Wall clock time and date at job start Sat Apr 11 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99903 * 2 1 4 4 C 1.53237 * 109.36261 * 187.23857 * 3 2 1 5 5 N 1.47086 * 108.51737 * 306.20875 * 4 3 2 6 6 S 1.65601 * 120.86100 * 231.11909 * 5 4 3 7 7 O 1.42097 * 106.40143 * 23.56444 * 6 5 4 8 8 O 1.42104 * 106.39925 * 156.47970 * 6 5 4 9 9 N 1.65596 * 107.21637 * 270.02010 * 6 5 4 10 10 C 1.46495 * 120.00104 * 65.00250 * 9 6 5 11 11 C 1.50700 * 109.47448 * 164.99781 * 10 9 6 12 12 C 1.38634 * 119.74794 * 269.73231 * 11 10 9 13 13 C 1.37627 * 120.24649 * 179.72280 * 12 11 10 14 14 C 1.40716 * 119.74173 * 0.55885 * 13 12 11 15 15 C 1.41397 * 120.23753 * 179.68457 * 14 13 12 16 16 H 1.07997 * 119.99561 * 155.31887 * 15 14 13 17 17 C 1.39939 * 120.00328 * 335.31187 * 15 14 13 18 18 N 1.30822 * 120.00377 * 342.23824 * 17 15 14 19 19 Si 1.86808 * 119.99911 * 162.23289 * 17 15 14 20 20 H 1.48497 * 109.46904 * 94.66705 * 19 17 15 21 21 H 1.48496 * 109.47149 * 214.66485 * 19 17 15 22 22 H 1.48501 * 109.47145 * 334.66781 * 19 17 15 23 23 C 1.40709 * 119.51147 * 359.71130 * 14 13 12 24 24 C 1.37614 * 119.74704 * 359.97438 * 23 14 13 25 25 C 1.47077 * 118.25715 * 51.13749 * 5 4 3 26 26 C 1.46902 * 110.99659 * 124.29641 * 2 1 3 27 27 H 1.09001 * 109.46849 * 60.00372 * 1 2 3 28 28 H 1.08999 * 109.46621 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47402 * 300.00631 * 1 2 3 30 30 H 1.09011 * 109.49323 * 307.21029 * 3 2 1 31 31 H 1.09000 * 109.49679 * 67.26086 * 3 2 1 32 32 H 1.08996 * 109.62825 * 65.88899 * 4 3 2 33 33 H 1.09001 * 109.63062 * 186.47278 * 4 3 2 34 34 H 0.97002 * 119.99658 * 244.99339 * 9 6 5 35 35 H 1.09000 * 109.47266 * 285.00060 * 10 9 6 36 36 H 1.09002 * 109.47382 * 44.99311 * 10 9 6 37 37 H 1.07997 * 119.87810 * 359.96763 * 12 11 10 38 38 H 1.07996 * 120.12519 * 180.27597 * 13 12 11 39 39 H 0.97001 * 120.00436 * 179.97438 * 18 17 15 40 40 H 1.08008 * 120.12466 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.87243 * 179.97438 * 24 23 14 42 42 H 1.09005 * 109.63121 * 189.12264 * 25 5 4 43 43 H 1.09003 * 109.63309 * 68.54592 * 25 5 4 44 44 H 1.09000 * 109.49411 * 292.71028 * 26 2 1 45 45 H 1.09000 * 109.49180 * 52.75934 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5165 1.3318 -0.1822 5 7 4.0870 0.4461 0.8443 6 16 5.3391 0.9524 1.8024 7 8 5.2859 2.3723 1.8152 8 8 5.2865 0.1621 2.9823 9 7 6.7449 0.5439 1.0283 10 6 7.0830 1.1674 -0.2535 11 6 8.5375 0.9227 -0.5630 12 6 9.4938 1.8314 -0.1368 13 6 10.8255 1.6152 -0.4089 14 6 11.2135 0.4726 -1.1327 15 6 12.5781 0.2436 -1.4238 16 1 12.9303 -0.7612 -1.6050 17 6 13.4722 1.3187 -1.4774 18 7 13.0203 2.5396 -1.6070 19 14 15.3112 1.0107 -1.3637 20 1 15.8829 0.9176 -2.7310 21 1 15.9564 2.1307 -0.6326 22 1 15.5561 -0.2610 -0.6371 23 6 10.2336 -0.4399 -1.5651 24 6 8.9085 -0.2067 -1.2760 25 6 3.5164 -0.9008 0.9969 26 6 1.9954 -0.7728 1.1330 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.5457 1.9337 -0.8184 31 1 1.7551 1.8534 0.9476 32 1 3.7566 0.9458 -1.1728 33 1 3.9252 2.3358 -0.0683 34 1 7.3444 -0.1081 1.4236 35 1 6.4662 0.7356 -1.0416 36 1 6.8994 2.2403 -0.1954 37 1 9.1931 2.7103 0.4142 38 1 11.5692 2.3221 -0.0721 39 1 13.6401 3.2849 -1.6437 40 1 10.5203 -1.3200 -2.1217 41 1 8.1546 -0.9056 -1.6073 42 1 3.9255 -1.3728 1.8903 43 1 3.7562 -1.5017 0.1197 44 1 1.7554 -0.2612 2.0651 45 1 1.5452 -1.7655 1.1367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365424743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:12 Heat of formation + Delta-G solvation = -50.746650 kcal Electronic energy + Delta-G solvation = -27251.694869 eV Core-core repulsion = 23395.337415 eV Total energy + Delta-G solvation = -3856.357454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.13076 -37.87532 -37.16757 -35.74109 -35.06092 -34.79315 -33.36897 -31.41949 -30.05950 -29.33146 -28.29544 -26.56522 -24.20276 -24.11026 -23.54542 -21.07412 -20.94397 -20.15710 -19.22540 -17.91574 -17.38253 -17.32720 -16.30942 -15.57649 -15.46507 -15.29520 -15.18380 -15.12524 -14.44318 -14.40174 -14.00756 -13.98937 -13.62079 -13.06883 -12.74397 -12.58651 -12.42529 -12.40932 -12.18958 -12.15621 -12.06731 -11.99660 -11.94248 -11.62045 -11.53737 -11.31238 -11.15472 -11.04700 -10.98851 -10.61818 -10.49003 -9.74603 -9.48981 -9.39087 -9.22924 -9.11900 -8.62916 -7.55428 -7.43849 -6.85586 -4.44766 0.66793 2.58932 2.92625 2.99547 3.03005 3.07150 3.16867 3.58329 3.68432 3.86474 4.34528 4.46014 4.53935 4.70063 4.83581 4.92075 5.06571 5.13102 5.21689 5.23453 5.36331 5.42039 5.44194 5.51870 5.58855 5.63496 5.73218 5.80159 5.86216 6.06435 6.23872 6.30653 6.34982 6.46744 6.68011 6.68562 6.88270 6.98605 7.18564 7.25500 7.33700 7.52464 7.76253 7.96892 8.02383 8.20652 8.55225 8.79990 8.87848 10.08527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.002299 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.389899 B =12177.805684 C =12374.292945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.542 5.542 3 C 0.044 3.956 4 C 0.122 3.878 5 N -1.010 6.010 6 S 2.782 3.218 7 O -0.980 6.980 8 O -0.987 6.987 9 N -1.116 6.116 10 C 0.184 3.816 11 C -0.234 4.234 12 C -0.081 4.081 13 C -0.169 4.169 14 C 0.116 3.884 15 C -0.458 4.458 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.787 5.787 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.230 4.230 24 C -0.071 4.071 25 C 0.125 3.875 26 C 0.044 3.956 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.417 0.583 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.282 0.718 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.332 -3.528 2.136 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.085 4.085 4 C -0.004 4.004 5 N -0.850 5.850 6 S 2.791 3.209 7 O -0.964 6.964 8 O -0.971 6.971 9 N -0.879 5.879 10 C 0.060 3.940 11 C -0.238 4.238 12 C -0.101 4.101 13 C -0.188 4.188 14 C 0.113 3.887 15 C -0.487 4.487 16 H 0.097 0.903 17 C -0.143 4.143 18 N -0.412 5.412 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.249 4.249 24 C -0.090 4.090 25 C -0.001 4.001 26 C -0.086 4.086 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.251 0.749 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.057 0.943 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.317 -2.895 2.445 19.685 hybrid contribution 0.837 -0.113 0.444 0.954 sum -18.480 -3.007 2.889 18.945 Atomic orbital electron populations 1.22366 0.87037 1.02148 1.00713 1.61883 1.07715 1.13759 1.43281 1.22444 0.95488 0.89346 1.01264 1.21557 0.92699 0.94390 0.91780 1.58216 1.50823 1.23234 1.52724 1.01926 0.72609 0.73582 0.72765 1.93587 1.86520 1.29784 1.86479 1.93579 1.86691 1.71497 1.45374 1.56122 1.38104 1.58086 1.35546 1.19867 0.95412 0.96239 0.82466 1.18868 0.92275 1.00142 1.12480 1.20590 0.93590 0.97054 0.98825 1.21320 0.94346 1.00675 1.02504 1.17671 0.92743 0.90689 0.87595 1.19644 0.92701 0.94508 1.41888 0.90308 1.25951 1.01776 0.94540 0.92068 1.69820 1.37661 1.00023 1.33685 0.86299 0.81723 0.79490 0.79254 1.19508 1.19960 1.18368 1.20959 0.92539 1.02868 1.08575 1.20377 0.95345 0.95537 0.97787 1.21493 0.92627 0.82983 1.02995 1.22448 0.95500 0.98797 0.91840 0.91193 0.91267 0.95715 0.89486 0.94284 0.90408 0.88438 0.74879 0.92851 0.91488 0.89250 0.86419 0.90695 0.88940 0.89369 0.88618 0.90514 0.94314 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.58 60.07 0.58 0.75 16 2 N -0.54 -4.74 4.88 -242.60 -1.18 -5.93 16 3 C 0.04 0.39 5.62 -3.70 -0.02 0.37 16 4 C 0.12 1.22 6.67 -3.60 -0.02 1.19 16 5 N -1.01 -11.44 3.39 -113.23 -0.38 -11.83 16 6 S 2.78 39.88 6.20 -107.50 -0.67 39.22 16 7 O -0.98 -16.71 16.22 -57.17 -0.93 -17.64 16 8 O -0.99 -16.23 16.75 -57.17 -0.96 -17.19 16 9 N -1.12 -16.47 6.05 -11.66 -0.07 -16.54 16 10 C 0.18 2.97 6.36 -5.20 -0.03 2.93 16 11 C -0.23 -4.72 5.30 -104.33 -0.55 -5.28 16 12 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 13 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 14 C 0.12 2.98 5.57 -106.83 -0.60 2.38 16 15 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 16 16 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 17 C 0.08 1.84 5.14 -17.35 -0.09 1.75 16 18 N -0.79 -19.81 10.97 55.55 0.61 -19.20 16 19 Si 0.91 18.15 29.60 -169.99 -5.03 13.12 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 23 C -0.23 -5.36 9.80 -38.88 -0.38 -5.74 16 24 C -0.07 -1.48 9.67 -39.66 -0.38 -1.86 16 25 C 0.12 1.21 6.66 -3.60 -0.02 1.19 16 26 C 0.04 0.38 5.62 -3.70 -0.02 0.36 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.63 8.11 -51.92 -0.42 0.20 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.01 6.93 -51.93 -0.36 0.65 16 34 H 0.42 6.11 8.64 -34.46 -0.30 5.81 16 35 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.07 1.08 7.69 -51.93 -0.40 0.68 16 37 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.12 3.08 6.18 -52.49 -0.32 2.76 16 39 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 40 H 0.09 2.04 8.06 -52.48 -0.42 1.61 16 41 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 42 H 0.10 0.93 6.93 -51.93 -0.36 0.57 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -30.31 376.69 -12.32 -42.63 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.77 Total: 8.54 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -2.61 Total: -20.86 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -1.03 Total: -53.49 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.88 Total: -34.83 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 39.88 SS G_CDS: -0.67 Total: 39.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.31 -12.32 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365424743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.113 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds