Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99843 * 2 1 4 4 C 1.34776 * 119.99705 * 179.97438 * 2 1 3 5 5 O 1.21549 * 120.00220 * 0.02562 * 4 2 1 6 6 C 1.47908 * 119.99611 * 179.97438 * 4 2 1 7 7 C 1.39492 * 119.63688 * 179.97438 * 6 4 2 8 8 C 1.38274 * 119.15361 * 179.97438 * 7 6 4 9 9 C 1.39407 * 118.42725 * 359.97438 * 8 7 6 10 10 N 1.39324 * 120.40240 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99660 * 324.98539 * 10 9 8 12 12 O 1.21595 * 120.00307 * 4.32182 * 11 10 9 13 13 C 1.47584 * 119.99769 * 184.32021 * 11 10 9 14 14 C 1.40042 * 119.90063 * 359.73156 * 13 11 10 15 15 C 1.36302 * 120.10252 * 179.72018 * 14 13 11 16 16 C 1.40896 * 119.89730 * 0.54814 * 15 14 13 17 17 C 1.41088 * 120.10319 * 179.70479 * 16 15 14 18 18 H 1.08000 * 120.00011 * 214.76252 * 17 16 15 19 19 C 1.40234 * 120.00191 * 34.75911 * 17 16 15 20 20 N 1.30637 * 119.99938 * 355.66843 * 19 17 16 21 21 Si 1.86799 * 119.99892 * 175.67070 * 19 17 16 22 22 H 1.48493 * 109.47412 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47309 * 120.00328 * 21 19 17 24 24 H 1.48500 * 109.46680 * 239.99730 * 21 19 17 25 25 C 1.40902 * 119.79676 * 359.72298 * 16 15 14 26 26 C 1.36302 * 119.89397 * 359.97438 * 25 16 15 27 27 C 1.39411 * 119.20129 * 0.02562 * 9 8 7 28 28 N 1.31345 * 120.78526 * 359.97438 * 27 9 8 29 29 H 1.09000 * 109.46956 * 270.00356 * 1 2 3 30 30 H 1.09008 * 109.46979 * 29.99915 * 1 2 3 31 31 H 1.08994 * 109.47534 * 150.00078 * 1 2 3 32 32 H 1.08996 * 109.46774 * 239.99808 * 3 2 1 33 33 H 1.08995 * 109.47336 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.46858 * 120.00378 * 3 2 1 35 35 H 1.08000 * 120.42783 * 0.25684 * 7 6 4 36 36 H 1.07996 * 120.78896 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00638 * 144.98714 * 10 9 8 38 38 H 1.08000 * 119.94110 * 359.97201 * 14 13 11 39 39 H 1.08002 * 120.04800 * 180.27179 * 15 14 13 40 40 H 0.97001 * 120.00498 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.05287 * 179.97438 * 25 16 15 42 42 H 1.07999 * 119.95093 * 179.97438 * 26 25 16 43 43 H 1.08004 * 119.60809 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5311 -2.2199 0.0005 6 6 3.6179 -1.1672 -0.0001 7 6 4.3077 -2.3796 0.0010 8 6 5.6904 -2.3679 -0.0001 9 6 6.3437 -1.1364 -0.0028 10 7 7.7356 -1.0766 -0.0045 11 6 8.4506 -2.0018 0.6659 12 8 7.8853 -2.9328 1.2064 13 6 9.9198 -1.8848 0.7439 14 6 10.5692 -0.8147 0.1159 15 6 11.9253 -0.6995 0.1901 16 6 12.6749 -1.6654 0.8903 17 6 14.0794 -1.5538 0.9646 18 1 14.6925 -2.4429 0.9644 19 6 14.6793 -0.2884 1.0387 20 7 13.9449 0.7886 0.9538 21 14 16.5286 -0.1430 1.2589 22 1 17.1272 -1.5002 1.3277 23 1 17.1075 0.5961 0.1083 24 1 16.8211 0.5908 2.5163 25 6 12.0176 -2.7434 1.5158 26 6 10.6606 -2.8470 1.4415 27 6 5.5873 0.0347 -0.0037 28 7 4.2747 -0.0127 -0.0026 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 2.8241 1.3264 -0.8899 33 1 1.4892 2.0972 -0.0005 34 1 2.8242 1.3264 0.8900 35 1 3.7688 -3.3155 -0.0019 36 1 6.2510 -3.2910 0.0003 37 1 8.1902 -0.3692 -0.4881 38 1 9.9941 -0.0775 -0.4247 39 1 12.4248 0.1285 -0.2909 40 1 14.3598 1.6639 1.0046 41 1 12.5882 -3.4864 2.0533 42 1 10.1559 -3.6731 1.9203 43 1 6.0866 0.9924 -0.0054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361639161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = 3.664331 kcal Electronic energy + Delta-G solvation = -27302.297955 eV Core-core repulsion = 23312.855987 eV Total energy + Delta-G solvation = -3989.441969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01351 -39.84952 -38.66762 -37.33173 -35.77331 -34.86416 -33.97163 -32.26365 -31.05208 -29.88581 -29.63251 -28.07326 -26.70277 -25.93104 -24.13268 -23.44833 -22.04178 -21.11333 -20.37462 -19.84402 -18.10399 -17.63983 -17.38072 -17.04363 -16.44760 -16.01020 -15.61646 -15.55342 -14.98377 -14.60628 -14.38676 -14.15016 -13.88917 -13.84551 -13.39229 -13.32026 -13.09122 -12.95958 -12.83063 -12.68123 -12.50829 -12.25113 -12.01817 -11.96662 -11.69579 -11.36388 -11.08480 -10.84983 -10.67595 -10.37288 -10.15383 -9.78807 -9.74585 -9.70591 -9.54365 -9.10601 -8.85007 -8.29949 -7.90579 -7.59536 -7.02769 -4.78524 0.56841 1.19744 1.94094 2.63028 2.80528 2.83548 2.86072 2.90270 2.95262 3.24399 3.55732 3.69398 3.84846 4.01879 4.43036 4.56633 4.78659 4.90422 4.98923 5.08264 5.11640 5.19522 5.34835 5.52498 5.56244 5.60258 5.65197 5.81458 5.83984 5.94093 6.07085 6.13061 6.26670 6.33265 6.60931 6.71307 6.76033 6.85167 6.97084 7.10041 7.28916 7.38347 7.56023 7.58955 7.72914 7.79212 7.93527 8.00790 8.28072 8.51084 8.58196 8.60214 9.85407 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030942 B = 0.001919 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.707603 B =14584.134851 C =15348.929187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.609 5.609 3 C 0.100 3.900 4 C 0.575 3.425 5 O -0.541 6.541 6 C 0.034 3.966 7 C -0.083 4.083 8 C -0.096 4.096 9 C 0.147 3.853 10 N -0.675 5.675 11 C 0.571 3.429 12 O -0.550 6.550 13 C -0.279 4.279 14 C -0.067 4.067 15 C -0.165 4.165 16 C 0.127 3.873 17 C -0.442 4.442 18 H 0.085 0.915 19 C 0.069 3.931 20 N -0.787 5.787 21 Si 0.922 3.078 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.227 4.227 26 C -0.024 4.024 27 C 0.059 3.941 28 N -0.432 5.432 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.414 0.586 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.285 0.715 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.302 4.970 -3.943 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.341 5.341 3 C -0.043 4.043 4 C 0.363 3.637 5 O -0.418 6.418 6 C -0.104 4.104 7 C -0.104 4.104 8 C -0.124 4.124 9 C 0.047 3.953 10 N -0.320 5.320 11 C 0.368 3.632 12 O -0.430 6.430 13 C -0.284 4.284 14 C -0.087 4.087 15 C -0.184 4.184 16 C 0.124 3.876 17 C -0.470 4.470 18 H 0.103 0.897 19 C -0.150 4.150 20 N -0.411 5.411 21 Si 0.746 3.254 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.247 4.247 26 C -0.044 4.044 27 C -0.104 4.104 28 N -0.144 5.144 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.165 0.835 36 H 0.176 0.824 37 H 0.252 0.748 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.096 0.904 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.428 4.793 -3.537 16.538 hybrid contribution 1.597 0.030 0.011 1.598 sum -13.831 4.823 -3.526 15.066 Atomic orbital electron populations 1.21700 0.79043 1.03132 1.01905 1.47610 1.06942 1.06943 1.72637 1.21988 0.95605 0.82809 1.03876 1.17868 0.86009 0.83419 0.76389 1.90769 1.69032 1.31050 1.50900 1.20790 0.93645 0.89910 1.06041 1.21979 0.93891 0.99061 0.95493 1.21848 0.93731 0.98828 0.97953 1.19136 0.84974 0.94983 0.96247 1.43566 1.03144 1.32718 1.52582 1.18854 0.88235 0.80169 0.75920 1.90660 1.72344 1.32607 1.47352 1.18787 0.89028 1.03691 1.16850 1.20548 0.95428 0.95077 0.97614 1.21280 0.92255 1.02396 1.02512 1.17908 0.93627 0.89974 0.86130 1.19878 0.92107 0.93303 1.41728 0.89682 1.26098 1.01416 0.95248 0.92285 1.69658 1.37901 0.99412 1.34162 0.86021 0.80741 0.79808 0.78877 1.18170 1.19545 1.19564 1.20867 0.93344 1.03177 1.07303 1.20388 0.93749 0.95618 0.94601 1.22700 0.89167 0.97290 1.01249 1.67939 1.08896 1.27709 1.09833 0.92669 0.91099 0.90529 0.90938 0.92218 0.90929 0.83517 0.82415 0.74786 0.89117 0.84923 0.90361 0.88014 0.87820 0.81839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.41 59.85 0.62 1.32 16 2 N -0.61 -6.62 3.27 -190.62 -0.62 -7.25 16 3 C 0.10 0.86 8.99 59.85 0.54 1.40 16 4 C 0.58 7.97 7.66 -12.30 -0.09 7.88 16 5 O -0.54 -8.80 15.89 5.32 0.08 -8.72 16 6 C 0.03 0.47 6.68 -83.01 -0.55 -0.08 16 7 C -0.08 -1.15 9.62 -39.10 -0.38 -1.53 16 8 C -0.10 -1.42 8.78 -39.13 -0.34 -1.76 16 9 C 0.15 2.06 6.32 -83.58 -0.53 1.53 16 10 N -0.68 -9.96 5.27 -10.67 -0.06 -10.02 16 11 C 0.57 10.76 7.61 -12.45 -0.09 10.67 16 12 O -0.55 -11.57 13.79 5.28 0.07 -11.49 16 13 C -0.28 -5.73 5.89 -104.73 -0.62 -6.35 16 14 C -0.07 -1.34 9.47 -39.60 -0.38 -1.72 16 15 C -0.17 -3.74 8.61 -39.27 -0.34 -4.08 16 16 C 0.13 3.03 5.55 -106.80 -0.59 2.43 16 17 C -0.44 -10.42 9.03 -37.75 -0.34 -10.76 16 18 H 0.09 1.92 7.85 -52.49 -0.41 1.51 16 19 C 0.07 1.53 5.42 -17.31 -0.09 1.44 16 20 N -0.79 -17.96 10.59 55.56 0.59 -17.37 16 21 Si 0.92 16.73 29.56 -169.99 -5.03 11.70 16 22 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 23 H -0.27 -4.82 7.11 56.52 0.40 -4.41 16 24 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 25 C -0.23 -5.11 9.73 -39.27 -0.38 -5.49 16 26 C -0.02 -0.53 9.52 -39.60 -0.38 -0.90 16 27 C 0.06 0.70 11.12 -17.32 -0.19 0.51 16 28 N -0.43 -5.31 5.92 -9.63 -0.06 -5.36 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.40 7.92 -51.92 -0.41 -0.02 16 31 H 0.08 0.71 7.42 -51.93 -0.39 0.32 16 32 H 0.07 0.65 7.05 -51.93 -0.37 0.29 16 33 H 0.06 0.36 7.79 -51.93 -0.40 -0.04 16 34 H 0.07 0.69 7.05 -51.93 -0.37 0.32 16 35 H 0.15 1.92 7.63 -52.49 -0.40 1.52 16 36 H 0.16 2.53 6.31 -52.49 -0.33 2.20 16 37 H 0.41 5.06 6.83 -40.82 -0.28 4.78 16 38 H 0.09 1.46 6.38 -52.49 -0.33 1.12 16 39 H 0.13 3.09 6.13 -52.49 -0.32 2.76 16 40 H 0.29 5.87 8.29 -40.82 -0.34 5.54 16 41 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 42 H 0.10 2.15 7.63 -52.49 -0.40 1.75 16 43 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -28.39 364.58 -8.48 -36.87 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -4.82 Total: 11.63 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -4.14 Total: -5.49 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: -0.15 Total: -40.00 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.16 Total: -20.21 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.39 -8.48 -36.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361639161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.539 kcal (2) G-P(sol) polarization free energy of solvation -28.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds