44 44 H 1.09000 * 117.49766 * 214.98170 * 27 25 24 45 45 H 1.08997 * 117.49926 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7747 2.0259 -0.5660 5 6 3.3255 1.3085 0.7274 6 7 4.2129 2.2219 0.3949 7 14 3.6484 0.1771 2.1783 8 1 4.4086 -1.0128 1.7187 9 1 4.4382 0.9026 3.2055 10 1 2.3551 -0.2578 2.7644 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4432 13 1 3.0416 -0.9498 -1.9567 14 8 1.2039 -1.8804 -2.1169 15 6 3.2181 -3.0344 -1.4437 16 7 3.5665 -3.3965 -2.8199 17 6 2.6465 -4.2100 -3.6187 18 6 4.7336 -2.9812 -3.3511 19 8 5.5386 -2.3861 -2.6603 20 6 5.0340 -3.2481 -4.7679 21 7 4.1595 -3.8101 -5.6065 22 6 4.5708 -3.9774 -6.8139 23 16 6.1720 -3.4093 -6.9862 24 6 6.2188 -2.9417 -5.3427 25 6 7.3902 -2.2970 -4.6474 26 6 8.5660 -1.8452 -5.5158 27 6 8.7075 -3.0744 -4.6147 28 1 -0.3633 -0.0757 1.0249 29 1 -0.3634 0.9253 -0.4469 30 1 -0.3633 -0.8498 -0.5780 31 1 5.0345 2.3078 0.9035 32 1 1.6085 -2.0286 0.5129 33 1 3.1499 -1.1386 0.5134 34 1 0.6268 -2.5433 -1.7137 35 1 4.1289 -2.9280 -0.8544 36 1 2.5936 -3.8152 -1.0097 37 1 2.0305 -3.5586 -4.2388 38 1 3.2179 -4.8846 -4.2563 39 1 2.0065 -4.7917 -2.9554 40 1 3.9852 -4.4168 -7.6079 41 1 7.1435 -1.6879 -3.7777 42 1 8.4924 -2.0146 -6.5901 43 1 9.0932 -0.9391 -5.2175 44 1 9.3277 -2.9764 -3.7237 45 1 8.7269 -4.0523 -5.0957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332662759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = 35.844943 kcal Electronic energy + Delta-G solvation = -28126.383276 eV Core-core repulsion = 24273.780715 eV Total energy + Delta-G solvation = -3852.602561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77235 -38.80775 -37.51829 -37.27032 -35.28328 -34.44587 -31.49838 -30.79197 -30.12046 -27.15441 -26.60102 -25.92558 -24.96164 -22.72384 -22.45365 -22.18449 -21.24544 -20.80248 -18.99694 -18.23403 -16.99341 -16.65494 -16.14158 -15.94701 -15.70437 -15.38350 -15.13535 -14.80464 -14.52247 -14.33037 -14.24964 -13.58161 -13.39210 -13.31572 -12.72739 -12.62372 -12.50397 -12.34188 -12.22523 -12.01400 -11.82513 -11.78728 -11.37688 -11.25828 -11.21226 -10.79852 -10.75209 -10.55763 -10.36012 -10.08852 -9.87622 -9.72896 -9.53510 -9.52126 -9.48204 -9.00836 -8.46703 -8.23832 -6.69841 -5.93679 -3.32237 0.33367 0.99278 1.41626 1.92215 3.15424 3.33794 3.39695 3.49294 3.54495 3.73395 3.95728 4.29494 4.57260 4.60459 4.76595 4.79324 4.87806 5.01600 5.09830 5.27991 5.36318 5.39326 5.41951 5.43532 5.57969 5.62506 5.69260 5.87417 5.89188 5.94028 5.99901 6.01624 6.16330 6.19061 6.40307 6.49295 6.66834 6.77332 6.81780 6.90715 7.21450 7.54151 8.10073 8.22208 8.32063 8.45349 9.04969 9.77617 10.18813 11.22346 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.003633 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.741122 B = 7705.883823 C = 8927.623422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.601 5.601 3 C -0.270 4.270 4 H 0.077 0.923 5 C 0.037 3.963 6 N -0.896 5.896 7 Si 0.874 3.126 8 H -0.283 1.283 9 H -0.300 1.300 10 H -0.271 1.271 11 C 0.110 3.890 12 C 0.077 3.923 13 H 0.106 0.894 14 O -0.548 6.548 15 C 0.081 3.919 16 N -0.591 5.591 17 C 0.095 3.905 18 C 0.589 3.411 19 O -0.524 6.524 20 C 0.004 3.996 21 N -0.427 5.427 22 C -0.014 4.014 23 S 0.192 5.808 24 C -0.144 4.144 25 C -0.091 4.091 26 C -0.175 4.175 27 C -0.160 4.160 28 H 0.001 0.999 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.354 0.646 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.204 0.796 41 H 0.153 0.847 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -17.987 -15.559 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.325 5.325 3 C -0.399 4.399 4 H 0.095 0.905 5 C -0.164 4.164 6 N -0.537 5.537 7 Si 0.704 3.296 8 H -0.211 1.211 9 H -0.228 1.228 10 H -0.196 1.196 11 C -0.017 4.017 12 C 0.014 3.986 13 H 0.124 0.876 14 O -0.351 6.351 15 C -0.042 4.042 16 N -0.322 5.322 17 C -0.048 4.048 18 C 0.374 3.626 19 O -0.400 6.400 20 C -0.130 4.130 21 N -0.141 5.141 22 C -0.313 4.313 23 S 0.449 5.551 24 C -0.267 4.267 25 C -0.111 4.111 26 C -0.213 4.213 27 C -0.198 4.198 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.199 0.801 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.220 0.780 41 H 0.171 0.829 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.729 -17.250 -16.223 24.148 hybrid contribution -0.358 -0.883 1.967 2.185 sum 4.371 -18.133 -14.256 23.477 Atomic orbital electron populations 1.21059 0.84239 0.99424 0.96781 1.43826 1.00848 1.01479 1.86298 1.18801 1.05764 0.90571 1.24745 0.90529 1.25451 0.96680 0.96474 0.97808 1.69891 1.07988 1.36399 1.39413 0.87017 0.77784 0.80183 0.84618 1.21084 1.22804 1.19609 1.21800 0.97401 0.88817 0.93679 1.23137 0.84169 0.94624 0.96652 0.87650 1.86664 1.29178 1.62873 1.56357 1.22439 1.01581 0.98135 0.82054 1.47512 1.18505 1.51918 1.14266 1.21974 0.93166 0.94799 0.94880 1.17048 0.81789 0.79307 0.84430 1.90792 1.47385 1.41548 1.60302 1.20331 0.90541 1.05603 0.96542 1.67352 1.31877 1.13303 1.01548 1.28429 0.98176 1.06356 0.98366 1.82726 1.13930 1.52717 1.05756 1.24802 0.99670 1.04084 0.98194 1.20815 0.84759 1.03404 1.02134 1.23161 1.01393 0.99573 0.97184 1.23078 0.98281 0.96016 1.02463 0.98047 0.93885 0.94943 0.92713 0.94143 0.91796 0.80079 0.89006 0.90568 0.91925 0.89977 0.92500 0.77952 0.82915 0.88761 0.87423 0.87627 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.73 10.48 59.85 0.63 3.36 16 2 N -0.60 -14.97 2.40 -181.13 -0.44 -15.41 16 3 C -0.27 -7.95 9.89 -15.06 -0.15 -8.10 16 4 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 5 C 0.04 1.10 5.29 -17.43 -0.09 1.00 16 6 N -0.90 -28.39 13.97 55.49 0.78 -27.61 16 7 Si 0.87 22.85 25.23 -169.99 -4.29 18.56 16 8 H -0.28 -7.14 6.52 56.52 0.37 -6.77 16 9 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 10 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.11 2.42 4.23 -4.05 -0.02 2.40 16 12 C 0.08 1.53 3.48 -26.73 -0.09 1.44 16 13 H 0.11 2.64 8.14 -51.93 -0.42 2.22 16 14 O -0.55 -9.85 11.55 -35.23 -0.41 -10.26 16 15 C 0.08 1.36 5.15 -4.04 -0.02 1.34 16 16 N -0.59 -9.55 2.84 -182.90 -0.52 -10.07 16 17 C 0.09 1.21 8.84 59.85 0.53 1.74 16 18 C 0.59 10.59 7.64 -12.59 -0.10 10.49 16 19 O -0.52 -10.95 13.70 5.25 0.07 -10.87 16 20 C 0.00 0.06 6.45 -84.52 -0.54 -0.49 16 21 N -0.43 -5.41 6.92 -12.36 -0.09 -5.49 16 22 C -0.01 -0.13 12.17 51.43 0.63 0.50 16 23 S 0.19 1.68 21.77 -107.50 -2.34 -0.66 16 24 C -0.14 -1.88 6.04 -35.39 -0.21 -2.10 16 25 C -0.09 -1.19 5.45 -91.77 -0.50 -1.69 16 26 C -0.18 -1.73 10.04 -26.69 -0.27 -2.00 16 27 C -0.16 -1.64 10.24 -26.69 -0.27 -1.91 16 28 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 29 H 0.04 0.91 8.01 -51.93 -0.42 0.49 16 30 H 0.03 0.58 6.82 -51.92 -0.35 0.23 16 31 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 32 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.06 1.56 3.23 -51.93 -0.17 1.40 16 34 H 0.35 4.83 8.81 45.56 0.40 5.23 16 35 H 0.09 1.70 7.36 -51.93 -0.38 1.32 16 36 H 0.08 1.00 7.85 -51.93 -0.41 0.59 16 37 H 0.06 0.87 8.07 -51.92 -0.42 0.45 16 38 H 0.08 1.00 5.83 -51.93 -0.30 0.70 16 39 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 40 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.15 2.52 6.09 -51.92 -0.32 2.20 16 42 H 0.09 0.79 7.28 -51.93 -0.38 0.41 16 43 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -36.11 374.85 -7.76 -43.87 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.70 Total: 6.32 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -0.49 Total: 5.98 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.26 Total: -58.58 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.34 Total: -21.14 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.29 Total: 18.56 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.34 Total: -0.66 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.11 -7.76 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332662759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.716 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds