Wall clock time and date at job start Sat Apr 11 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21290 * 119.99814 * 2 1 4 4 N 1.34778 * 120.00346 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00172 * 179.97438 * 4 2 1 6 6 C 1.50693 * 109.47164 * 179.97438 * 5 4 2 7 7 C 1.38384 * 119.92951 * 270.02434 * 6 5 4 8 8 C 1.38340 * 120.29781 * 180.02562 * 7 6 5 9 9 C 1.37978 * 120.14717 * 359.69334 * 8 7 6 10 10 C 1.39566 * 119.84706 * 0.53703 * 9 8 7 11 11 C 1.47810 * 120.14353 * 179.76734 * 10 9 8 12 12 O 1.21560 * 119.99985 * 179.71639 * 11 10 9 13 13 N 1.34775 * 120.00106 * 359.72212 * 11 10 9 14 14 C 1.39383 * 120.00086 * 184.86450 * 13 11 10 15 15 C 1.38624 * 119.58210 * 183.23696 * 14 13 11 16 16 C 1.40801 * 118.79609 * 179.69956 * 15 14 13 17 17 C 1.41538 * 120.99918 * 180.25162 * 16 15 14 18 18 H 1.07997 * 119.99943 * 154.54343 * 17 16 15 19 19 C 1.40036 * 119.99966 * 334.55674 * 17 16 15 20 20 N 1.30740 * 120.00325 * 162.95489 * 19 17 16 21 21 Si 1.86802 * 119.99688 * 342.94351 * 19 17 16 22 22 H 1.48503 * 109.46841 * 95.18301 * 21 19 17 23 23 H 1.48499 * 109.47096 * 215.18196 * 21 19 17 24 24 H 1.48500 * 109.47537 * 335.18150 * 21 19 17 25 25 C 1.41181 * 118.00739 * 0.27837 * 16 15 14 26 26 C 1.37586 * 119.01714 * 0.02562 * 25 16 15 27 27 N 1.32078 * 121.11600 * 0.02562 * 26 25 16 28 28 C 1.37933 * 119.92595 * 89.99675 * 6 5 4 29 29 H 1.09002 * 109.46602 * 269.99924 * 1 2 3 30 30 H 1.08996 * 109.47301 * 29.99879 * 1 2 3 31 31 H 1.08999 * 109.46985 * 150.00090 * 1 2 3 32 32 H 0.97002 * 119.99413 * 359.97438 * 4 2 1 33 33 H 1.08998 * 109.47064 * 59.99627 * 5 4 2 34 34 H 1.09004 * 109.46884 * 299.99708 * 5 4 2 35 35 H 1.07998 * 119.84728 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.92411 * 179.97438 * 8 7 6 37 37 H 1.08004 * 120.07453 * 180.29679 * 9 8 7 38 38 H 0.96998 * 119.99668 * 4.86059 * 13 11 10 39 39 H 1.08007 * 120.60013 * 359.97438 * 15 14 13 40 40 H 0.96993 * 120.00148 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.49170 * 180.02562 * 25 16 15 42 42 H 1.08009 * 119.44219 * 180.02562 * 26 25 16 43 43 H 1.07998 * 120.07450 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1483 -2.5879 -0.0010 7 6 4.3785 -3.2387 1.1984 8 6 4.8402 -4.5428 1.2074 9 6 5.0682 -5.2053 0.0188 10 6 4.8428 -4.5532 -1.1944 11 6 5.0899 -5.2550 -2.4715 12 8 4.8877 -4.6862 -3.5266 13 7 5.5392 -6.5257 -2.4662 14 6 5.8686 -7.1534 -3.6663 15 6 6.2655 -8.4816 -3.6575 16 6 6.5884 -9.1011 -4.8800 17 6 6.9939 -10.4564 -4.9256 18 1 6.8459 -11.0342 -5.8259 19 6 7.5868 -11.0480 -3.8033 20 7 7.6578 -12.3502 -3.7116 21 14 8.2764 -9.9765 -2.4374 22 1 7.2565 -9.8182 -1.3697 23 1 9.4906 -10.6170 -1.8711 24 1 8.6304 -8.6425 -2.9856 25 6 6.4961 -8.3298 -6.0588 26 6 6.0986 -7.0158 -5.9672 27 7 5.8053 -6.4712 -4.8002 28 6 4.3772 -3.2369 -1.1963 29 1 -0.3632 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6960 -2.0072 -0.0005 33 1 4.0096 -0.6534 0.8888 34 1 4.0089 -0.6531 -0.8912 35 1 4.1976 -2.7260 2.1315 36 1 5.0181 -5.0448 2.1469 37 1 5.4241 -6.2250 0.0272 38 1 5.6333 -7.0033 -1.6273 39 1 6.3217 -9.0324 -2.7302 40 1 8.0687 -12.7600 -2.9345 41 1 6.7339 -8.7647 -7.0183 42 1 6.0252 -6.4195 -6.8648 43 1 4.1972 -2.7279 -2.1317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361310084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:08 Heat of formation + Delta-G solvation = -8.668127 kcal Electronic energy + Delta-G solvation = -27348.626028 eV Core-core repulsion = 23358.649283 eV Total energy + Delta-G solvation = -3989.976744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.53766 -39.86762 -39.02229 -37.80999 -35.28466 -34.56218 -33.91198 -32.17273 -31.48942 -31.28766 -30.05033 -28.86670 -26.14366 -26.04323 -24.34059 -22.49479 -22.08328 -21.39069 -20.97571 -19.80752 -18.20927 -17.82191 -17.07407 -16.55687 -16.31711 -16.26109 -15.85771 -15.60046 -15.03652 -14.88975 -14.80994 -14.50401 -14.10237 -13.89275 -13.83746 -13.42062 -13.27480 -13.10272 -13.00253 -12.96286 -12.88489 -12.43037 -12.34806 -11.90329 -11.69823 -11.40544 -11.03007 -10.90718 -10.77497 -10.34251 -10.09970 -9.99926 -9.68811 -9.47801 -9.45313 -9.24248 -9.20249 -8.31791 -7.96131 -7.32769 -7.15594 -4.81017 0.58927 0.94867 2.26659 2.30609 2.56169 2.78330 2.92635 3.05749 3.16382 3.23657 3.26791 3.79212 3.80115 4.20389 4.46332 4.50303 4.50456 4.56055 4.79764 4.85018 4.92253 4.96409 5.01875 5.23620 5.29934 5.36081 5.46063 5.51913 5.64736 5.70057 5.99097 6.03172 6.04518 6.12869 6.23650 6.28088 6.33914 6.50123 6.54229 6.87016 7.05584 7.13067 7.16678 7.48688 7.64118 7.86255 7.93874 8.12323 8.34287 8.54384 8.57693 9.38350 9.85292 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.002323 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.803321 B =12050.528084 C =13037.913148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.549 6.549 4 N -0.727 5.727 5 C 0.162 3.838 6 C -0.121 4.121 7 C -0.081 4.081 8 C -0.126 4.126 9 C -0.081 4.081 10 C -0.125 4.125 11 C 0.542 3.458 12 O -0.469 6.469 13 N -0.658 5.658 14 C 0.370 3.630 15 C -0.323 4.323 16 C 0.126 3.874 17 C -0.432 4.432 18 H 0.096 0.904 19 C 0.084 3.916 20 N -0.795 5.795 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.290 1.290 24 H -0.243 1.243 25 C -0.272 4.272 26 C 0.129 3.871 27 N -0.558 5.558 28 C -0.042 4.042 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.403 0.597 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.406 0.594 39 H 0.106 0.894 40 H 0.289 0.711 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 14.017 13.818 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.426 6.426 4 N -0.380 5.380 5 C 0.039 3.961 6 C -0.122 4.122 7 C -0.099 4.099 8 C -0.144 4.144 9 C -0.100 4.100 10 C -0.128 4.128 11 C 0.328 3.672 12 O -0.339 6.339 13 N -0.304 5.304 14 C 0.143 3.857 15 C -0.348 4.348 16 C 0.118 3.882 17 C -0.462 4.462 18 H 0.114 0.886 19 C -0.137 4.137 20 N -0.418 5.418 21 Si 0.745 3.255 22 H -0.198 1.198 23 H -0.218 1.218 24 H -0.166 1.166 25 C -0.295 4.295 26 C -0.022 4.022 27 N -0.277 5.277 28 C -0.061 4.061 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.238 0.762 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.242 0.758 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.148 0.852 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.812 15.883 13.158 22.429 hybrid contribution 0.502 -1.619 1.145 2.045 sum -8.310 14.264 14.303 21.842 Atomic orbital electron populations 1.21887 0.91484 1.05092 1.04783 1.20864 0.90695 0.83330 0.75416 1.90739 1.70850 1.31412 1.49626 1.46202 1.07009 1.09045 1.75740 1.20177 0.79970 0.92500 1.03481 1.19775 1.03183 0.95926 0.93266 1.21249 0.96619 0.94586 0.97490 1.21102 1.00280 0.94881 0.98125 1.21470 0.96844 0.99779 0.91876 1.20150 1.03786 0.95556 0.93295 1.18307 0.78481 0.81672 0.88778 1.90871 1.46470 1.64963 1.31605 1.43397 1.64753 1.13799 1.08428 1.17931 0.94111 0.88245 0.85449 1.21135 1.19911 0.94577 0.99197 1.17665 0.87583 0.92704 0.90279 1.19541 1.32947 0.93524 1.00165 0.88609 1.26244 0.93493 0.95205 0.98759 1.69635 1.31747 1.11215 1.29238 0.86222 0.77793 0.81807 0.79665 1.19791 1.21809 1.16621 1.21873 1.13598 0.95449 0.98628 1.21892 0.93952 0.92609 0.93795 1.67295 1.25862 1.37659 0.96921 1.21212 0.93715 0.92799 0.98381 0.88835 0.88786 0.90035 0.76193 0.90384 0.90224 0.85457 0.85068 0.85377 0.75785 0.87621 0.90069 0.87154 0.85191 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.30 36.01 0.37 -0.51 16 2 C 0.51 4.62 7.94 -10.98 -0.09 4.53 16 3 O -0.55 -7.48 17.10 5.55 0.09 -7.39 16 4 N -0.73 -5.50 5.55 -61.47 -0.34 -5.84 16 5 C 0.16 1.38 5.79 -5.20 -0.03 1.35 16 6 C -0.12 -1.08 5.24 -104.68 -0.55 -1.63 16 7 C -0.08 -0.61 9.69 -39.49 -0.38 -1.00 16 8 C -0.13 -1.01 10.03 -39.64 -0.40 -1.40 16 9 C -0.08 -0.82 9.54 -39.18 -0.37 -1.20 16 10 C -0.12 -1.63 5.87 -104.97 -0.62 -2.24 16 11 C 0.54 9.64 7.73 -12.35 -0.10 9.54 16 12 O -0.47 -10.11 14.62 5.31 0.08 -10.03 16 13 N -0.66 -12.03 5.33 -12.36 -0.07 -12.09 16 14 C 0.37 8.36 7.41 -154.77 -1.15 7.22 16 15 C -0.32 -7.53 7.01 -38.47 -0.27 -7.80 16 16 C 0.13 3.12 5.24 -106.55 -0.56 2.56 16 17 C -0.43 -11.13 9.66 -37.65 -0.36 -11.49 16 18 H 0.10 2.57 8.06 -52.49 -0.42 2.14 16 19 C 0.08 2.09 5.45 -17.34 -0.09 1.99 16 20 N -0.79 -19.92 13.92 55.55 0.77 -19.15 16 21 Si 0.92 19.49 24.41 -169.99 -4.15 15.34 16 22 H -0.27 -5.33 6.69 56.52 0.38 -4.96 16 23 H -0.29 -5.97 7.11 56.52 0.40 -5.56 16 24 H -0.24 -5.42 6.64 56.52 0.38 -5.04 16 25 C -0.27 -6.24 9.90 -38.70 -0.38 -6.63 16 26 C 0.13 2.88 11.15 -17.68 -0.20 2.69 16 27 N -0.56 -13.34 7.86 -12.53 -0.10 -13.44 16 28 C -0.04 -0.48 9.24 -39.18 -0.36 -0.85 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.40 2.24 8.46 -40.82 -0.35 1.89 16 33 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.13 1.13 6.42 -52.48 -0.34 0.79 16 38 H 0.41 5.96 6.74 -40.82 -0.28 5.69 16 39 H 0.11 2.35 4.16 -52.48 -0.22 2.13 16 40 H 0.29 6.49 8.29 -40.82 -0.34 6.15 16 41 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 42 H 0.13 2.49 8.06 -52.48 -0.42 2.07 16 43 H 0.14 1.73 7.65 -52.49 -0.40 1.33 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -33.69 369.06 -8.67 -42.36 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.98 Total: 9.54 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -5.54 Total: -4.87 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.27 Total: -50.51 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.17 Total: -17.42 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.15 Total: 15.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.69 -8.67 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361310084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.690 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds