Wall clock time and date at job start Sat Apr 11 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21290 * 119.99814 * 2 1 4 4 N 1.34778 * 120.00346 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00172 * 179.97438 * 4 2 1 6 6 C 1.50693 * 109.47164 * 179.97438 * 5 4 2 7 7 C 1.38384 * 119.92951 * 270.02434 * 6 5 4 8 8 C 1.38340 * 120.29781 * 180.02562 * 7 6 5 9 9 C 1.37978 * 120.14717 * 359.69334 * 8 7 6 10 10 C 1.39566 * 119.84706 * 0.53703 * 9 8 7 11 11 C 1.47810 * 120.14353 * 179.76734 * 10 9 8 12 12 O 1.21560 * 119.99985 * 179.71639 * 11 10 9 13 13 N 1.34775 * 120.00106 * 359.72212 * 11 10 9 14 14 C 1.39383 * 120.00086 * 184.86450 * 13 11 10 15 15 C 1.38624 * 119.58210 * 183.23696 * 14 13 11 16 16 C 1.40801 * 118.79609 * 179.69956 * 15 14 13 17 17 C 1.41538 * 120.99918 * 180.25162 * 16 15 14 18 18 H 1.07997 * 119.99943 * 154.54343 * 17 16 15 19 19 C 1.40036 * 119.99966 * 334.55674 * 17 16 15 20 20 N 1.30740 * 120.00325 * 162.95489 * 19 17 16 21 21 Si 1.86802 * 119.99688 * 342.94351 * 19 17 16 22 22 H 1.48503 * 109.46841 * 95.18301 * 21 19 17 23 23 H 1.48499 * 109.47096 * 215.18196 * 21 19 17 24 24 H 1.48500 * 109.47537 * 335.18150 * 21 19 17 25 25 C 1.41181 * 118.00739 * 0.27837 * 16 15 14 26 26 C 1.37586 * 119.01714 * 0.02562 * 25 16 15 27 27 N 1.32078 * 121.11600 * 0.02562 * 26 25 16 28 28 C 1.37933 * 119.92595 * 89.99675 * 6 5 4 29 29 H 1.09002 * 109.46602 * 269.99924 * 1 2 3 30 30 H 1.08996 * 109.47301 * 29.99879 * 1 2 3 31 31 H 1.08999 * 109.46985 * 150.00090 * 1 2 3 32 32 H 0.97002 * 119.99413 * 359.97438 * 4 2 1 33 33 H 1.08998 * 109.47064 * 59.99627 * 5 4 2 34 34 H 1.09004 * 109.46884 * 299.99708 * 5 4 2 35 35 H 1.07998 * 119.84728 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.92411 * 179.97438 * 8 7 6 37 37 H 1.08004 * 120.07453 * 180.29679 * 9 8 7 38 38 H 0.96998 * 119.99668 * 4.86059 * 13 11 10 39 39 H 1.08007 * 120.60013 * 359.97438 * 15 14 13 40 40 H 0.96993 * 120.00148 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.49170 * 180.02562 * 25 16 15 42 42 H 1.08009 * 119.44219 * 180.02562 * 26 25 16 43 43 H 1.07998 * 120.07450 * 0.02562 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1483 -2.5879 -0.0010 7 6 4.3785 -3.2387 1.1984 8 6 4.8402 -4.5428 1.2074 9 6 5.0682 -5.2053 0.0188 10 6 4.8428 -4.5532 -1.1944 11 6 5.0899 -5.2550 -2.4715 12 8 4.8877 -4.6862 -3.5266 13 7 5.5392 -6.5257 -2.4662 14 6 5.8686 -7.1534 -3.6663 15 6 6.2655 -8.4816 -3.6575 16 6 6.5884 -9.1011 -4.8800 17 6 6.9939 -10.4564 -4.9256 18 1 6.8459 -11.0342 -5.8259 19 6 7.5868 -11.0480 -3.8033 20 7 7.6578 -12.3502 -3.7116 21 14 8.2764 -9.9765 -2.4374 22 1 7.2565 -9.8182 -1.3697 23 1 9.4906 -10.6170 -1.8711 24 1 8.6304 -8.6425 -2.9856 25 6 6.4961 -8.3298 -6.0588 26 6 6.0986 -7.0158 -5.9672 27 7 5.8053 -6.4712 -4.8002 28 6 4.3772 -3.2369 -1.1963 29 1 -0.3632 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6960 -2.0072 -0.0005 33 1 4.0096 -0.6534 0.8888 34 1 4.0089 -0.6531 -0.8912 35 1 4.1976 -2.7260 2.1315 36 1 5.0181 -5.0448 2.1469 37 1 5.4241 -6.2250 0.0272 38 1 5.6333 -7.0033 -1.6273 39 1 6.3217 -9.0324 -2.7302 40 1 8.0687 -12.7600 -2.9345 41 1 6.7339 -8.7647 -7.0183 42 1 6.0252 -6.4195 -6.8648 43 1 4.1972 -2.7279 -2.1317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361310084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:07 Heat of formation + Delta-G solvation = -31.723722 kcal Electronic energy + Delta-G solvation = -27349.625793 eV Core-core repulsion = 23358.649283 eV Total energy + Delta-G solvation = -3990.976510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73611 -40.82308 -40.20801 -39.19655 -36.26381 -36.05982 -35.61305 -33.28904 -32.94129 -32.24291 -30.79762 -30.27491 -27.96432 -26.78303 -25.49286 -24.27274 -22.89521 -22.80716 -21.66625 -21.27132 -19.60987 -19.29020 -18.00702 -17.68154 -17.46146 -17.21042 -17.01425 -16.65565 -16.44637 -16.28929 -15.99075 -15.88550 -15.56444 -14.95934 -14.77484 -14.73550 -14.62613 -14.50685 -14.02483 -13.89256 -13.58332 -13.45576 -13.25995 -12.92862 -12.79243 -12.74301 -12.63193 -12.60084 -12.14588 -11.81709 -11.62210 -11.32975 -11.12659 -11.09360 -10.19549 -10.18704 -10.03056 -9.97001 -9.73323 -9.04570 -9.00552 -6.75544 -0.28880 0.19442 0.59092 0.74579 1.20856 1.39215 1.47251 1.62308 1.81605 1.90945 2.07789 2.34005 2.63619 2.87604 3.40054 3.50818 3.51649 3.84271 3.95283 3.98511 4.05842 4.19299 4.23058 4.39738 4.49059 4.54320 4.58927 4.61964 4.65747 4.68520 4.72168 4.79575 4.94147 5.08428 5.09323 5.23144 5.27033 5.32024 5.36554 5.41797 5.46441 5.65158 5.81112 5.99344 6.15840 6.37329 6.49900 6.53099 6.65016 7.09624 7.21966 7.63789 8.04943 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019702 B = 0.002323 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.803321 B =12050.528084 C =13037.913148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.504 3.496 3 O -0.602 6.602 4 N -0.717 5.717 5 C 0.164 3.836 6 C -0.113 4.113 7 C -0.062 4.062 8 C -0.115 4.115 9 C -0.079 4.079 10 C -0.147 4.147 11 C 0.541 3.459 12 O -0.517 6.517 13 N -0.651 5.651 14 C 0.366 3.634 15 C -0.329 4.329 16 C 0.111 3.889 17 C -0.463 4.463 18 H 0.067 0.933 19 C 0.051 3.949 20 N -0.826 5.826 21 Si 0.967 3.033 22 H -0.240 1.240 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.284 4.284 26 C 0.129 3.871 27 N -0.578 5.578 28 C -0.052 4.052 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.415 0.585 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.143 0.857 38 H 0.423 0.577 39 H 0.119 0.881 40 H 0.300 0.700 41 H 0.121 0.879 42 H 0.159 0.841 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 14.861 17.676 25.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.293 3.707 3 O -0.483 6.483 4 N -0.370 5.370 5 C 0.040 3.960 6 C -0.113 4.113 7 C -0.081 4.081 8 C -0.133 4.133 9 C -0.098 4.098 10 C -0.150 4.150 11 C 0.330 3.670 12 O -0.391 6.391 13 N -0.298 5.298 14 C 0.138 3.862 15 C -0.354 4.354 16 C 0.102 3.898 17 C -0.493 4.493 18 H 0.085 0.915 19 C -0.168 4.168 20 N -0.451 5.451 21 Si 0.791 3.209 22 H -0.164 1.164 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.308 4.308 26 C -0.023 4.023 27 N -0.298 5.298 28 C -0.071 4.071 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.252 0.748 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.178 0.822 36 H 0.185 0.815 37 H 0.160 0.840 38 H 0.262 0.738 39 H 0.136 0.864 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.177 0.823 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.558 16.665 17.057 25.691 hybrid contribution 0.668 -1.804 -0.066 1.925 sum -8.889 14.861 16.991 24.260 Atomic orbital electron populations 1.21906 0.88231 1.06002 1.06349 1.21598 0.92278 0.82673 0.74118 1.90716 1.72159 1.33229 1.52228 1.46152 1.06675 1.09412 1.74738 1.20094 0.80655 0.92228 1.03015 1.19713 1.02964 0.95744 0.92917 1.21641 0.94091 0.94437 0.97907 1.21486 0.98546 0.94765 0.98507 1.21676 0.96223 1.00470 0.91409 1.19783 1.07268 0.96026 0.91954 1.19058 0.76818 0.81072 0.90074 1.90834 1.48576 1.65817 1.33853 1.43403 1.64406 1.14260 1.07778 1.18188 0.93230 0.88309 0.86517 1.21231 1.19982 0.95013 0.99185 1.17880 0.87646 0.92565 0.91667 1.19524 1.35432 0.94233 1.00103 0.91466 1.26926 0.93172 0.96236 1.00433 1.69643 1.32545 1.12305 1.30578 0.85475 0.78413 0.79123 0.77933 1.16432 1.20279 1.18614 1.22067 1.13995 0.95846 0.98846 1.22359 0.92783 0.92613 0.94559 1.67432 1.26215 1.38371 0.97757 1.21109 0.94635 0.92599 0.98772 0.86803 0.89112 0.87877 0.74774 0.89568 0.92118 0.82221 0.81519 0.83967 0.73788 0.86399 0.88867 0.86073 0.82342 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.30 71.24 0.73 -0.58 16 2 C 0.50 8.52 7.94 87.66 0.70 9.21 16 3 O -0.60 -16.38 17.10 -3.06 -0.05 -16.43 16 4 N -0.72 -9.57 5.55 -466.78 -2.59 -12.16 16 5 C 0.16 2.57 5.79 85.63 0.50 3.06 16 6 C -0.11 -1.75 5.24 -19.90 -0.10 -1.85 16 7 C -0.06 -0.66 9.69 22.33 0.22 -0.44 16 8 C -0.12 -1.26 10.03 22.23 0.22 -1.03 16 9 C -0.08 -1.34 9.54 22.53 0.21 -1.13 16 10 C -0.15 -3.65 5.87 -20.09 -0.12 -3.77 16 11 C 0.54 19.13 7.73 86.78 0.67 19.80 16 12 O -0.52 -22.83 14.62 -3.90 -0.06 -22.89 16 13 N -0.65 -23.15 5.33 -311.30 -1.66 -24.81 16 14 C 0.37 16.43 7.41 132.79 0.98 17.41 16 15 C -0.33 -15.22 7.01 22.99 0.16 -15.06 16 16 C 0.11 5.57 5.24 -21.12 -0.11 5.45 16 17 C -0.46 -24.65 9.66 23.52 0.23 -24.43 16 18 H 0.07 3.82 8.06 -2.91 -0.02 3.80 16 19 C 0.05 2.53 5.45 85.29 0.47 3.00 16 20 N -0.83 -41.78 13.92 21.84 0.30 -41.47 16 21 Si 0.97 38.96 24.41 68.60 1.67 40.64 16 22 H -0.24 -8.38 6.69 99.48 0.67 -7.72 16 23 H -0.28 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.26 -11.32 6.64 99.48 0.66 -10.66 16 25 C -0.28 -13.26 9.90 22.84 0.23 -13.04 16 26 C 0.13 5.75 11.15 84.50 0.94 6.70 16 27 N -0.58 -27.73 7.86 -193.57 -1.52 -29.25 16 28 C -0.05 -1.16 9.24 22.53 0.21 -0.95 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.42 3.56 8.46 -92.71 -0.78 2.77 16 33 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16 34 H 0.06 1.20 8.08 -2.38 -0.02 1.18 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.14 1.95 6.42 -2.91 -0.02 1.93 16 38 H 0.42 11.51 6.74 -92.71 -0.62 10.88 16 39 H 0.12 5.05 4.16 -2.91 -0.01 5.04 16 40 H 0.30 13.41 8.29 -92.71 -0.77 12.64 16 41 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 42 H 0.16 5.98 8.06 -2.91 -0.02 5.96 16 43 H 0.12 3.10 7.65 -2.91 -0.02 3.08 16 Total: -1.00 -77.12 369.06 1.82 -75.31 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.41 Total: 28.72 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.13 Total: 2.36 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -5.47 Total: -107.70 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.11 Total: -39.33 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 1.67 Total: 40.64 kcal Total: -77.12 1.82 -75.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361310084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.583 kcal (2) G-P(sol) polarization free energy of solvation -77.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds