Wall clock time and date at job start Sat Apr 11 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46899 * 110.99903 * 2 1 4 4 C 1.53237 * 109.36261 * 187.23857 * 3 2 1 5 5 N 1.47086 * 108.51737 * 306.20875 * 4 3 2 6 6 S 1.65601 * 120.86100 * 231.11909 * 5 4 3 7 7 O 1.42097 * 106.40143 * 23.56444 * 6 5 4 8 8 O 1.42104 * 106.39925 * 156.47970 * 6 5 4 9 9 N 1.65596 * 107.21637 * 270.02010 * 6 5 4 10 10 C 1.46495 * 120.00104 * 65.00250 * 9 6 5 11 11 C 1.50700 * 109.47448 * 164.99781 * 10 9 6 12 12 C 1.38634 * 119.74794 * 269.73231 * 11 10 9 13 13 C 1.37627 * 120.24649 * 179.72280 * 12 11 10 14 14 C 1.40716 * 119.74173 * 0.55885 * 13 12 11 15 15 C 1.41397 * 120.23753 * 179.68457 * 14 13 12 16 16 H 1.07997 * 119.99561 * 155.31887 * 15 14 13 17 17 C 1.39939 * 120.00328 * 335.31187 * 15 14 13 18 18 N 1.30822 * 120.00377 * 342.23824 * 17 15 14 19 19 Si 1.86808 * 119.99911 * 162.23289 * 17 15 14 20 20 H 1.48497 * 109.46904 * 94.66705 * 19 17 15 21 21 H 1.48496 * 109.47149 * 214.66485 * 19 17 15 22 22 H 1.48501 * 109.47145 * 334.66781 * 19 17 15 23 23 C 1.40709 * 119.51147 * 359.71130 * 14 13 12 24 24 C 1.37614 * 119.74704 * 359.97438 * 23 14 13 25 25 C 1.47077 * 118.25715 * 51.13749 * 5 4 3 26 26 C 1.46902 * 110.99659 * 124.29641 * 2 1 3 27 27 H 1.09001 * 109.46849 * 60.00372 * 1 2 3 28 28 H 1.08999 * 109.46621 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47402 * 300.00631 * 1 2 3 30 30 H 1.09011 * 109.49323 * 307.21029 * 3 2 1 31 31 H 1.09000 * 109.49679 * 67.26086 * 3 2 1 32 32 H 1.08996 * 109.62825 * 65.88899 * 4 3 2 33 33 H 1.09001 * 109.63062 * 186.47278 * 4 3 2 34 34 H 0.97002 * 119.99658 * 244.99339 * 9 6 5 35 35 H 1.09000 * 109.47266 * 285.00060 * 10 9 6 36 36 H 1.09002 * 109.47382 * 44.99311 * 10 9 6 37 37 H 1.07997 * 119.87810 * 359.96763 * 12 11 10 38 38 H 1.07996 * 120.12519 * 180.27597 * 13 12 11 39 39 H 0.97001 * 120.00436 * 179.97438 * 18 17 15 40 40 H 1.08008 * 120.12466 * 179.97438 * 23 14 13 41 41 H 1.08004 * 119.87243 * 179.97438 * 24 23 14 42 42 H 1.09005 * 109.63121 * 189.12264 * 25 5 4 43 43 H 1.09003 * 109.63309 * 68.54592 * 25 5 4 44 44 H 1.09000 * 109.49411 * 292.71028 * 26 2 1 45 45 H 1.09000 * 109.49180 * 52.75934 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5165 1.3318 -0.1822 5 7 4.0870 0.4461 0.8443 6 16 5.3391 0.9524 1.8024 7 8 5.2859 2.3723 1.8152 8 8 5.2865 0.1621 2.9823 9 7 6.7449 0.5439 1.0283 10 6 7.0830 1.1674 -0.2535 11 6 8.5375 0.9227 -0.5630 12 6 9.4938 1.8314 -0.1368 13 6 10.8255 1.6152 -0.4089 14 6 11.2135 0.4726 -1.1327 15 6 12.5781 0.2436 -1.4238 16 1 12.9303 -0.7612 -1.6050 17 6 13.4722 1.3187 -1.4774 18 7 13.0203 2.5396 -1.6070 19 14 15.3112 1.0107 -1.3637 20 1 15.8829 0.9176 -2.7310 21 1 15.9564 2.1307 -0.6326 22 1 15.5561 -0.2610 -0.6371 23 6 10.2336 -0.4399 -1.5651 24 6 8.9085 -0.2067 -1.2760 25 6 3.5164 -0.9008 0.9969 26 6 1.9954 -0.7728 1.1330 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.5457 1.9337 -0.8184 31 1 1.7551 1.8534 0.9476 32 1 3.7566 0.9458 -1.1728 33 1 3.9252 2.3358 -0.0683 34 1 7.3444 -0.1081 1.4236 35 1 6.4662 0.7356 -1.0416 36 1 6.8994 2.2403 -0.1954 37 1 9.1931 2.7103 0.4142 38 1 11.5692 2.3221 -0.0721 39 1 13.6401 3.2849 -1.6437 40 1 10.5203 -1.3200 -2.1217 41 1 8.1546 -0.9056 -1.6073 42 1 3.9255 -1.3728 1.8903 43 1 3.7562 -1.5017 0.1197 44 1 1.7554 -0.2612 2.0651 45 1 1.5452 -1.7655 1.1367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365424743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:11 Heat of formation + Delta-G solvation = -72.438376 kcal Electronic energy + Delta-G solvation = -27252.635493 eV Core-core repulsion = 23395.337415 eV Total energy + Delta-G solvation = -3857.298078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.84015 -39.59324 -38.42505 -36.99517 -36.55675 -35.57229 -35.02334 -32.13695 -31.77014 -31.11762 -28.97090 -28.21052 -25.22939 -24.86727 -24.76739 -22.87294 -21.85998 -21.74270 -20.29317 -19.21953 -18.88582 -18.54536 -17.48414 -17.16114 -16.48316 -16.14596 -15.97022 -15.85132 -15.76312 -15.65683 -15.47080 -15.17094 -15.07649 -14.33635 -13.96634 -13.83319 -13.78939 -13.63566 -13.44143 -13.36116 -13.25508 -13.13792 -13.09947 -12.79179 -12.77746 -12.67121 -12.37712 -12.23190 -12.09330 -12.03573 -11.80991 -11.46675 -11.25665 -11.02067 -10.41219 -10.19212 -9.36594 -9.29615 -9.24159 -8.65553 -6.34773 -0.47749 0.91351 1.16681 1.37936 1.46692 1.53271 1.92921 2.19752 2.50765 2.75151 2.96244 3.28537 3.65166 3.75377 4.04753 4.07026 4.13703 4.24391 4.32478 4.36255 4.44053 4.54716 4.63124 4.67370 4.67677 4.70520 4.72913 4.75958 4.91979 4.97466 5.06040 5.07637 5.10351 5.15359 5.18075 5.38837 5.45350 5.53273 5.71293 5.95220 6.03613 6.08485 6.10780 6.12900 6.23885 6.39039 6.70781 6.93608 7.03478 8.31117 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028010 B = 0.002299 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.389899 B =12177.805684 C =12374.292945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.044 3.956 4 C 0.116 3.884 5 N -1.004 6.004 6 S 2.802 3.198 7 O -1.009 7.009 8 O -1.008 7.008 9 N -1.116 6.116 10 C 0.189 3.811 11 C -0.218 4.218 12 C -0.091 4.091 13 C -0.195 4.195 14 C 0.083 3.917 15 C -0.498 4.498 16 H 0.076 0.924 17 C 0.034 3.966 18 N -0.823 5.823 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.244 4.244 24 C -0.067 4.067 25 C 0.120 3.880 26 C 0.043 3.957 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.022 0.978 30 H 0.105 0.895 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.418 0.582 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.288 0.712 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.028 0.972 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.341 -4.576 1.491 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.086 4.086 4 C -0.010 4.010 5 N -0.846 5.846 6 S 2.812 3.188 7 O -0.992 6.992 8 O -0.993 6.993 9 N -0.878 5.878 10 C 0.064 3.936 11 C -0.221 4.221 12 C -0.110 4.110 13 C -0.215 4.215 14 C 0.080 3.920 15 C -0.527 4.527 16 H 0.095 0.905 17 C -0.181 4.181 18 N -0.448 5.448 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.263 4.263 24 C -0.085 4.085 25 C -0.005 4.005 26 C -0.086 4.086 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.253 0.747 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.144 0.856 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.046 0.954 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.331 -3.948 1.799 21.767 hybrid contribution 1.194 0.190 0.661 1.378 sum -20.137 -3.758 2.460 20.631 Atomic orbital electron populations 1.22420 0.85787 1.02981 1.01057 1.61926 1.08886 1.13431 1.43059 1.22463 0.94773 0.89825 1.01490 1.21745 0.93446 0.93942 0.91827 1.57974 1.49713 1.24236 1.52682 1.01113 0.72640 0.72548 0.72507 1.93549 1.86978 1.31730 1.86955 1.93548 1.87066 1.71850 1.46793 1.55930 1.38758 1.58010 1.35090 1.19850 0.92935 0.96952 0.83830 1.19260 0.94083 0.98689 1.10022 1.20823 0.93151 0.98067 0.98915 1.21262 0.95227 1.00907 1.04070 1.18011 0.93684 0.91716 0.88576 1.19874 0.93691 0.94933 1.44246 0.90548 1.26771 1.06188 0.94000 0.91159 1.69875 1.39336 1.00875 1.34755 0.85220 0.75886 0.79303 0.79483 1.18613 1.19230 1.18281 1.21195 0.93518 1.02792 1.08833 1.20732 0.95050 0.96041 0.96723 1.21692 0.93296 0.82010 1.03546 1.22482 0.94832 0.99838 0.91466 0.90305 0.90239 0.95902 0.87635 0.95375 0.88990 0.88970 0.74723 0.89637 0.91370 0.88249 0.88568 0.90136 0.88308 0.85583 0.88902 0.89124 0.95391 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.58 127.69 1.22 1.49 16 2 N -0.55 -8.04 4.88 -921.45 -4.50 -12.54 16 3 C 0.04 0.68 5.62 86.38 0.49 1.16 16 4 C 0.12 2.02 6.67 86.35 0.58 2.59 16 5 N -1.00 -20.41 3.39 -512.15 -1.73 -22.14 16 6 S 2.80 76.00 6.20 -56.49 -0.35 75.65 16 7 O -1.01 -33.29 16.22 -128.00 -2.08 -35.37 16 8 O -1.01 -32.02 16.75 -128.00 -2.14 -34.16 16 9 N -1.12 -30.53 6.05 -190.80 -1.15 -31.69 16 10 C 0.19 5.55 6.36 85.63 0.54 6.09 16 11 C -0.22 -8.39 5.30 -19.68 -0.10 -8.50 16 12 C -0.09 -4.08 9.67 22.22 0.21 -3.86 16 13 C -0.20 -10.17 8.70 22.73 0.20 -9.97 16 14 C 0.08 4.38 5.57 -21.29 -0.12 4.26 16 15 C -0.50 -26.59 9.05 23.46 0.21 -26.37 16 16 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 17 C 0.03 1.71 5.14 85.26 0.44 2.15 16 18 N -0.82 -42.99 10.97 21.82 0.24 -42.75 16 19 Si 0.98 38.03 29.60 68.60 2.03 40.06 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 23 C -0.24 -11.35 9.80 22.73 0.22 -11.13 16 24 C -0.07 -2.62 9.67 22.22 0.21 -2.40 16 25 C 0.12 2.01 6.66 86.35 0.58 2.59 16 26 C 0.04 0.64 5.62 86.38 0.49 1.13 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 29 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.11 1.21 8.11 -2.38 -0.02 1.20 16 31 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.72 6.93 -2.39 -0.02 1.70 16 34 H 0.42 11.46 8.64 -96.75 -0.84 10.63 16 35 H 0.09 2.02 8.08 -2.39 -0.02 2.00 16 36 H 0.07 2.03 7.69 -2.39 -0.02 2.01 16 37 H 0.10 4.18 8.06 -2.91 -0.02 4.15 16 38 H 0.10 5.33 6.18 -2.91 -0.02 5.31 16 39 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 40 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 42 H 0.09 1.62 6.93 -2.38 -0.02 1.61 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.03 0.47 8.14 -2.39 -0.02 0.46 16 45 H 0.11 1.14 8.06 -2.39 -0.02 1.12 16 Total: -1.00 -66.85 376.69 -4.36 -71.21 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.16 Total: 32.50 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 5.17 Total: -40.78 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -7.15 Total: -109.11 kcal Atomic # 8 Polarization: -65.31 SS G_CDS: -4.22 Total: -69.53 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Atomic # 16 Polarization: 76.00 SS G_CDS: -0.35 Total: 75.65 kcal Total: -66.85 -4.36 -71.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365424743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.224 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds