Wall clock time and date at job start Sat Apr 11 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38348 * 127.15380 * 2 1 4 4 C 1.39776 * 126.56657 * 0.02562 * 3 2 1 5 5 H 1.08002 * 119.99962 * 0.26902 * 4 3 2 6 6 C 1.40078 * 119.99736 * 180.26442 * 4 3 2 7 7 N 1.30811 * 120.00351 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99707 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47084 * 59.99718 * 8 6 4 10 10 H 1.48493 * 109.47306 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47136 * 300.00216 * 8 6 4 12 12 N 1.33096 * 106.86947 * 180.22540 * 3 2 1 13 13 N 1.28520 * 109.74695 * 359.78117 * 12 3 2 14 14 C 1.32388 * 110.20170 * 359.97438 * 13 12 3 15 15 S 1.76198 * 126.25764 * 179.97438 * 14 13 12 16 16 C 1.81002 * 99.99878 * 0.02666 * 15 14 13 17 17 C 1.53006 * 109.47089 * 180.02562 * 16 15 14 18 18 H 1.08995 * 109.48645 * 60.03613 * 17 16 15 19 19 C 1.53093 * 109.48589 * 180.09161 * 17 16 15 20 20 C 1.53185 * 109.24918 * 178.04717 * 19 17 16 21 21 C 1.53274 * 108.96544 * 302.52620 * 20 19 17 22 22 C 1.52498 * 109.20795 * 56.04948 * 21 20 19 23 23 C 1.54320 * 109.99795 * 181.78619 * 22 21 20 24 24 C 1.55103 * 101.97169 * 220.83880 * 23 22 21 25 25 O 1.44422 * 103.55710 * 36.61274 * 24 23 22 26 26 C 1.43875 * 106.99444 * 320.23748 * 25 24 23 27 27 O 1.42229 * 110.92161 * 303.91298 * 22 21 20 28 28 H 1.08995 * 109.46769 * 270.17445 * 1 2 3 29 29 H 1.08999 * 109.46681 * 30.17217 * 1 2 3 30 30 H 1.08995 * 109.47055 * 150.16793 * 1 2 3 31 31 H 0.96999 * 119.99911 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47446 * 60.00463 * 16 15 14 33 33 H 1.09001 * 109.47383 * 300.00236 * 16 15 14 34 34 H 1.09007 * 109.50535 * 297.98067 * 19 17 16 35 35 H 1.09004 * 109.50828 * 58.11391 * 19 17 16 36 36 H 1.08998 * 109.55037 * 182.68115 * 20 19 17 37 37 H 1.08998 * 109.63963 * 62.42296 * 20 19 17 38 38 H 1.08997 * 109.51788 * 296.12398 * 21 20 19 39 39 H 1.09001 * 109.51416 * 175.96655 * 21 20 19 40 40 H 1.08997 * 110.92873 * 339.01099 * 23 22 21 41 41 H 1.08996 * 110.92711 * 102.66790 * 23 22 21 42 42 H 1.08997 * 110.60484 * 278.09084 * 24 23 22 43 43 H 1.09004 * 110.73109 * 155.19845 * 24 23 22 44 44 H 1.09002 * 109.90310 * 267.03806 * 26 25 24 45 45 H 1.08999 * 110.05894 * 145.86818 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9088 2.4444 0.0005 5 1 0.8596 2.7005 0.0053 6 6 2.8770 3.4567 -0.0052 7 7 4.1477 3.1465 -0.0114 8 14 2.3533 5.2498 -0.0038 9 1 1.5487 5.5296 1.2127 10 1 3.5584 6.1175 -0.0099 11 1 1.5363 5.5279 -1.2123 12 7 3.5490 0.6412 -0.0050 13 7 3.5370 -0.6439 -0.0034 14 6 2.2903 -1.0894 0.0032 15 16 1.7872 -2.7780 0.0071 16 6 3.4057 -3.5882 0.0004 17 6 3.2161 -5.1065 0.0020 18 1 2.6578 -5.4041 -0.8856 19 6 4.5849 -5.7921 -0.0014 20 6 4.3892 -7.3106 0.0495 21 6 3.5748 -7.6663 1.2983 22 6 2.2596 -6.8948 1.2762 23 6 1.4440 -7.2055 2.5489 24 6 0.0037 -7.3272 1.9862 25 8 0.1942 -7.9602 0.7022 26 6 1.3744 -7.3802 0.1184 27 8 2.4932 -5.4956 1.1731 28 1 -0.3633 0.0031 1.0276 29 1 -0.3633 0.8885 -0.5165 30 1 -0.3633 -0.8914 -0.5112 31 1 4.8181 3.8475 -0.0157 32 1 3.9647 -3.2907 0.8876 33 1 3.9566 -3.2922 -0.8924 34 1 5.1236 -5.5248 -0.9105 35 1 5.1559 -5.4693 0.8692 36 1 5.3609 -7.8022 0.0954 37 1 3.8547 -7.6412 -0.8410 38 1 4.1400 -7.3970 2.1906 39 1 3.3689 -8.7367 1.3061 40 1 1.7669 -8.1442 2.9988 41 1 1.5142 -6.3874 3.2656 42 1 -0.4454 -6.3415 1.8652 43 1 -0.6121 -7.9511 2.6340 44 1 1.0988 -6.5381 -0.5165 45 1 1.9077 -8.1282 -0.4682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412933448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:39 Heat of formation + Delta-G solvation = -49.760474 kcal Electronic energy + Delta-G solvation = -27414.890539 eV Core-core repulsion = 23558.575848 eV Total energy + Delta-G solvation = -3856.314691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.45734 -41.70483 -38.87327 -35.63451 -35.18287 -34.74738 -34.33521 -31.49484 -31.21852 -29.57129 -28.27469 -27.51685 -27.08171 -24.30208 -23.75234 -22.79571 -22.50692 -22.10478 -20.32448 -19.26709 -18.22319 -17.94708 -17.40009 -17.24680 -16.81577 -16.54564 -16.32389 -16.11506 -15.67945 -15.62746 -15.11656 -14.85136 -14.70246 -14.39287 -14.16677 -13.91761 -13.82852 -13.71854 -13.44475 -13.19512 -12.93345 -12.86617 -12.76372 -12.62469 -12.39984 -12.14491 -12.03590 -11.99886 -11.79991 -11.69595 -11.62557 -11.42808 -11.16352 -10.73343 -10.58500 -10.40696 -10.29750 -10.26401 -8.54872 -8.50623 -6.59174 0.46160 1.20033 1.28799 1.41000 1.56584 1.61874 2.18125 2.43346 2.44601 2.50579 3.00368 3.33186 3.38917 3.65396 3.71339 3.78512 3.90098 3.92150 4.06224 4.10772 4.20584 4.25527 4.33215 4.39832 4.42873 4.47007 4.59311 4.63440 4.72923 4.80881 4.86022 4.87743 4.90072 4.92135 4.94921 5.00933 5.05565 5.10840 5.17400 5.31283 5.36464 5.55953 5.79112 6.02576 6.20686 6.26176 6.74874 6.91502 8.40695 8.63437 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023865 B = 0.002536 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.978371 B =11038.015642 C =11813.966895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.523 5.523 3 C 0.317 3.683 4 C -0.473 4.473 5 H 0.103 0.897 6 C 0.028 3.972 7 N -0.789 5.789 8 Si 1.008 2.992 9 H -0.254 1.254 10 H -0.271 1.271 11 H -0.253 1.253 12 N -0.390 5.390 13 N -0.331 5.331 14 C 0.053 3.947 15 S 0.000 6.000 16 C -0.082 4.082 17 C 0.111 3.889 18 H 0.077 0.923 19 C -0.143 4.143 20 C -0.119 4.119 21 C -0.134 4.134 22 C 0.080 3.920 23 C -0.140 4.140 24 C 0.042 3.958 25 O -0.392 6.392 26 C 0.023 3.977 27 O -0.373 6.373 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.285 0.715 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.115 0.885 44 H 0.054 0.946 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 -20.857 1.805 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.225 5.225 3 C 0.070 3.930 4 C -0.513 4.513 5 H 0.121 0.879 6 C -0.192 4.192 7 N -0.414 5.414 8 Si 0.826 3.174 9 H -0.178 1.178 10 H -0.196 1.196 11 H -0.177 1.177 12 N -0.236 5.236 13 N -0.176 5.176 14 C -0.321 4.321 15 S 0.227 5.773 16 C -0.232 4.232 17 C 0.052 3.948 18 H 0.095 0.905 19 C -0.183 4.183 20 C -0.157 4.157 21 C -0.171 4.171 22 C 0.040 3.960 23 C -0.177 4.177 24 C -0.034 4.034 25 O -0.312 6.312 26 C -0.054 4.054 27 O -0.293 6.293 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.133 0.867 44 H 0.072 0.928 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.194 -21.335 1.841 22.035 hybrid contribution 0.168 1.848 -0.079 1.857 sum -5.027 -19.487 1.762 20.202 Atomic orbital electron populations 1.21836 0.75350 1.04423 1.03257 1.46390 1.08095 1.04496 1.63477 1.22043 0.85117 0.89911 0.95889 1.18604 0.96009 0.86485 1.50217 0.87897 1.27003 0.93893 1.06538 0.91801 1.70153 1.02395 1.37093 1.31718 0.84894 0.78699 0.73426 0.80376 1.17796 1.19579 1.17673 1.75299 1.17354 0.99195 1.31750 1.74393 1.17178 1.07090 1.18927 1.26542 0.91075 0.95758 1.18694 1.84387 1.11543 0.86614 1.94771 1.23456 0.97016 0.96345 1.06352 1.21832 0.94021 0.89836 0.89109 0.90521 1.22182 0.95471 0.96624 1.03998 1.21676 1.01781 0.94039 0.98184 1.22079 0.94562 1.00903 0.99603 1.22576 0.96022 0.81610 0.95762 1.23140 0.94295 1.03981 0.96275 1.23736 0.97080 0.98350 0.84234 1.88867 1.45475 1.62948 1.33890 1.23901 0.86430 0.98952 0.96104 1.87988 1.75312 1.22808 1.43180 0.90925 0.89178 0.89233 0.90513 0.90372 0.88265 0.89385 0.91265 0.89183 0.90553 0.90700 0.88588 0.87131 0.89358 0.92773 0.86688 0.92811 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.42 10.87 127.77 1.39 4.81 16 2 N -0.52 -26.12 3.26 -543.63 -1.77 -27.89 16 3 C 0.32 18.56 7.53 133.23 1.00 19.56 16 4 C -0.47 -25.77 9.04 23.09 0.21 -25.56 16 5 H 0.10 4.95 7.31 -2.91 -0.02 4.93 16 6 C 0.03 1.48 5.50 85.29 0.47 1.95 16 7 N -0.79 -45.35 11.94 21.85 0.26 -45.09 16 8 Si 1.01 38.16 29.56 68.60 2.03 40.18 16 9 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 10 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 11 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 12 N -0.39 -24.90 10.48 -55.02 -0.58 -25.48 16 13 N -0.33 -19.23 11.62 -56.18 -0.65 -19.88 16 14 C 0.05 2.65 8.09 179.18 1.45 4.10 16 15 S 0.00 -0.01 21.42 -56.49 -1.21 -1.22 16 16 C -0.08 -2.66 4.95 71.98 0.36 -2.30 16 17 C 0.11 2.63 2.40 30.63 0.07 2.71 16 18 H 0.08 1.68 6.65 -2.39 -0.02 1.67 16 19 C -0.14 -2.64 5.40 30.69 0.17 -2.47 16 20 C -0.12 -1.56 5.81 30.75 0.18 -1.38 16 21 C -0.13 -1.84 4.59 30.52 0.14 -1.70 16 22 C 0.08 1.47 0.96 -10.31 -0.01 1.46 16 23 C -0.14 -2.26 6.43 31.76 0.20 -2.06 16 24 C 0.04 0.74 7.73 72.70 0.56 1.30 16 25 O -0.39 -8.42 11.53 -148.98 -1.72 -10.14 16 26 C 0.02 0.44 6.18 72.19 0.45 0.88 16 27 O -0.37 -9.30 9.41 -148.98 -1.40 -10.70 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.09 3.04 7.54 -2.39 -0.02 3.02 16 30 H 0.09 2.80 7.85 -2.39 -0.02 2.79 16 31 H 0.28 14.78 8.30 -92.71 -0.77 14.01 16 32 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 34 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.86 6.95 -2.39 -0.02 0.85 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.11 1.29 7.84 -2.39 -0.02 1.28 16 41 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.16 6.74 -2.39 -0.02 1.14 16 45 H 0.11 1.58 6.67 -2.39 -0.02 1.57 16 Total: -1.00 -77.87 371.33 2.59 -75.28 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 1.00 Total: 23.65 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: 6.64 Total: 1.29 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -2.74 Total: -118.34 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -3.12 Total: -20.85 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.21 Total: -1.22 kcal Total: -77.87 2.59 -75.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412933448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.520 kcal (2) G-P(sol) polarization free energy of solvation -77.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds