Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40036 * 125.93806 * 2 1 4 4 C 1.30894 * 108.21136 * 178.84420 * 3 2 1 5 5 C 1.39495 * 108.04646 * 0.06220 * 4 3 2 6 6 C 1.35245 * 125.94374 * 180.02562 * 2 1 3 7 7 C 1.50981 * 124.92161 * 3.64798 * 6 2 1 8 8 C 1.52914 * 110.54964 * 206.84924 * 7 6 2 9 9 C 1.53511 * 109.79489 * 275.45896 * 8 7 6 10 10 N 1.45443 * 109.48780 * 61.38753 * 9 8 7 11 11 S 1.65592 * 120.43606 * 212.69049 * 10 9 8 12 12 O 1.42102 * 104.28125 * 26.04583 * 11 10 9 13 13 O 1.42104 * 104.27901 * 153.90369 * 11 10 9 14 14 C 1.81403 * 104.44911 * 269.97339 * 11 10 9 15 15 C 1.53004 * 109.47335 * 174.01395 * 14 11 10 16 16 C 1.50703 * 115.54747 * 65.27775 * 15 14 11 17 17 H 1.07996 * 119.99747 * 268.54383 * 16 15 14 18 18 C 1.37879 * 120.00001 * 88.54976 * 16 15 14 19 19 N 1.31513 * 119.99973 * 174.69710 * 18 16 15 20 20 Si 1.86800 * 119.99731 * 354.69254 * 18 16 15 21 21 H 1.48499 * 109.46896 * 92.55857 * 20 18 16 22 22 H 1.48505 * 109.47028 * 212.55093 * 20 18 16 23 23 H 1.48498 * 109.47440 * 332.55673 * 20 18 16 24 24 C 1.53002 * 117.49653 * 279.60776 * 15 14 11 25 25 C 1.52995 * 117.49661 * 210.94902 * 15 14 11 26 26 C 1.46771 * 119.12825 * 32.66303 * 10 9 8 27 27 H 1.09001 * 109.47474 * 269.95449 * 1 2 3 28 28 H 1.08999 * 109.47473 * 29.95768 * 1 2 3 29 29 H 1.09000 * 109.47047 * 149.96257 * 1 2 3 30 30 H 1.07998 * 125.97132 * 180.08386 * 4 3 2 31 31 H 1.09003 * 109.25437 * 327.12250 * 7 6 2 32 32 H 1.08994 * 109.26094 * 86.56566 * 7 6 2 33 33 H 1.09008 * 109.41518 * 155.36271 * 8 7 6 34 34 H 1.09001 * 109.42082 * 35.56209 * 8 7 6 35 35 H 1.09002 * 109.47029 * 301.38224 * 9 8 7 36 36 H 1.08998 * 109.46737 * 181.38733 * 9 8 7 37 37 H 1.09000 * 109.47049 * 294.01749 * 14 11 10 38 38 H 1.09003 * 109.46710 * 54.01203 * 14 11 10 39 39 H 0.97000 * 119.99742 * 179.97438 * 19 18 16 40 40 H 1.08999 * 117.49889 * 359.97438 * 24 15 14 41 41 H 1.09004 * 117.49638 * 145.02330 * 24 15 14 42 42 H 1.09009 * 117.49660 * 214.97907 * 25 15 14 43 43 H 1.09005 * 117.50314 * 359.97407 * 25 15 14 44 44 H 1.09000 * 109.67869 * 153.17771 * 26 10 9 45 45 H 1.09004 * 109.70203 * 32.66113 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2868 1.1338 0.0000 4 6 3.5334 0.7354 0.0251 5 6 3.5411 -0.6594 0.0403 6 6 2.2588 -1.0949 -0.0005 7 6 1.7659 -2.5198 -0.0799 8 6 2.7631 -3.4705 0.5836 9 6 3.8626 -3.8520 -0.4175 10 7 4.5809 -2.6560 -0.8285 11 16 5.2020 -2.5348 -2.3587 12 8 4.3790 -3.3903 -3.1398 13 8 5.2499 -1.1366 -2.6078 14 6 6.8782 -3.2148 -2.2220 15 6 7.5107 -3.2960 -3.6129 16 6 7.7567 -1.9740 -4.2932 17 1 7.0027 -1.5512 -4.9405 18 6 8.9445 -1.3043 -4.0892 19 7 9.2032 -0.2043 -4.7621 20 14 10.1863 -1.9592 -2.8569 21 1 11.1548 -2.8441 -3.5529 22 1 10.9126 -0.8232 -2.2346 23 1 9.4789 -2.7310 -1.8038 24 6 7.1244 -4.4841 -4.4962 25 6 8.5180 -4.4193 -3.8663 26 6 4.7475 -1.5576 0.1307 27 1 -0.3634 -0.0008 1.0276 28 1 -0.3634 0.8903 -0.5132 29 1 -0.3633 -0.8896 -0.5144 30 1 4.4037 1.3749 0.0330 31 1 0.8041 -2.5963 0.4273 32 1 1.6433 -2.8001 -1.1260 33 1 2.2428 -4.3707 0.9109 34 1 3.2131 -2.9793 1.4464 35 1 3.4113 -4.3229 -1.2908 36 1 4.5564 -4.5487 0.0531 37 1 7.4819 -2.5679 -1.5855 38 1 6.8310 -4.2125 -1.7855 39 1 10.0387 0.2670 -4.6183 40 1 6.4201 -5.2080 -4.0864 41 1 7.0488 -4.3096 -5.5695 42 1 9.3587 -4.2022 -4.5254 43 1 8.7306 -5.1002 -3.0420 44 1 5.6461 -0.9908 -0.1128 45 1 4.8302 -1.9606 1.1401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413373135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = 14.760776 kcal Electronic energy + Delta-G solvation = -29048.104096 eV Core-core repulsion = 25194.587256 eV Total energy + Delta-G solvation = -3853.516839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36485 -38.84257 -38.48425 -37.95642 -36.70040 -34.91720 -34.28753 -33.19185 -31.74355 -30.04808 -28.31814 -27.60339 -26.68933 -25.97373 -23.34506 -22.20845 -21.83722 -21.14917 -20.55562 -19.54045 -18.55364 -18.46034 -17.60055 -17.32520 -17.02612 -16.66824 -16.37604 -15.78707 -15.55284 -15.34540 -15.24875 -14.81555 -14.71704 -14.53032 -14.15216 -13.92482 -13.90115 -13.59140 -13.37892 -13.28421 -13.19918 -13.00549 -12.89251 -12.65687 -12.49103 -12.41241 -12.36146 -12.03657 -11.94993 -11.90150 -11.70555 -11.63877 -11.54203 -10.95912 -10.71729 -10.31684 -10.15694 -9.80355 -9.21237 -8.31326 -6.44775 -0.54263 0.88865 1.36504 1.38312 1.51951 1.68019 1.72913 2.10309 2.37018 2.96992 3.03519 3.20258 3.38198 3.64076 3.66494 3.70932 3.92568 4.01306 4.13497 4.24442 4.33255 4.34351 4.36454 4.38800 4.42081 4.48747 4.58751 4.63243 4.65152 4.73541 4.79239 4.85279 4.86133 5.02513 5.05073 5.08271 5.15980 5.23248 5.33044 5.43568 5.45708 5.62834 5.68397 5.86705 6.16061 6.19875 6.66362 6.73353 7.27938 8.85395 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.004257 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.900687 B = 6575.589085 C = 7295.488816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.384 5.384 3 N -0.339 5.339 4 C 0.048 3.952 5 C -0.271 4.271 6 C 0.095 3.905 7 C -0.060 4.060 8 C -0.112 4.112 9 C 0.096 3.904 10 N -0.995 5.995 11 S 2.612 3.388 12 O -0.993 6.993 13 O -0.990 6.990 14 C -0.572 4.572 15 C -0.033 4.033 16 C -0.513 4.513 17 H 0.022 0.978 18 C 0.025 3.975 19 N -0.944 5.944 20 Si 0.935 3.065 21 H -0.262 1.262 22 H -0.294 1.294 23 H -0.211 1.211 24 C -0.175 4.175 25 C -0.167 4.167 26 C 0.201 3.799 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.188 0.812 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.158 0.842 39 H 0.268 0.732 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.077 0.923 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.012 -11.821 18.909 26.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.167 5.167 3 N -0.160 5.160 4 C -0.137 4.137 5 C -0.284 4.284 6 C -0.034 4.034 7 C -0.099 4.099 8 C -0.151 4.151 9 C -0.028 4.028 10 N -0.833 5.833 11 S 2.711 3.289 12 O -0.983 6.983 13 O -0.980 6.980 14 C -0.704 4.704 15 C -0.036 4.036 16 C -0.551 4.551 17 H 0.041 0.959 18 C -0.174 4.174 19 N -0.582 5.582 20 Si 0.757 3.243 21 H -0.187 1.187 22 H -0.221 1.221 23 H -0.133 1.133 24 C -0.212 4.212 25 C -0.206 4.206 26 C 0.075 3.925 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.205 0.795 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.149 0.851 38 H 0.176 0.824 39 H 0.077 0.923 40 H 0.133 0.867 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.139 0.861 44 H 0.095 0.905 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.357 -10.292 18.104 25.875 hybrid contribution 1.759 0.265 -0.311 1.806 sum -13.598 -10.027 17.793 24.536 Atomic orbital electron populations 1.22169 0.72501 1.05477 1.04865 1.48885 1.07745 1.03102 1.57006 1.77242 1.02405 1.09432 1.26964 1.23889 0.95470 0.95402 0.98935 1.20439 0.95775 0.93993 1.18171 1.21695 0.90476 0.91472 0.99765 1.20457 1.00966 0.85829 1.02600 1.21886 0.95239 1.00186 0.97776 1.21769 0.95352 0.85691 0.99991 1.57489 1.69414 1.25438 1.31007 1.04712 0.77226 0.73746 0.73241 1.93426 1.66298 1.69765 1.68792 1.93527 1.87666 1.33158 1.83671 1.30203 1.21512 1.13847 1.04816 1.18779 1.03532 0.90158 0.91090 1.20440 1.02484 1.03566 1.28561 0.95942 1.25988 1.00095 0.94280 0.97052 1.70082 1.25803 1.19688 1.42636 0.85950 0.78936 0.78449 0.80970 1.18743 1.22136 1.13330 1.23097 0.98540 1.00584 0.98973 1.23100 0.92722 1.01191 1.03575 1.19670 0.93643 0.84822 0.94326 0.88587 0.89615 0.87423 0.79480 0.87254 0.90783 0.86033 0.89658 0.90172 0.88370 0.85123 0.82432 0.92298 0.86748 0.90539 0.90373 0.86101 0.90477 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 11.07 127.77 1.42 2.81 16 2 N -0.38 -10.19 4.02 -355.37 -1.43 -11.61 16 3 N -0.34 -11.23 12.57 -57.24 -0.72 -11.95 16 4 C 0.05 1.57 11.98 85.14 1.02 2.59 16 5 C -0.27 -7.93 5.63 -20.21 -0.11 -8.05 16 6 C 0.09 2.42 6.54 41.48 0.27 2.69 16 7 C -0.06 -0.99 5.26 29.91 0.16 -0.84 16 8 C -0.11 -1.33 5.57 30.74 0.17 -1.16 16 9 C 0.10 1.68 6.11 86.75 0.53 2.21 16 10 N -1.00 -26.33 2.80 -520.77 -1.46 -27.79 16 11 S 2.61 102.08 5.13 -56.49 -0.29 101.79 16 12 O -0.99 -41.61 16.58 -127.65 -2.12 -43.73 16 13 O -0.99 -50.18 16.68 -127.65 -2.13 -52.31 16 14 C -0.57 -20.42 5.65 71.98 0.41 -20.01 16 15 C -0.03 -1.48 0.79 -52.93 -0.04 -1.52 16 16 C -0.51 -30.05 8.77 25.60 0.22 -29.83 16 17 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 18 C 0.02 1.44 5.47 84.66 0.46 1.91 16 19 N -0.94 -60.77 13.96 21.45 0.30 -60.47 16 20 Si 0.93 42.26 24.96 68.60 1.71 43.98 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.21 -7.97 5.68 99.48 0.57 -7.40 16 24 C -0.17 -6.87 9.96 30.62 0.30 -6.56 16 25 C -0.17 -6.29 7.67 30.62 0.23 -6.05 16 26 C 0.20 5.00 5.24 85.57 0.45 5.44 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 1.13 7.47 -2.39 -0.02 1.11 16 30 H 0.19 5.53 8.06 -2.91 -0.02 5.51 16 31 H 0.11 1.05 7.58 -2.39 -0.02 1.03 16 32 H 0.07 1.49 7.90 -2.39 -0.02 1.47 16 33 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.08 0.94 6.32 -2.39 -0.02 0.92 16 35 H 0.08 1.61 6.84 -2.39 -0.02 1.59 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 37 H 0.13 4.55 6.53 -2.39 -0.02 4.53 16 38 H 0.16 3.88 8.09 -2.39 -0.02 3.87 16 39 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 40 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 41 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 42 H 0.08 3.16 7.34 -2.38 -0.02 3.15 16 43 H 0.12 3.48 8.14 -2.38 -0.02 3.46 16 44 H 0.08 2.10 7.73 -2.39 -0.02 2.08 16 45 H 0.13 2.01 6.93 -2.39 -0.02 1.99 16 Total: -1.00 -91.03 366.44 0.22 -90.81 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.85 Total: 27.65 kcal Atomic # 6 Polarization: -61.86 SS G_CDS: 5.49 Total: -56.37 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -3.30 Total: -111.82 kcal Atomic # 8 Polarization: -91.79 SS G_CDS: -4.25 Total: -96.04 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.71 Total: 43.98 kcal Atomic # 16 Polarization: 102.08 SS G_CDS: -0.29 Total: 101.79 kcal Total: -91.03 0.22 -90.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413373135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.575 kcal (2) G-P(sol) polarization free energy of solvation -91.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds