Wall clock time and date at job start Sat Apr 11 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47446 * 2 1 4 4 C 1.35525 * 125.67997 * 265.42252 * 3 2 1 5 5 C 1.35457 * 108.87525 * 179.97438 * 4 3 2 6 6 C 1.39838 * 107.85976 * 0.02562 * 5 4 3 7 7 C 1.37650 * 125.67450 * 85.39670 * 3 2 1 8 8 C 1.46678 * 126.23901 * 359.75424 * 7 3 2 9 9 O 1.21695 * 119.99395 * 355.03244 * 8 7 3 10 10 N 1.34771 * 120.00537 * 175.03156 * 8 7 3 11 11 C 1.46502 * 120.00101 * 185.01719 * 10 8 7 12 12 C 1.53000 * 109.46950 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47240 * 179.97438 * 12 11 10 14 14 N 1.46497 * 109.47273 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99975 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99732 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00173 * 180.02562 * 15 14 13 18 18 S 1.80994 * 109.47422 * 179.97438 * 17 15 14 19 19 C 1.76200 * 100.00164 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00046 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99860 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99923 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 120.00339 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47325 * 89.99703 * 23 21 19 25 25 H 1.48495 * 109.47001 * 210.00092 * 23 21 19 26 26 H 1.48501 * 109.46944 * 329.99911 * 23 21 19 27 27 H 1.09002 * 109.46786 * 300.00015 * 1 2 3 28 28 H 1.09002 * 109.46416 * 59.99809 * 1 2 3 29 29 H 1.09002 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47223 * 239.99824 * 2 1 3 31 31 H 1.09007 * 109.46855 * 120.00354 * 2 1 3 32 32 H 1.08007 * 125.56693 * 359.97438 * 4 3 2 33 33 H 1.07997 * 126.06745 * 180.02562 * 5 4 3 34 34 H 1.08003 * 126.45022 * 180.02562 * 6 5 4 35 35 H 0.97004 * 119.99713 * 5.02219 * 10 8 7 36 36 H 1.08994 * 109.46750 * 299.99937 * 11 10 8 37 37 H 1.08995 * 109.47042 * 60.00373 * 11 10 8 38 38 H 1.09000 * 109.47372 * 299.99862 * 12 11 10 39 39 H 1.09000 * 109.47337 * 59.99809 * 12 11 10 40 40 H 1.09000 * 109.46912 * 300.00250 * 13 12 11 41 41 H 1.09000 * 109.47026 * 59.99724 * 13 12 11 42 42 H 0.96995 * 119.99900 * 359.97438 * 14 13 12 43 43 H 1.09008 * 109.46440 * 299.99497 * 17 15 14 44 44 H 1.09000 * 109.47434 * 59.99300 * 17 15 14 45 45 H 0.97009 * 120.00019 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3648 2.0971 -1.0973 5 6 2.7671 3.3303 -0.7070 6 6 2.6707 3.3917 0.6867 7 6 2.2015 2.1679 1.1146 8 6 1.9394 1.7776 2.5040 9 8 1.4344 0.6975 2.7475 10 7 2.2577 2.6150 3.5108 11 6 2.0985 2.1825 4.9014 12 6 2.5265 3.3131 5.8393 13 6 2.3596 2.8618 7.2916 14 7 2.7699 3.9440 8.1896 15 6 2.7085 3.7716 9.5249 16 8 2.3131 2.7205 9.9830 17 6 3.1301 4.8851 10.4487 18 16 2.9328 4.3511 12.1668 19 6 3.4819 5.8015 13.0030 20 1 3.8047 6.6621 12.4361 21 6 3.4986 5.8383 14.3904 22 7 3.9093 6.9216 15.0151 23 14 2.9395 4.3499 15.3711 24 1 4.1014 3.4616 15.6283 25 1 2.3627 4.7974 16.6642 26 1 1.9100 3.6075 14.6003 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3264 1.7424 -2.1168 33 1 3.1027 4.1249 -1.3568 34 1 2.9165 4.2386 1.3102 35 1 2.5923 3.5042 3.3146 36 1 1.0538 1.9330 5.0869 37 1 2.7194 1.3052 5.0824 38 1 3.5711 3.5632 5.6539 39 1 1.9053 4.1903 5.6581 40 1 1.3148 2.6120 7.4767 41 1 2.9805 1.9844 7.4731 42 1 3.0865 4.7845 7.8232 43 1 4.1748 5.1350 10.2632 44 1 2.5089 5.7623 10.2676 45 1 3.9206 6.9475 15.9848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349725434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:56 Heat of formation + Delta-G solvation = -36.783354 kcal Electronic energy + Delta-G solvation = -25033.101411 eV Core-core repulsion = 21177.349451 eV Total energy + Delta-G solvation = -3855.751961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.85111 -39.58750 -39.22469 -36.41452 -34.92914 -34.26705 -32.44638 -31.92546 -29.98929 -29.76120 -28.95512 -25.76646 -25.44528 -24.04356 -22.74259 -22.17039 -20.97608 -20.48289 -19.83121 -18.30813 -17.83577 -16.63128 -16.44114 -16.42847 -16.11991 -15.72262 -15.52504 -15.10102 -14.96817 -14.83066 -14.38590 -14.23415 -14.10071 -13.79598 -13.28113 -13.14787 -12.97441 -12.80948 -12.78493 -12.66286 -12.47206 -12.36960 -12.09411 -11.98779 -11.66950 -11.39724 -11.27040 -11.01070 -10.62252 -10.39296 -9.86394 -9.56425 -9.55823 -9.20502 -9.04932 -8.98898 -8.65278 -8.50950 -6.92697 -6.29558 -4.01469 1.05093 2.15610 2.30887 2.71175 2.91200 2.95010 2.99755 3.31161 3.34554 3.50553 3.64527 4.23416 4.27109 4.32813 4.52236 4.54530 4.56999 4.57981 4.60700 4.77229 4.80654 4.89686 4.92951 5.09624 5.15447 5.21649 5.24838 5.28293 5.31855 5.47569 5.60897 5.65452 5.69714 5.74571 5.77419 5.80311 5.94982 5.99552 6.30478 6.46837 6.55326 6.76529 7.05295 7.56155 7.77606 7.93420 8.40781 8.45893 9.16700 10.79612 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.036043 B = 0.001418 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.673973 B =19745.189376 C =20412.675097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.406 5.406 4 C 0.015 3.985 5 C -0.208 4.208 6 C -0.141 4.141 7 C -0.053 4.053 8 C 0.588 3.412 9 O -0.545 6.545 10 N -0.719 5.719 11 C 0.126 3.874 12 C -0.144 4.144 13 C 0.125 3.875 14 N -0.738 5.738 15 C 0.530 3.470 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.168 0.832 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.403 0.597 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 -8.281 -36.162 37.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.079 5.079 4 C -0.120 4.120 5 C -0.232 4.232 6 C -0.168 4.168 7 C -0.167 4.167 8 C 0.376 3.624 9 O -0.424 6.424 10 N -0.371 5.371 11 C 0.002 3.998 12 C -0.182 4.182 13 C 0.000 4.000 14 N -0.392 5.392 15 C 0.316 3.684 16 O -0.393 6.393 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.185 0.815 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.238 0.762 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.118 -11.134 -34.986 36.945 hybrid contribution 0.699 1.751 -0.305 1.910 sum -3.420 -9.383 -35.291 36.677 Atomic orbital electron populations 1.22069 0.93826 1.03196 1.02944 1.22045 0.96192 0.79423 1.04792 1.44098 1.46899 1.11786 1.05163 1.22051 1.05244 0.93034 0.91682 1.20839 1.09679 0.97506 0.95136 1.21358 1.03942 0.95820 0.95683 1.20022 1.15400 0.93466 0.87801 1.16982 0.77861 0.84045 0.83512 1.90814 1.43811 1.22762 1.85046 1.45592 1.67681 1.18044 1.05777 1.21246 1.02549 0.97230 0.78803 1.21982 1.03086 0.98920 0.94193 1.21105 1.01233 0.90687 0.86972 1.45917 1.69370 1.18026 1.05928 1.20291 0.77183 0.88924 0.81998 1.90710 1.44804 1.27923 1.75829 1.23277 1.04947 0.99740 0.99517 1.84808 1.86935 1.24577 0.95251 1.22316 1.50344 0.99781 0.94528 0.89380 1.24709 0.93578 0.96226 0.96746 1.69940 1.45022 1.27372 1.09344 0.86735 0.81155 0.83243 0.80729 1.19199 1.19926 1.15921 0.91289 0.92406 0.90633 0.89348 0.87816 0.81494 0.83966 0.83918 0.76154 0.90662 0.90779 0.90287 0.90287 0.91162 0.91187 0.76619 0.88463 0.88418 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 10.17 37.16 0.38 -0.62 16 2 C 0.10 0.61 6.10 -4.04 -0.02 0.58 16 3 N -0.41 -3.10 2.76 -112.87 -0.31 -3.41 16 4 C 0.02 0.09 11.37 -16.91 -0.19 -0.10 16 5 C -0.21 -1.31 10.81 -39.98 -0.43 -1.74 16 6 C -0.14 -0.97 10.35 -39.12 -0.41 -1.38 16 7 C -0.05 -0.46 6.89 -81.98 -0.56 -1.02 16 8 C 0.59 5.64 7.77 -12.86 -0.10 5.54 16 9 O -0.55 -6.76 14.28 5.19 0.07 -6.69 16 10 N -0.72 -4.98 5.54 -61.62 -0.34 -5.32 16 11 C 0.13 0.90 5.68 -4.04 -0.02 0.88 16 12 C -0.14 -0.85 5.44 -26.73 -0.15 -1.00 16 13 C 0.12 1.22 5.67 -4.04 -0.02 1.19 16 14 N -0.74 -8.56 5.56 -60.30 -0.33 -8.90 16 15 C 0.53 9.13 7.85 -10.99 -0.09 9.04 16 16 O -0.52 -11.06 15.86 5.55 0.09 -10.97 16 17 C -0.12 -2.34 6.16 36.00 0.22 -2.12 16 18 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 19 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 20 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.46 13.97 55.49 0.78 -25.69 16 23 Si 0.86 21.75 27.74 -169.99 -4.72 17.03 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 27 H 0.07 0.60 7.62 -51.93 -0.40 0.20 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.10 0.83 6.72 -51.93 -0.35 0.48 16 32 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.14 0.63 7.45 -52.48 -0.39 0.24 16 35 H 0.40 1.79 7.37 -40.82 -0.30 1.49 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.40 3.38 8.47 -40.82 -0.35 3.03 16 43 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 44 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -37.19 394.65 -8.85 -46.04 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.85 Total: 0.22 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.18 Total: -2.69 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.21 Total: -43.32 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.16 Total: -17.66 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.03 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.19 -8.85 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349725434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.259 kcal (2) G-P(sol) polarization free energy of solvation -37.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds