Wall clock time and date at job start Sat Apr 11 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99843 * 2 1 4 4 C 1.34776 * 119.99705 * 179.97438 * 2 1 3 5 5 O 1.21549 * 120.00220 * 0.02562 * 4 2 1 6 6 C 1.47908 * 119.99611 * 179.97438 * 4 2 1 7 7 C 1.39492 * 119.63688 * 179.97438 * 6 4 2 8 8 C 1.38274 * 119.15361 * 179.97438 * 7 6 4 9 9 C 1.39407 * 118.42725 * 359.97438 * 8 7 6 10 10 N 1.39324 * 120.40240 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99660 * 324.98539 * 10 9 8 12 12 O 1.21595 * 120.00307 * 4.32182 * 11 10 9 13 13 C 1.47584 * 119.99769 * 184.32021 * 11 10 9 14 14 C 1.40042 * 119.90063 * 359.73156 * 13 11 10 15 15 C 1.36302 * 120.10252 * 179.72018 * 14 13 11 16 16 C 1.40896 * 119.89730 * 0.54814 * 15 14 13 17 17 C 1.41088 * 120.10319 * 179.70479 * 16 15 14 18 18 H 1.08000 * 120.00011 * 214.76252 * 17 16 15 19 19 C 1.40234 * 120.00191 * 34.75911 * 17 16 15 20 20 N 1.30637 * 119.99938 * 355.66843 * 19 17 16 21 21 Si 1.86799 * 119.99892 * 175.67070 * 19 17 16 22 22 H 1.48493 * 109.47412 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47309 * 120.00328 * 21 19 17 24 24 H 1.48500 * 109.46680 * 239.99730 * 21 19 17 25 25 C 1.40902 * 119.79676 * 359.72298 * 16 15 14 26 26 C 1.36302 * 119.89397 * 359.97438 * 25 16 15 27 27 C 1.39411 * 119.20129 * 0.02562 * 9 8 7 28 28 N 1.31345 * 120.78526 * 359.97438 * 27 9 8 29 29 H 1.09000 * 109.46956 * 270.00356 * 1 2 3 30 30 H 1.09008 * 109.46979 * 29.99915 * 1 2 3 31 31 H 1.08994 * 109.47534 * 150.00078 * 1 2 3 32 32 H 1.08996 * 109.46774 * 239.99808 * 3 2 1 33 33 H 1.08995 * 109.47336 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.46858 * 120.00378 * 3 2 1 35 35 H 1.08000 * 120.42783 * 0.25684 * 7 6 4 36 36 H 1.07996 * 120.78896 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00638 * 144.98714 * 10 9 8 38 38 H 1.08000 * 119.94110 * 359.97201 * 14 13 11 39 39 H 1.08002 * 120.04800 * 180.27179 * 15 14 13 40 40 H 0.97001 * 120.00498 * 180.02562 * 20 19 17 41 41 H 1.07998 * 120.05287 * 179.97438 * 25 16 15 42 42 H 1.07999 * 119.95093 * 179.97438 * 26 25 16 43 43 H 1.08004 * 119.60809 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5311 -2.2199 0.0005 6 6 3.6179 -1.1672 -0.0001 7 6 4.3077 -2.3796 0.0010 8 6 5.6904 -2.3679 -0.0001 9 6 6.3437 -1.1364 -0.0028 10 7 7.7356 -1.0766 -0.0045 11 6 8.4506 -2.0018 0.6659 12 8 7.8853 -2.9328 1.2064 13 6 9.9198 -1.8848 0.7439 14 6 10.5692 -0.8147 0.1159 15 6 11.9253 -0.6995 0.1901 16 6 12.6749 -1.6654 0.8903 17 6 14.0794 -1.5538 0.9646 18 1 14.6925 -2.4429 0.9644 19 6 14.6793 -0.2884 1.0387 20 7 13.9449 0.7886 0.9538 21 14 16.5286 -0.1430 1.2589 22 1 17.1272 -1.5002 1.3277 23 1 17.1075 0.5961 0.1083 24 1 16.8211 0.5908 2.5163 25 6 12.0176 -2.7434 1.5158 26 6 10.6606 -2.8470 1.4415 27 6 5.5873 0.0347 -0.0037 28 7 4.2747 -0.0127 -0.0026 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3634 -0.8899 -0.5138 32 1 2.8241 1.3264 -0.8899 33 1 1.4892 2.0972 -0.0005 34 1 2.8242 1.3264 0.8900 35 1 3.7688 -3.3155 -0.0019 36 1 6.2510 -3.2910 0.0003 37 1 8.1902 -0.3692 -0.4881 38 1 9.9941 -0.0775 -0.4247 39 1 12.4248 0.1285 -0.2909 40 1 14.3598 1.6639 1.0046 41 1 12.5882 -3.4864 2.0533 42 1 10.1559 -3.6731 1.9203 43 1 6.0866 0.9924 -0.0054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361639161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:46 Heat of formation + Delta-G solvation = -11.833343 kcal Electronic energy + Delta-G solvation = -27302.969985 eV Core-core repulsion = 23312.855987 eV Total energy + Delta-G solvation = -3990.113998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14638 -41.09905 -39.89878 -38.92537 -36.71851 -36.17832 -35.63595 -33.37242 -32.44911 -31.34416 -31.20494 -28.87138 -27.94071 -27.18467 -25.25920 -24.58748 -23.50732 -22.77369 -21.60443 -21.08032 -19.47651 -19.24679 -18.43224 -18.18587 -17.70026 -17.18682 -16.93016 -16.62026 -16.14297 -16.02549 -15.78410 -15.57334 -15.05980 -14.92158 -14.84165 -14.57001 -14.36475 -14.08812 -14.00158 -13.72681 -13.65658 -13.38534 -13.34486 -13.26784 -12.85373 -12.73037 -12.63047 -12.39288 -11.97854 -11.74676 -11.46406 -11.39784 -11.23624 -11.05331 -10.83012 -10.34015 -9.75602 -9.61319 -9.48220 -9.24281 -8.67470 -6.53926 -0.55467 0.13372 0.34535 1.12559 1.39198 1.41586 1.55149 1.57228 1.90016 2.00278 2.07706 2.18952 2.71805 2.80870 3.04537 3.59977 3.62209 3.72165 3.81679 3.94728 4.22930 4.29135 4.35473 4.41690 4.46652 4.56425 4.58442 4.79183 4.90858 4.92049 4.92659 4.97060 5.05105 5.09084 5.13377 5.21451 5.28924 5.52676 5.59469 5.62920 5.76003 5.89593 6.01118 6.19260 6.23293 6.39187 6.55990 6.56434 6.79311 6.86614 7.00467 7.15065 8.23363 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030942 B = 0.001919 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.707603 B =14584.134851 C =15348.929187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.603 5.603 3 C 0.097 3.903 4 C 0.565 3.435 5 O -0.576 6.576 6 C 0.032 3.968 7 C -0.090 4.090 8 C -0.105 4.105 9 C 0.130 3.870 10 N -0.657 5.657 11 C 0.575 3.425 12 O -0.575 6.575 13 C -0.280 4.280 14 C -0.055 4.055 15 C -0.185 4.185 16 C 0.099 3.901 17 C -0.476 4.476 18 H 0.082 0.918 19 C 0.033 3.967 20 N -0.813 5.813 21 Si 0.990 3.010 22 H -0.259 1.259 23 H -0.261 1.261 24 H -0.267 1.267 25 C -0.240 4.240 26 C -0.036 4.036 27 C 0.079 3.921 28 N -0.422 5.422 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.428 0.572 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.293 0.707 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.330 7.576 -4.444 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.334 5.334 3 C -0.045 4.045 4 C 0.352 3.648 5 O -0.456 6.456 6 C -0.105 4.105 7 C -0.111 4.111 8 C -0.132 4.132 9 C 0.031 3.969 10 N -0.303 5.303 11 C 0.371 3.629 12 O -0.456 6.456 13 C -0.284 4.284 14 C -0.074 4.074 15 C -0.205 4.205 16 C 0.096 3.904 17 C -0.505 4.505 18 H 0.100 0.900 19 C -0.184 4.184 20 N -0.438 5.438 21 Si 0.810 3.190 22 H -0.183 1.183 23 H -0.186 1.186 24 H -0.192 1.192 25 C -0.260 4.260 26 C -0.056 4.056 27 C -0.085 4.085 28 N -0.133 5.133 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.269 0.731 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -16.505 7.455 -4.063 18.561 hybrid contribution 1.670 -0.751 0.149 1.838 sum -14.835 6.704 -3.914 16.743 Atomic orbital electron populations 1.21907 0.77440 1.04128 1.02729 1.47806 1.08156 1.06783 1.70641 1.22117 0.96387 0.82565 1.03399 1.17999 0.86112 0.83958 0.76694 1.90747 1.69557 1.32404 1.52877 1.20924 0.93972 0.90154 1.05489 1.21975 0.93594 0.99553 0.96003 1.21749 0.94052 0.98820 0.98626 1.19265 0.84444 0.95529 0.97629 1.43194 1.03454 1.31936 1.51693 1.18570 0.87668 0.80529 0.76112 1.90663 1.72610 1.33811 1.48538 1.19050 0.90257 1.03258 1.15853 1.20855 0.94718 0.95259 0.96581 1.21297 0.93437 1.02396 1.03332 1.18249 0.94372 0.90890 0.86928 1.20077 0.92412 0.94129 1.43833 0.89980 1.26859 1.05520 0.94475 0.91505 1.69687 1.39594 0.99975 1.34504 0.85016 0.75375 0.79592 0.78971 1.18277 1.18588 1.19211 1.20985 0.93883 1.03341 1.07755 1.20547 0.93646 0.96285 0.95078 1.23251 0.88772 0.97867 0.98595 1.68096 1.08929 1.26672 1.09636 0.91902 0.87712 0.91942 0.91054 0.88942 0.91566 0.83594 0.84136 0.73085 0.84905 0.85767 0.89554 0.87649 0.87536 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.41 127.77 1.33 2.46 16 2 N -0.60 -11.80 3.27 -875.28 -2.87 -14.66 16 3 C 0.10 1.35 8.99 127.77 1.15 2.49 16 4 C 0.56 15.14 7.66 86.81 0.66 15.80 16 5 O -0.58 -18.84 15.89 -3.87 -0.06 -18.90 16 6 C 0.03 0.84 6.68 41.86 0.28 1.12 16 7 C -0.09 -2.48 9.62 22.58 0.22 -2.27 16 8 C -0.10 -3.05 8.78 22.56 0.20 -2.85 16 9 C 0.13 3.39 6.32 38.52 0.24 3.63 16 10 N -0.66 -17.83 5.27 -305.92 -1.61 -19.44 16 11 C 0.58 21.04 7.61 86.71 0.66 21.70 16 12 O -0.57 -24.08 13.79 -4.01 -0.06 -24.14 16 13 C -0.28 -11.29 5.89 -19.93 -0.12 -11.41 16 14 C -0.06 -2.13 9.47 22.26 0.21 -1.92 16 15 C -0.19 -8.43 8.61 22.47 0.19 -8.24 16 16 C 0.10 4.83 5.55 -21.28 -0.12 4.71 16 17 C -0.48 -23.08 9.03 23.45 0.21 -22.87 16 18 H 0.08 3.85 7.85 -2.91 -0.02 3.83 16 19 C 0.03 1.47 5.42 85.36 0.46 1.94 16 20 N -0.81 -37.23 10.59 21.87 0.23 -37.00 16 21 Si 0.99 34.16 29.56 68.60 2.03 36.19 16 22 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 23 H -0.26 -8.57 7.11 99.48 0.71 -7.86 16 24 H -0.27 -9.01 7.11 99.48 0.71 -8.30 16 25 C -0.24 -11.11 9.73 22.47 0.22 -10.89 16 26 C -0.04 -1.59 9.52 22.26 0.21 -1.38 16 27 C 0.08 1.60 11.12 85.05 0.95 2.54 16 28 N -0.42 -9.22 5.92 -184.39 -1.09 -10.32 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.78 7.92 -2.38 -0.02 0.76 16 31 H 0.06 1.09 7.42 -2.39 -0.02 1.07 16 32 H 0.07 1.04 7.05 -2.39 -0.02 1.02 16 33 H 0.09 0.71 7.79 -2.39 -0.02 0.69 16 34 H 0.07 1.04 7.05 -2.39 -0.02 1.02 16 35 H 0.15 3.97 7.63 -2.91 -0.02 3.94 16 36 H 0.14 4.60 6.31 -2.91 -0.02 4.58 16 37 H 0.43 8.95 6.83 -92.71 -0.63 8.32 16 38 H 0.13 3.85 6.38 -2.91 -0.02 3.83 16 39 H 0.12 5.83 6.13 -2.91 -0.02 5.81 16 40 H 0.29 12.00 8.29 -92.71 -0.77 11.24 16 41 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 42 H 0.11 4.52 7.63 -2.91 -0.02 4.50 16 43 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -63.48 364.58 3.98 -59.50 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.44 Total: 34.19 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 6.96 Total: -5.43 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -5.34 Total: -81.42 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -0.12 Total: -43.04 kcal Atomic # 14 Polarization: 34.16 SS G_CDS: 2.03 Total: 36.19 kcal Total: -63.48 3.98 -59.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361639161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.672 kcal (2) G-P(sol) polarization free energy of solvation -63.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds