Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38348 * 127.15380 * 2 1 4 4 C 1.39776 * 126.56657 * 0.02562 * 3 2 1 5 5 H 1.08002 * 119.99962 * 0.26902 * 4 3 2 6 6 C 1.40078 * 119.99736 * 180.26442 * 4 3 2 7 7 N 1.30811 * 120.00351 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99707 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47084 * 59.99718 * 8 6 4 10 10 H 1.48493 * 109.47306 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47136 * 300.00216 * 8 6 4 12 12 N 1.33096 * 106.86947 * 180.22540 * 3 2 1 13 13 N 1.28520 * 109.74695 * 359.78117 * 12 3 2 14 14 C 1.32388 * 110.20170 * 359.97438 * 13 12 3 15 15 S 1.76198 * 126.25764 * 179.97438 * 14 13 12 16 16 C 1.81002 * 99.99878 * 0.02666 * 15 14 13 17 17 C 1.53006 * 109.47089 * 180.02562 * 16 15 14 18 18 H 1.08995 * 109.48645 * 60.03613 * 17 16 15 19 19 C 1.53093 * 109.48589 * 180.09161 * 17 16 15 20 20 C 1.53185 * 109.24918 * 178.04717 * 19 17 16 21 21 C 1.53274 * 108.96544 * 302.52620 * 20 19 17 22 22 C 1.52498 * 109.20795 * 56.04948 * 21 20 19 23 23 C 1.54320 * 109.99795 * 181.78619 * 22 21 20 24 24 C 1.55103 * 101.97169 * 220.83880 * 23 22 21 25 25 O 1.44422 * 103.55710 * 36.61274 * 24 23 22 26 26 C 1.43875 * 106.99444 * 320.23748 * 25 24 23 27 27 O 1.42229 * 110.92161 * 303.91298 * 22 21 20 28 28 H 1.08995 * 109.46769 * 270.17445 * 1 2 3 29 29 H 1.08999 * 109.46681 * 30.17217 * 1 2 3 30 30 H 1.08995 * 109.47055 * 150.16793 * 1 2 3 31 31 H 0.96999 * 119.99911 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47446 * 60.00463 * 16 15 14 33 33 H 1.09001 * 109.47383 * 300.00236 * 16 15 14 34 34 H 1.09007 * 109.50535 * 297.98067 * 19 17 16 35 35 H 1.09004 * 109.50828 * 58.11391 * 19 17 16 36 36 H 1.08998 * 109.55037 * 182.68115 * 20 19 17 37 37 H 1.08998 * 109.63963 * 62.42296 * 20 19 17 38 38 H 1.08997 * 109.51788 * 296.12398 * 21 20 19 39 39 H 1.09001 * 109.51416 * 175.96655 * 21 20 19 40 40 H 1.08997 * 110.92873 * 339.01099 * 23 22 21 41 41 H 1.08996 * 110.92711 * 102.66790 * 23 22 21 42 42 H 1.08997 * 110.60484 * 278.09084 * 24 23 22 43 43 H 1.09004 * 110.73109 * 155.19845 * 24 23 22 44 44 H 1.09002 * 109.90310 * 267.03806 * 26 25 24 45 45 H 1.08999 * 110.05894 * 145.86818 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8596 2.7005 0.0053 6 6 2.8770 3.4567 -0.0052 7 7 4.1477 3.1465 -0.0114 8 14 2.3533 5.2498 -0.0038 9 1 1.5487 5.5296 1.2127 10 1 3.5584 6.1175 -0.0099 11 1 1.5363 5.5279 -1.2123 12 7 3.5490 0.6412 -0.0050 13 7 3.5370 -0.6439 -0.0034 14 6 2.2903 -1.0894 0.0032 15 16 1.7872 -2.7780 0.0071 16 6 3.4057 -3.5882 0.0004 17 6 3.2161 -5.1065 0.0020 18 1 2.6578 -5.4041 -0.8856 19 6 4.5849 -5.7921 -0.0014 20 6 4.3892 -7.3106 0.0495 21 6 3.5748 -7.6663 1.2983 22 6 2.2596 -6.8948 1.2762 23 6 1.4440 -7.2055 2.5489 24 6 0.0037 -7.3272 1.9862 25 8 0.1942 -7.9602 0.7022 26 6 1.3744 -7.3802 0.1184 27 8 2.4932 -5.4956 1.1731 28 1 -0.3633 0.0031 1.0276 29 1 -0.3633 0.8885 -0.5165 30 1 -0.3633 -0.8914 -0.5112 31 1 4.8181 3.8475 -0.0157 32 1 3.9647 -3.2907 0.8876 33 1 3.9566 -3.2922 -0.8924 34 1 5.1236 -5.5248 -0.9105 35 1 5.1559 -5.4693 0.8692 36 1 5.3609 -7.8022 0.0954 37 1 3.8547 -7.6412 -0.8410 38 1 4.1400 -7.3970 2.1906 39 1 3.3689 -8.7367 1.3061 40 1 1.7669 -8.1442 2.9988 41 1 1.5142 -6.3874 3.2656 42 1 -0.4454 -6.3415 1.8652 43 1 -0.6121 -7.9511 2.6340 44 1 1.0988 -6.5381 -0.5165 45 1 1.9077 -8.1282 -0.4682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412933448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -28.426686 kcal Electronic energy + Delta-G solvation = -27413.965437 eV Core-core repulsion = 23558.575848 eV Total energy + Delta-G solvation = -3855.389588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88708 -40.47476 -38.01247 -33.96496 -33.69545 -33.49214 -33.21530 -30.53448 -29.32049 -28.64819 -26.58646 -26.30180 -25.46944 -23.54669 -22.75340 -21.62273 -20.78668 -20.35549 -19.50433 -17.36527 -17.33432 -16.69844 -16.22633 -15.92895 -15.48439 -15.31770 -14.88894 -14.72537 -14.68660 -14.23719 -13.95277 -13.83083 -13.44939 -13.27801 -12.95001 -12.88245 -12.59169 -12.26912 -12.22454 -12.02915 -11.82234 -11.61214 -11.41941 -11.30358 -11.28720 -11.26844 -10.91736 -10.88558 -10.43362 -10.34052 -10.21629 -9.91786 -9.70083 -9.59216 -9.44542 -8.67209 -8.38880 -8.35675 -6.77150 -6.63595 -4.55642 2.07245 2.87815 2.93890 3.06574 3.08784 3.33148 3.38721 3.77190 3.88116 4.16849 4.25903 4.39496 4.44058 4.50530 4.59777 4.72182 4.78616 4.93082 5.01422 5.04049 5.12567 5.20772 5.34046 5.43877 5.48688 5.51365 5.53854 5.57351 5.61183 5.67725 5.69457 5.72875 5.81623 5.86408 5.90875 6.02913 6.06207 6.15882 6.57672 6.79297 6.90218 7.13777 7.25851 7.51029 7.91466 8.18726 8.71531 8.87856 10.29029 10.66000 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023865 B = 0.002536 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.978371 B =11038.015642 C =11813.966895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.516 5.516 3 C 0.346 3.654 4 C -0.448 4.448 5 H 0.083 0.917 6 C 0.078 3.922 7 N -0.738 5.738 8 Si 0.921 3.079 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.334 5.334 13 N -0.288 5.288 14 C 0.045 3.955 15 S -0.039 6.039 16 C -0.085 4.085 17 C 0.104 3.896 18 H 0.068 0.932 19 C -0.146 4.146 20 C -0.124 4.124 21 C -0.138 4.138 22 C 0.087 3.913 23 C -0.142 4.142 24 C 0.046 3.954 25 O -0.376 6.376 26 C 0.024 3.976 27 O -0.349 6.349 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.279 0.721 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -19.423 1.782 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.102 3.898 4 C -0.488 4.488 5 H 0.101 0.899 6 C -0.147 4.147 7 N -0.362 5.362 8 Si 0.744 3.256 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.190 1.190 12 N -0.182 5.182 13 N -0.134 5.134 14 C -0.327 4.327 15 S 0.188 5.812 16 C -0.234 4.234 17 C 0.045 3.955 18 H 0.085 0.915 19 C -0.185 4.185 20 C -0.161 4.161 21 C -0.175 4.175 22 C 0.046 3.954 23 C -0.179 4.179 24 C -0.030 4.030 25 O -0.295 6.295 26 C -0.054 4.054 27 O -0.269 6.269 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.739 -19.879 1.816 20.309 hybrid contribution -0.205 1.618 -0.095 1.634 sum -3.944 -18.260 1.721 18.761 Atomic orbital electron populations 1.21485 0.78559 1.02631 1.01625 1.46043 1.06081 1.05362 1.64291 1.21608 0.84771 0.88407 0.95053 1.18063 0.94651 0.86486 1.49639 0.89866 1.25789 0.94341 1.01253 0.93312 1.70001 1.00697 1.35059 1.30410 0.86183 0.78955 0.80691 0.79735 1.18969 1.20083 1.18977 1.75444 1.15306 0.97891 1.29525 1.74521 1.15218 1.07604 1.16099 1.25458 0.91528 0.92928 1.22754 1.84535 1.10043 0.91088 1.95529 1.23324 0.98791 0.93798 1.07525 1.21897 0.92255 0.92621 0.88743 0.91465 1.22187 0.97268 0.95106 1.03956 1.21664 1.00661 0.95935 0.97855 1.22083 0.95809 1.00135 0.99518 1.22342 0.94787 0.82921 0.95314 1.23091 0.94826 1.03199 0.96833 1.23618 0.96365 0.98571 0.84483 1.88884 1.44922 1.62691 1.33037 1.23853 0.86529 0.98892 0.96082 1.88033 1.75068 1.20662 1.43097 0.92572 0.90399 0.91555 0.90956 0.88419 0.87796 0.90183 0.90358 0.90959 0.91615 0.90510 0.90572 0.89341 0.88603 0.91404 0.88854 0.91328 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.91 10.87 59.85 0.65 2.56 16 2 N -0.52 -12.73 3.26 -123.18 -0.40 -13.13 16 3 C 0.35 9.82 7.53 -154.82 -1.17 8.66 16 4 C -0.45 -12.02 9.04 -38.32 -0.35 -12.36 16 5 H 0.08 2.02 7.31 -52.49 -0.38 1.63 16 6 C 0.08 2.02 5.50 -17.30 -0.10 1.93 16 7 N -0.74 -20.45 11.94 55.56 0.66 -19.78 16 8 Si 0.92 18.66 29.56 -169.99 -5.03 13.63 16 9 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 10 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 12 N -0.33 -10.19 10.48 31.26 0.33 -9.86 16 13 N -0.29 -8.01 11.62 30.89 0.36 -7.65 16 14 C 0.05 1.11 8.09 -87.28 -0.71 0.40 16 15 S -0.04 -0.73 21.42 -107.50 -2.30 -3.03 16 16 C -0.09 -1.36 4.95 37.16 0.18 -1.17 16 17 C 0.10 1.27 2.40 -26.68 -0.06 1.21 16 18 H 0.07 0.79 6.65 -51.93 -0.35 0.44 16 19 C -0.15 -1.45 5.40 -26.59 -0.14 -1.59 16 20 C -0.12 -0.98 5.81 -26.49 -0.15 -1.14 16 21 C -0.14 -1.14 4.59 -26.85 -0.12 -1.26 16 22 C 0.09 0.88 0.96 -89.87 -0.09 0.79 16 23 C -0.14 -1.28 6.43 -24.93 -0.16 -1.45 16 24 C 0.05 0.44 7.73 38.27 0.30 0.74 16 25 O -0.38 -4.38 11.53 -35.23 -0.41 -4.79 16 26 C 0.02 0.25 6.18 37.47 0.23 0.48 16 27 O -0.35 -4.52 9.41 -35.23 -0.33 -4.85 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 30 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 31 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 32 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 33 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.48 6.95 -51.93 -0.36 0.12 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.65 7.84 -51.93 -0.41 0.24 16 41 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.78 6.74 -51.93 -0.35 0.43 16 45 H 0.09 0.78 6.67 -51.93 -0.35 0.44 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -33.97 371.33 -9.98 -43.95 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.77 Total: 2.12 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -1.68 Total: -2.20 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.95 Total: -50.42 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: -0.74 Total: -9.64 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.30 Total: -3.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.97 -9.98 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412933448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.520 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds