Wall clock time and date at job start Sat Apr 11 2020 05:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00279 * 2 1 4 4 C 1.34777 * 119.99897 * 180.02562 * 2 1 3 5 5 O 1.21546 * 119.99729 * 2.27415 * 4 2 1 6 6 C 1.47906 * 119.99865 * 182.27215 * 4 2 1 7 7 C 1.39499 * 119.63766 * 172.45697 * 6 4 2 8 8 C 1.38273 * 119.14601 * 179.97438 * 7 6 4 9 9 C 1.39395 * 118.43499 * 359.97438 * 8 7 6 10 10 N 1.39371 * 120.39763 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99819 * 325.01012 * 10 9 8 12 12 O 1.21553 * 120.00296 * 4.69690 * 11 10 9 13 13 C 1.47844 * 119.99628 * 184.68770 * 11 10 9 14 14 C 1.39937 * 120.02894 * 359.73690 * 13 11 10 15 15 C 1.38326 * 120.35595 * 179.69362 * 14 13 11 16 16 C 1.37757 * 120.41196 * 0.59538 * 15 14 13 17 17 C 1.40746 * 120.04592 * 359.68351 * 16 15 14 18 18 C 1.41438 * 120.17860 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99858 * 33.28055 * 18 17 16 20 20 C 1.39937 * 120.00239 * 213.28031 * 18 17 16 21 21 N 1.30834 * 119.99730 * 6.32274 * 20 18 17 22 22 Si 1.86793 * 120.00197 * 186.31972 * 20 18 17 23 23 H 1.48497 * 109.47209 * 90.00367 * 22 20 18 24 24 H 1.48507 * 109.47431 * 210.00311 * 22 20 18 25 25 H 1.48505 * 109.47335 * 330.00279 * 22 20 18 26 26 C 1.39023 * 120.02457 * 180.02562 * 13 11 10 27 27 C 1.39394 * 119.20059 * 0.02562 * 9 8 7 28 28 N 1.31342 * 120.78608 * 359.97438 * 27 9 8 29 29 H 1.09001 * 109.47717 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47120 * 300.00095 * 1 2 3 31 31 H 1.09002 * 109.46998 * 59.99681 * 1 2 3 32 32 H 1.08995 * 109.47071 * 263.71240 * 3 2 1 33 33 H 1.09009 * 109.46764 * 23.71278 * 3 2 1 34 34 H 1.08997 * 109.47334 * 143.70651 * 3 2 1 35 35 H 1.08001 * 120.42710 * 359.95439 * 7 6 4 36 36 H 1.08006 * 120.77956 * 180.02562 * 8 7 6 37 37 H 0.96997 * 119.99846 * 145.01836 * 10 9 8 38 38 H 1.07999 * 119.81907 * 359.96673 * 14 13 11 39 39 H 1.08002 * 119.79357 * 180.27728 * 15 14 13 40 40 H 1.07998 * 119.97466 * 179.69862 * 16 15 14 41 41 H 0.97002 * 119.99412 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.20287 * 359.97438 * 26 13 11 43 43 H 1.07996 * 119.60614 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5318 -2.2194 -0.0428 6 6 3.6170 -1.1677 0.0503 7 6 4.3014 -2.3729 0.2086 8 6 5.6834 -2.3617 0.2542 9 6 6.3413 -1.1382 0.1388 10 7 7.7332 -1.0794 0.1800 11 6 8.4202 -1.9254 0.9729 12 8 7.8334 -2.7952 1.5866 13 6 9.8878 -1.7955 1.0962 14 6 10.5647 -0.7980 0.3855 15 6 11.9369 -0.6664 0.5007 16 6 12.6544 -1.5230 1.3064 17 6 11.9917 -2.5361 2.0244 18 6 12.7255 -3.4168 2.8529 19 1 13.6058 -3.0642 3.3699 20 6 12.3111 -4.7449 3.0027 21 7 11.3206 -5.2062 2.2831 22 14 13.1721 -5.8592 4.2300 23 1 12.4953 -5.7603 5.5480 24 1 13.1155 -7.2630 3.7487 25 1 14.5901 -5.4405 4.3689 26 6 10.5972 -2.6682 1.9136 27 6 5.5904 0.0257 -0.0172 28 7 4.2784 -0.0209 -0.0564 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.4767 1.5270 -1.0214 33 1 1.5643 2.0538 0.4133 34 1 3.0965 1.1692 0.6083 35 1 3.7589 -3.3028 0.2948 36 1 6.2398 -3.2794 0.3756 37 1 8.2074 -0.4296 -0.3620 38 1 10.0123 -0.1245 -0.2529 39 1 12.4495 0.1095 -0.0484 40 1 13.7261 -1.4169 1.3874 41 1 11.0336 -6.1270 2.3867 42 1 10.0794 -3.4422 2.4606 43 1 6.0934 0.9771 -0.1076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361506870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:38 Heat of formation + Delta-G solvation = 9.593705 kcal Electronic energy + Delta-G solvation = -27606.577540 eV Core-core repulsion = 23617.392688 eV Total energy + Delta-G solvation = -3989.184852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.09357 -39.92704 -38.71954 -37.25146 -35.77457 -34.96266 -33.78987 -32.32634 -31.10103 -29.86205 -29.60760 -28.02727 -26.55939 -25.45350 -24.33589 -23.69742 -22.31954 -21.11482 -20.37551 -19.82541 -18.28832 -17.49666 -17.45381 -16.97315 -16.11696 -15.97643 -15.64171 -15.32781 -15.03997 -14.88717 -14.43323 -14.34212 -13.94961 -13.85719 -13.53771 -13.35337 -13.12598 -12.94288 -12.78717 -12.67032 -12.64636 -12.38668 -11.94176 -11.82728 -11.26724 -11.23529 -10.97181 -10.77467 -10.60580 -10.40428 -10.23925 -9.84973 -9.78114 -9.64117 -9.37675 -9.12196 -8.85526 -8.36112 -7.82416 -7.60161 -6.82833 -4.56510 0.52384 1.14615 1.90890 2.60747 2.68179 2.79567 3.03351 3.04096 3.06799 3.14218 3.51612 3.78927 3.86988 3.98037 4.52783 4.53553 4.74401 4.86151 5.02628 5.06059 5.13338 5.16081 5.39682 5.42112 5.50324 5.55305 5.59337 5.81382 5.85445 5.97063 6.05496 6.05750 6.21735 6.36459 6.53114 6.69483 6.78544 6.84283 7.08904 7.10078 7.19156 7.40113 7.50573 7.52945 7.65170 7.83206 7.98552 8.01617 8.35814 8.45758 8.67256 8.72100 10.12383 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.002259 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.094803 B =12392.576753 C =13521.257489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.607 5.607 3 C 0.077 3.923 4 C 0.575 3.425 5 O -0.540 6.540 6 C 0.038 3.962 7 C -0.082 4.082 8 C -0.093 4.093 9 C 0.143 3.857 10 N -0.672 5.672 11 C 0.566 3.434 12 O -0.519 6.519 13 C -0.136 4.136 14 C -0.208 4.208 15 C -0.101 4.101 16 C -0.197 4.197 17 C 0.098 3.902 18 C -0.463 4.463 19 H 0.081 0.919 20 C 0.070 3.930 21 N -0.798 5.798 22 Si 0.916 3.084 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.074 4.074 27 C 0.061 3.939 28 N -0.432 5.432 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.415 0.585 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.284 0.716 42 H 0.136 0.864 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 11.073 -5.270 17.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.339 5.339 3 C -0.065 4.065 4 C 0.363 3.637 5 O -0.417 6.417 6 C -0.100 4.100 7 C -0.103 4.103 8 C -0.121 4.121 9 C 0.043 3.957 10 N -0.318 5.318 11 C 0.359 3.641 12 O -0.395 6.395 13 C -0.140 4.140 14 C -0.228 4.228 15 C -0.119 4.119 16 C -0.217 4.217 17 C 0.095 3.905 18 C -0.492 4.492 19 H 0.099 0.901 20 C -0.147 4.147 21 N -0.424 5.424 22 Si 0.740 3.260 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.094 4.094 27 C -0.102 4.102 28 N -0.143 5.143 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.254 0.746 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.153 0.847 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.011 10.414 -4.964 18.150 hybrid contribution 1.147 -0.804 0.202 1.415 sum -12.864 9.611 -4.763 16.749 Atomic orbital electron populations 1.21727 0.79176 1.04208 1.01279 1.47570 1.06953 1.06905 1.72470 1.22382 0.97863 0.83122 1.03181 1.17880 0.85975 0.83520 0.76296 1.90768 1.68906 1.31088 1.50973 1.20829 0.93670 0.90124 1.05379 1.21997 0.93923 0.99079 0.95318 1.21902 0.93879 0.98736 0.97552 1.19122 0.84861 0.94746 0.96961 1.43581 1.03493 1.39286 1.45461 1.19122 0.88558 0.79556 0.76858 1.90721 1.70508 1.32975 1.45251 1.19322 0.89176 1.01034 1.04433 1.20375 0.94732 1.01560 1.06180 1.20476 0.93597 0.98642 0.99219 1.21273 0.98173 1.00952 1.01308 1.17631 0.91187 0.91091 0.90548 1.19566 1.10704 0.94212 1.24759 0.90061 1.25932 0.94481 0.99126 0.95193 1.69721 1.22576 1.17096 1.32979 0.86180 0.80393 0.78794 0.80608 1.19243 1.20169 1.18623 1.21712 0.93913 0.96754 0.97035 1.22724 0.89249 0.97030 1.01236 1.67900 1.08535 1.27052 1.10847 0.89522 0.92118 0.92179 0.92537 0.92531 0.87241 0.83353 0.82221 0.74620 0.89011 0.88516 0.88248 0.90493 0.84650 0.81753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.66 59.85 0.64 1.30 16 2 N -0.61 -6.67 3.27 -190.62 -0.62 -7.30 16 3 C 0.08 0.67 9.34 59.85 0.56 1.23 16 4 C 0.58 7.99 7.65 -12.30 -0.09 7.89 16 5 O -0.54 -8.83 15.67 5.33 0.08 -8.75 16 6 C 0.04 0.51 6.62 -83.01 -0.55 -0.04 16 7 C -0.08 -1.15 9.62 -39.10 -0.38 -1.52 16 8 C -0.09 -1.39 8.78 -39.14 -0.34 -1.74 16 9 C 0.14 1.97 6.32 -83.57 -0.53 1.44 16 10 N -0.67 -9.71 5.27 -10.59 -0.06 -9.77 16 11 C 0.57 10.97 7.62 -12.33 -0.09 10.88 16 12 O -0.52 -11.54 13.79 5.32 0.07 -11.47 16 13 C -0.14 -2.90 5.87 -105.04 -0.62 -3.51 16 14 C -0.21 -3.87 9.55 -38.91 -0.37 -4.25 16 15 C -0.10 -1.95 10.01 -39.72 -0.40 -2.35 16 16 C -0.20 -4.33 9.78 -38.81 -0.38 -4.71 16 17 C 0.10 2.43 5.51 -106.87 -0.59 1.84 16 18 C -0.46 -11.59 9.05 -37.73 -0.34 -11.94 16 19 H 0.08 1.94 7.85 -52.49 -0.41 1.52 16 20 C 0.07 1.71 5.30 -17.34 -0.09 1.62 16 21 N -0.80 -20.37 10.93 55.55 0.61 -19.76 16 22 Si 0.92 18.30 29.56 -169.99 -5.03 13.28 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 C -0.07 -1.83 8.17 -38.43 -0.31 -2.15 16 27 C 0.06 0.68 11.12 -17.33 -0.19 0.49 16 28 N -0.43 -5.15 6.02 -9.64 -0.06 -5.21 16 29 H 0.09 0.85 6.90 -51.93 -0.36 0.49 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.37 8.03 -51.92 -0.42 -0.05 16 34 H 0.11 1.07 5.26 -52.13 -0.27 0.80 16 35 H 0.15 1.98 7.65 -52.49 -0.40 1.58 16 36 H 0.16 2.67 6.30 -52.48 -0.33 2.34 16 37 H 0.42 4.75 6.85 -40.82 -0.28 4.47 16 38 H 0.09 1.32 6.39 -52.49 -0.34 0.99 16 39 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 41 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 42 H 0.14 3.66 5.99 -52.49 -0.31 3.35 16 43 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -29.79 364.93 -8.38 -38.17 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -4.79 Total: 10.81 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -4.08 Total: -5.51 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.13 Total: -42.04 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.16 Total: -20.21 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.79 -8.38 -38.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361506870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.764 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds