Wall clock time and date at job start Sat Apr 11 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00279 * 2 1 4 4 C 1.34777 * 119.99897 * 180.02562 * 2 1 3 5 5 O 1.21546 * 119.99729 * 2.27415 * 4 2 1 6 6 C 1.47906 * 119.99865 * 182.27215 * 4 2 1 7 7 C 1.39499 * 119.63766 * 172.45697 * 6 4 2 8 8 C 1.38273 * 119.14601 * 179.97438 * 7 6 4 9 9 C 1.39395 * 118.43499 * 359.97438 * 8 7 6 10 10 N 1.39371 * 120.39763 * 179.97438 * 9 8 7 11 11 C 1.34776 * 119.99819 * 325.01012 * 10 9 8 12 12 O 1.21553 * 120.00296 * 4.69690 * 11 10 9 13 13 C 1.47844 * 119.99628 * 184.68770 * 11 10 9 14 14 C 1.39937 * 120.02894 * 359.73690 * 13 11 10 15 15 C 1.38326 * 120.35595 * 179.69362 * 14 13 11 16 16 C 1.37757 * 120.41196 * 0.59538 * 15 14 13 17 17 C 1.40746 * 120.04592 * 359.68351 * 16 15 14 18 18 C 1.41438 * 120.17860 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99858 * 33.28055 * 18 17 16 20 20 C 1.39937 * 120.00239 * 213.28031 * 18 17 16 21 21 N 1.30834 * 119.99730 * 6.32274 * 20 18 17 22 22 Si 1.86793 * 120.00197 * 186.31972 * 20 18 17 23 23 H 1.48497 * 109.47209 * 90.00367 * 22 20 18 24 24 H 1.48507 * 109.47431 * 210.00311 * 22 20 18 25 25 H 1.48505 * 109.47335 * 330.00279 * 22 20 18 26 26 C 1.39023 * 120.02457 * 180.02562 * 13 11 10 27 27 C 1.39394 * 119.20059 * 0.02562 * 9 8 7 28 28 N 1.31342 * 120.78608 * 359.97438 * 27 9 8 29 29 H 1.09001 * 109.47717 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47120 * 300.00095 * 1 2 3 31 31 H 1.09002 * 109.46998 * 59.99681 * 1 2 3 32 32 H 1.08995 * 109.47071 * 263.71240 * 3 2 1 33 33 H 1.09009 * 109.46764 * 23.71278 * 3 2 1 34 34 H 1.08997 * 109.47334 * 143.70651 * 3 2 1 35 35 H 1.08001 * 120.42710 * 359.95439 * 7 6 4 36 36 H 1.08006 * 120.77956 * 180.02562 * 8 7 6 37 37 H 0.96997 * 119.99846 * 145.01836 * 10 9 8 38 38 H 1.07999 * 119.81907 * 359.96673 * 14 13 11 39 39 H 1.08002 * 119.79357 * 180.27728 * 15 14 13 40 40 H 1.07998 * 119.97466 * 179.69862 * 16 15 14 41 41 H 0.97002 * 119.99412 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.20287 * 359.97438 * 26 13 11 43 43 H 1.07996 * 119.60614 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5318 -2.2194 -0.0428 6 6 3.6170 -1.1677 0.0503 7 6 4.3014 -2.3729 0.2086 8 6 5.6834 -2.3617 0.2542 9 6 6.3413 -1.1382 0.1388 10 7 7.7332 -1.0794 0.1800 11 6 8.4202 -1.9254 0.9729 12 8 7.8334 -2.7952 1.5866 13 6 9.8878 -1.7955 1.0962 14 6 10.5647 -0.7980 0.3855 15 6 11.9369 -0.6664 0.5007 16 6 12.6544 -1.5230 1.3064 17 6 11.9917 -2.5361 2.0244 18 6 12.7255 -3.4168 2.8529 19 1 13.6058 -3.0642 3.3699 20 6 12.3111 -4.7449 3.0027 21 7 11.3206 -5.2062 2.2831 22 14 13.1721 -5.8592 4.2300 23 1 12.4953 -5.7603 5.5480 24 1 13.1155 -7.2630 3.7487 25 1 14.5901 -5.4405 4.3689 26 6 10.5972 -2.6682 1.9136 27 6 5.5904 0.0257 -0.0172 28 7 4.2784 -0.0209 -0.0564 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.4767 1.5270 -1.0214 33 1 1.5643 2.0538 0.4133 34 1 3.0965 1.1692 0.6083 35 1 3.7589 -3.3028 0.2948 36 1 6.2398 -3.2794 0.3756 37 1 8.2074 -0.4296 -0.3620 38 1 10.0123 -0.1245 -0.2529 39 1 12.4495 0.1095 -0.0484 40 1 13.7261 -1.4169 1.3874 41 1 11.0336 -6.1270 2.3867 42 1 10.0794 -3.4422 2.4606 43 1 6.0934 0.9771 -0.1076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361506870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:37 Heat of formation + Delta-G solvation = -8.379555 kcal Electronic energy + Delta-G solvation = -27607.356919 eV Core-core repulsion = 23617.392688 eV Total energy + Delta-G solvation = -3989.964231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.23113 -41.18779 -39.92611 -38.86523 -36.73695 -36.29320 -35.51488 -33.44204 -32.49675 -31.37139 -31.12755 -28.80812 -27.56108 -27.13466 -25.52348 -24.81295 -23.67222 -22.79219 -21.55726 -21.12352 -19.75549 -18.92076 -18.48672 -18.07204 -17.58869 -17.04379 -16.87938 -16.67149 -16.48161 -16.17568 -15.84468 -15.63400 -15.08897 -14.97357 -14.90633 -14.62749 -14.46777 -14.28414 -14.13256 -13.85863 -13.55278 -13.29012 -13.16072 -12.91912 -12.86621 -12.77648 -12.56347 -12.20645 -12.08723 -11.94399 -11.52517 -11.48008 -11.18241 -11.08642 -10.80820 -10.29546 -9.79214 -9.60511 -9.34120 -9.32712 -8.59886 -6.42786 -0.60359 0.08785 0.29832 0.99576 1.36882 1.44207 1.50002 1.53208 1.82023 1.95435 2.01189 2.20159 2.69173 2.80670 3.01793 3.55420 3.63246 3.66647 3.75105 3.87634 4.07773 4.36453 4.40164 4.47996 4.52249 4.56408 4.58597 4.74306 4.86416 4.90259 4.92451 4.95575 5.04685 5.07647 5.14750 5.24864 5.30852 5.47915 5.49698 5.64857 5.80461 5.86690 6.03916 6.17877 6.24450 6.34166 6.51536 6.58867 6.89681 6.92154 6.98447 7.03724 8.36668 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.002259 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.094803 B =12392.576753 C =13521.257489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.601 5.601 3 C 0.074 3.926 4 C 0.565 3.435 5 O -0.577 6.577 6 C 0.038 3.962 7 C -0.091 4.091 8 C -0.106 4.106 9 C 0.127 3.873 10 N -0.647 5.647 11 C 0.566 3.434 12 O -0.558 6.558 13 C -0.144 4.144 14 C -0.179 4.179 15 C -0.101 4.101 16 C -0.200 4.200 17 C 0.063 3.937 18 C -0.500 4.500 19 H 0.082 0.918 20 C 0.026 3.974 21 N -0.841 5.841 22 Si 0.983 3.017 23 H -0.267 1.267 24 H -0.273 1.273 25 H -0.252 1.252 26 C -0.112 4.112 27 C 0.086 3.914 28 N -0.419 5.419 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.134 0.866 37 H 0.433 0.567 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.283 0.717 42 H 0.097 0.903 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 15.331 -6.855 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.332 5.332 3 C -0.067 4.067 4 C 0.352 3.648 5 O -0.457 6.457 6 C -0.100 4.100 7 C -0.113 4.113 8 C -0.134 4.134 9 C 0.029 3.971 10 N -0.294 5.294 11 C 0.358 3.642 12 O -0.437 6.437 13 C -0.148 4.148 14 C -0.198 4.198 15 C -0.119 4.119 16 C -0.219 4.219 17 C 0.061 3.939 18 C -0.531 4.531 19 H 0.100 0.900 20 C -0.187 4.187 21 N -0.469 5.469 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.198 1.198 25 H -0.175 1.175 26 C -0.133 4.133 27 C -0.077 4.077 28 N -0.131 5.131 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.275 0.725 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -14.431 14.762 -6.587 21.669 hybrid contribution 1.118 -1.841 0.546 2.222 sum -13.314 12.921 -6.041 19.511 Atomic orbital electron populations 1.21920 0.77648 1.03720 1.03490 1.47776 1.08124 1.06789 1.70528 1.22500 0.97998 0.82525 1.03684 1.18010 0.86099 0.84023 0.76618 1.90748 1.69472 1.32508 1.53014 1.20910 0.93927 0.90286 1.04832 1.21948 0.93568 0.99608 0.96161 1.21745 0.94265 0.98787 0.98618 1.19259 0.84395 0.95197 0.98275 1.43129 1.03748 1.38240 1.44303 1.18914 0.88115 0.79842 0.77298 1.90720 1.71007 1.34818 1.47146 1.19585 0.90418 1.00910 1.03837 1.20996 0.94936 0.99930 1.03948 1.20995 0.93975 0.98701 0.98205 1.21578 0.99078 1.00289 1.00988 1.17955 0.91540 0.92515 0.91909 1.19810 1.11536 0.95210 1.26549 0.90032 1.26761 0.94982 1.00349 0.96602 1.69844 1.24594 1.17277 1.35144 0.85178 0.79567 0.76844 0.78002 1.19214 1.19762 1.17549 1.21474 0.94331 0.97999 0.99477 1.23380 0.88710 0.97582 0.98035 1.68105 1.08661 1.25735 1.10563 0.91416 0.89872 0.89878 0.91736 0.89713 0.88104 0.83859 0.84850 0.72453 0.83419 0.83819 0.87204 0.90677 0.88469 0.77123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 10.66 127.77 1.36 2.45 16 2 N -0.60 -11.91 3.27 -875.28 -2.87 -14.77 16 3 C 0.07 1.02 9.34 127.77 1.19 2.21 16 4 C 0.56 15.31 7.65 86.80 0.66 15.97 16 5 O -0.58 -19.26 15.67 -3.86 -0.06 -19.32 16 6 C 0.04 0.98 6.62 41.86 0.28 1.26 16 7 C -0.09 -2.63 9.62 22.58 0.22 -2.42 16 8 C -0.11 -3.26 8.78 22.56 0.20 -3.07 16 9 C 0.13 3.27 6.32 38.50 0.24 3.51 16 10 N -0.65 -17.04 5.27 -305.70 -1.61 -18.65 16 11 C 0.57 21.88 7.62 86.79 0.66 22.54 16 12 O -0.56 -26.16 13.79 -3.88 -0.05 -26.21 16 13 C -0.14 -6.07 5.87 -20.13 -0.12 -6.19 16 14 C -0.18 -5.94 9.55 22.70 0.22 -5.72 16 15 C -0.10 -3.50 10.01 22.18 0.22 -3.27 16 16 C -0.20 -8.59 9.78 22.77 0.22 -8.37 16 17 C 0.06 3.24 5.51 -21.32 -0.12 3.12 16 18 C -0.50 -26.44 9.05 23.47 0.21 -26.23 16 19 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 20 C 0.03 1.32 5.30 85.25 0.45 1.77 16 21 N -0.84 -46.20 10.93 21.83 0.24 -45.96 16 22 Si 0.98 39.42 29.56 68.60 2.03 41.45 16 23 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 26 C -0.11 -5.84 8.17 23.01 0.19 -5.65 16 27 C 0.09 1.60 11.12 85.04 0.95 2.55 16 28 N -0.42 -8.75 6.02 -184.41 -1.11 -9.85 16 29 H 0.07 1.29 6.90 -2.39 -0.02 1.27 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.72 8.03 -2.38 -0.02 0.70 16 34 H 0.10 1.60 5.26 -2.78 -0.01 1.59 16 35 H 0.14 4.15 7.65 -2.91 -0.02 4.13 16 36 H 0.13 4.83 6.30 -2.91 -0.02 4.81 16 37 H 0.43 7.78 6.85 -92.71 -0.64 7.14 16 38 H 0.15 3.23 6.39 -2.91 -0.02 3.21 16 39 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.28 14.46 8.30 -92.71 -0.77 13.70 16 42 H 0.10 5.75 5.99 -2.91 -0.02 5.73 16 43 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -72.68 364.93 4.04 -68.63 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.44 Total: 30.23 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 7.04 Total: -5.54 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -5.35 Total: -89.24 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -0.11 Total: -45.54 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -72.68 4.04 -68.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361506870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.252 kcal (2) G-P(sol) polarization free energy of solvation -72.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds