Wall clock time and date at job start Sat Apr 11 2020 05:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40036 * 125.93806 * 2 1 4 4 C 1.30894 * 108.21136 * 178.84420 * 3 2 1 5 5 C 1.39495 * 108.04646 * 0.06220 * 4 3 2 6 6 C 1.35245 * 125.94374 * 180.02562 * 2 1 3 7 7 C 1.50981 * 124.92161 * 3.64798 * 6 2 1 8 8 C 1.52914 * 110.54964 * 206.84924 * 7 6 2 9 9 C 1.53511 * 109.79489 * 275.45896 * 8 7 6 10 10 N 1.45443 * 109.48780 * 61.38753 * 9 8 7 11 11 S 1.65592 * 120.43606 * 212.69049 * 10 9 8 12 12 O 1.42102 * 104.28125 * 26.04583 * 11 10 9 13 13 O 1.42104 * 104.27901 * 153.90369 * 11 10 9 14 14 C 1.81403 * 104.44911 * 269.97339 * 11 10 9 15 15 C 1.53004 * 109.47335 * 174.01395 * 14 11 10 16 16 C 1.50703 * 115.54747 * 65.27775 * 15 14 11 17 17 H 1.07996 * 119.99747 * 268.54383 * 16 15 14 18 18 C 1.37879 * 120.00001 * 88.54976 * 16 15 14 19 19 N 1.31513 * 119.99973 * 174.69710 * 18 16 15 20 20 Si 1.86800 * 119.99731 * 354.69254 * 18 16 15 21 21 H 1.48499 * 109.46896 * 92.55857 * 20 18 16 22 22 H 1.48505 * 109.47028 * 212.55093 * 20 18 16 23 23 H 1.48498 * 109.47440 * 332.55673 * 20 18 16 24 24 C 1.53002 * 117.49653 * 279.60776 * 15 14 11 25 25 C 1.52995 * 117.49661 * 210.94902 * 15 14 11 26 26 C 1.46771 * 119.12825 * 32.66303 * 10 9 8 27 27 H 1.09001 * 109.47474 * 269.95449 * 1 2 3 28 28 H 1.08999 * 109.47473 * 29.95768 * 1 2 3 29 29 H 1.09000 * 109.47047 * 149.96257 * 1 2 3 30 30 H 1.07998 * 125.97132 * 180.08386 * 4 3 2 31 31 H 1.09003 * 109.25437 * 327.12250 * 7 6 2 32 32 H 1.08994 * 109.26094 * 86.56566 * 7 6 2 33 33 H 1.09008 * 109.41518 * 155.36271 * 8 7 6 34 34 H 1.09001 * 109.42082 * 35.56209 * 8 7 6 35 35 H 1.09002 * 109.47029 * 301.38224 * 9 8 7 36 36 H 1.08998 * 109.46737 * 181.38733 * 9 8 7 37 37 H 1.09000 * 109.47049 * 294.01749 * 14 11 10 38 38 H 1.09003 * 109.46710 * 54.01203 * 14 11 10 39 39 H 0.97000 * 119.99742 * 179.97438 * 19 18 16 40 40 H 1.08999 * 117.49889 * 359.97438 * 24 15 14 41 41 H 1.09004 * 117.49638 * 145.02330 * 24 15 14 42 42 H 1.09009 * 117.49660 * 214.97907 * 25 15 14 43 43 H 1.09005 * 117.50314 * 359.97407 * 25 15 14 44 44 H 1.09000 * 109.67869 * 153.17771 * 26 10 9 45 45 H 1.09004 * 109.70203 * 32.66113 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2868 1.1338 0.0000 4 6 3.5334 0.7354 0.0251 5 6 3.5411 -0.6594 0.0403 6 6 2.2588 -1.0949 -0.0005 7 6 1.7659 -2.5198 -0.0799 8 6 2.7631 -3.4705 0.5836 9 6 3.8626 -3.8520 -0.4175 10 7 4.5809 -2.6560 -0.8285 11 16 5.2020 -2.5348 -2.3587 12 8 4.3790 -3.3903 -3.1398 13 8 5.2499 -1.1366 -2.6078 14 6 6.8782 -3.2148 -2.2220 15 6 7.5107 -3.2960 -3.6129 16 6 7.7567 -1.9740 -4.2932 17 1 7.0027 -1.5512 -4.9405 18 6 8.9445 -1.3043 -4.0892 19 7 9.2032 -0.2043 -4.7621 20 14 10.1863 -1.9592 -2.8569 21 1 11.1548 -2.8441 -3.5529 22 1 10.9126 -0.8232 -2.2346 23 1 9.4789 -2.7310 -1.8038 24 6 7.1244 -4.4841 -4.4962 25 6 8.5180 -4.4193 -3.8663 26 6 4.7475 -1.5576 0.1307 27 1 -0.3634 -0.0008 1.0276 28 1 -0.3634 0.8903 -0.5132 29 1 -0.3633 -0.8896 -0.5144 30 1 4.4037 1.3749 0.0330 31 1 0.8041 -2.5963 0.4273 32 1 1.6433 -2.8001 -1.1260 33 1 2.2428 -4.3707 0.9109 34 1 3.2131 -2.9793 1.4464 35 1 3.4113 -4.3229 -1.2908 36 1 4.5564 -4.5487 0.0531 37 1 7.4819 -2.5679 -1.5855 38 1 6.8310 -4.2125 -1.7855 39 1 10.0387 0.2670 -4.6183 40 1 6.4201 -5.2080 -4.0864 41 1 7.0488 -4.3096 -5.5695 42 1 9.3587 -4.2022 -4.5254 43 1 8.7306 -5.1002 -3.0420 44 1 5.6461 -0.9908 -0.1128 45 1 4.8302 -1.9606 1.1401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413373135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:45 Heat of formation + Delta-G solvation = 43.466176 kcal Electronic energy + Delta-G solvation = -29046.859336 eV Core-core repulsion = 25194.587256 eV Total energy + Delta-G solvation = -3852.272080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35818 -37.55146 -37.11168 -36.35018 -35.07341 -33.99980 -32.28668 -32.14497 -30.77745 -28.48276 -27.44080 -25.83819 -25.48717 -25.00287 -21.72184 -21.23547 -20.82656 -19.64520 -19.31172 -18.13268 -17.25424 -16.77374 -16.41561 -16.22445 -15.36659 -15.28663 -14.94819 -14.74571 -14.42595 -14.15039 -13.90218 -13.67189 -13.33353 -13.01968 -12.89855 -12.78495 -12.61442 -12.51982 -12.37121 -12.30334 -11.88560 -11.49377 -11.37671 -11.16629 -11.15141 -11.10962 -10.92629 -10.84966 -10.63983 -10.52346 -10.36035 -10.06877 -9.71615 -9.15077 -9.14088 -8.92180 -8.64678 -8.43089 -8.16766 -6.15142 -4.22573 0.93436 1.90830 2.55258 2.87245 3.23269 3.32949 3.33625 3.37712 4.36290 4.43883 4.46390 4.53559 4.57971 4.74896 4.80326 4.84969 4.98626 5.05464 5.12881 5.16852 5.23586 5.25795 5.27411 5.36799 5.50364 5.57454 5.61886 5.70695 5.73415 5.77943 5.85096 5.95569 5.98067 6.04143 6.18423 6.20976 6.39107 6.42852 6.65469 6.75230 6.85664 6.91295 7.05569 7.06626 7.61080 7.80960 8.38612 8.90273 9.45921 10.96425 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.004257 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.900687 B = 6575.589085 C = 7295.488816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.381 5.381 3 N -0.302 5.302 4 C 0.073 3.927 5 C -0.244 4.244 6 C 0.096 3.904 7 C -0.056 4.056 8 C -0.119 4.119 9 C 0.111 3.889 10 N -1.007 6.007 11 S 2.612 3.388 12 O -0.969 6.969 13 O -0.928 6.928 14 C -0.578 4.578 15 C 0.002 3.998 16 C -0.509 4.509 17 H 0.086 0.914 18 C 0.089 3.911 19 N -0.882 5.882 20 Si 0.873 3.127 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.256 1.256 24 C -0.177 4.177 25 C -0.186 4.186 26 C 0.204 3.796 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.186 0.814 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.267 0.733 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.594 -7.439 15.022 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.164 5.164 3 N -0.123 5.123 4 C -0.113 4.113 5 C -0.257 4.257 6 C -0.032 4.032 7 C -0.095 4.095 8 C -0.159 4.159 9 C -0.015 4.015 10 N -0.843 5.843 11 S 2.709 3.291 12 O -0.959 6.959 13 O -0.918 6.918 14 C -0.709 4.709 15 C -0.001 4.001 16 C -0.546 4.546 17 H 0.104 0.896 18 C -0.115 4.115 19 N -0.518 5.518 20 Si 0.700 3.300 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.181 1.181 24 C -0.215 4.215 25 C -0.224 4.224 26 C 0.077 3.923 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.203 0.797 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.893 -5.887 14.229 21.422 hybrid contribution 1.823 -1.126 0.998 2.363 sum -13.070 -7.013 15.227 21.257 Atomic orbital electron populations 1.21772 0.74985 1.04336 1.02887 1.48473 1.06234 1.03635 1.58077 1.77346 1.01809 1.07553 1.25588 1.23636 0.95213 0.94234 0.98226 1.20127 0.94342 0.94196 1.17042 1.21058 0.90799 0.89933 1.01381 1.20234 0.98670 0.87915 1.02708 1.21834 0.96248 0.99052 0.98724 1.21314 0.93952 0.86766 0.99428 1.57950 1.69585 1.23831 1.32912 1.05144 0.76779 0.75233 0.71990 1.93473 1.65605 1.69856 1.66981 1.93596 1.86808 1.29599 1.81801 1.30359 1.22761 1.10678 1.07096 1.18860 1.00123 0.92092 0.88994 1.20332 1.04025 1.00984 1.29235 0.89614 1.24940 0.97554 0.94216 0.94835 1.69898 1.24716 1.17283 1.39854 0.86937 0.81731 0.78538 0.82753 1.20158 1.21651 1.18056 1.23019 0.97157 1.01361 0.99937 1.22989 0.93742 1.02763 1.02931 1.19444 0.94720 0.85207 0.92899 0.91056 0.89399 0.89828 0.79677 0.90701 0.89395 0.89938 0.90500 0.89085 0.92028 0.85620 0.87752 0.92295 0.90062 0.88683 0.88936 0.90686 0.89146 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.07 59.84 0.66 1.54 16 2 N -0.38 -5.17 4.02 -63.68 -0.26 -5.43 16 3 N -0.30 -4.85 12.57 30.56 0.38 -4.46 16 4 C 0.07 1.13 11.98 -17.48 -0.21 0.92 16 5 C -0.24 -3.61 5.63 -105.15 -0.59 -4.21 16 6 C 0.10 1.29 6.54 -81.93 -0.54 0.75 16 7 C -0.06 -0.56 5.26 -27.79 -0.15 -0.71 16 8 C -0.12 -1.01 5.57 -26.51 -0.15 -1.16 16 9 C 0.11 1.21 6.11 -4.35 -0.03 1.19 16 10 N -1.01 -14.54 2.80 -115.95 -0.32 -14.86 16 11 S 2.61 51.51 5.13 -107.50 -0.55 50.96 16 12 O -0.97 -20.45 16.58 -57.54 -0.95 -21.40 16 13 O -0.93 -22.24 16.68 -57.54 -0.96 -23.20 16 14 C -0.58 -11.22 5.65 37.16 0.21 -11.01 16 15 C 0.00 0.05 0.79 -155.66 -0.12 -0.08 16 16 C -0.51 -14.27 8.77 -34.44 -0.30 -14.57 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 19 N -0.88 -26.79 13.96 55.43 0.77 -26.01 16 20 Si 0.87 20.90 24.96 -169.99 -4.24 16.66 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.26 -5.60 5.68 56.52 0.32 -5.27 16 24 C -0.18 -3.66 9.96 -26.69 -0.27 -3.93 16 25 C -0.19 -3.84 7.67 -26.70 -0.20 -4.04 16 26 C 0.20 2.70 5.24 -5.06 -0.03 2.68 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.55 7.47 -51.93 -0.39 0.16 16 30 H 0.19 2.47 8.06 -52.49 -0.42 2.05 16 31 H 0.07 0.54 7.58 -51.93 -0.39 0.14 16 32 H 0.09 0.98 7.90 -51.93 -0.41 0.57 16 33 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.08 0.64 6.32 -51.93 -0.33 0.31 16 35 H 0.09 1.07 6.84 -51.93 -0.35 0.71 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.13 2.40 6.53 -51.92 -0.34 2.06 16 38 H 0.10 1.62 8.09 -51.92 -0.42 1.20 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 42 H 0.09 2.00 7.34 -51.92 -0.38 1.62 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.09 1.23 7.73 -51.93 -0.40 0.83 16 45 H 0.08 0.82 6.93 -51.93 -0.36 0.46 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -37.43 366.44 -9.21 -46.64 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.80 Total: 5.77 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -1.80 Total: -30.17 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.58 Total: -50.76 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.91 Total: -44.61 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.24 Total: 16.66 kcal Atomic # 16 Polarization: 51.51 SS G_CDS: -0.55 Total: 50.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.43 -9.21 -46.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413373135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.105 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds