Wall clock time and date at job start Sat Apr 11 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36884 * 126.39710 * 2 1 4 4 C 1.34671 * 106.81524 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.02367 * 359.77675 * 4 3 2 6 6 C 1.30501 * 109.25177 * 0.36824 * 5 4 3 7 7 C 1.50703 * 125.64679 * 179.89233 * 6 5 4 8 8 H 1.09006 * 110.63834 * 176.55396 * 7 6 5 9 9 C 1.55155 * 110.87068 * 53.30482 * 7 6 5 10 10 C 1.55135 * 101.48472 * 205.89680 * 9 7 6 11 11 N 1.47426 * 104.72187 * 37.29574 * 10 9 7 12 12 S 1.65596 * 125.64663 * 155.82022 * 11 10 9 13 13 O 1.42094 * 104.27906 * 153.62102 * 12 11 10 14 14 O 1.42096 * 104.27884 * 25.75860 * 12 11 10 15 15 C 1.81402 * 104.44733 * 269.69039 * 12 11 10 16 16 C 1.53003 * 109.47042 * 188.59979 * 15 12 11 17 17 C 1.50702 * 115.56024 * 319.84796 * 16 15 12 18 18 H 1.07997 * 119.99692 * 99.67684 * 17 16 15 19 19 C 1.37873 * 120.00017 * 279.67495 * 17 16 15 20 20 N 1.31512 * 120.00255 * 190.42928 * 19 17 16 21 21 Si 1.86805 * 119.99925 * 10.42808 * 19 17 16 22 22 H 1.48500 * 109.47174 * 86.23456 * 21 19 17 23 23 H 1.48504 * 109.46909 * 206.23218 * 21 19 17 24 24 H 1.48503 * 109.47128 * 326.23415 * 21 19 17 25 25 C 1.52998 * 117.49683 * 105.53756 * 16 15 12 26 26 C 1.53000 * 117.49704 * 174.15996 * 16 15 12 27 27 C 1.47028 * 108.70110 * 335.55236 * 11 10 9 28 28 H 1.09004 * 109.47111 * 269.98381 * 1 2 3 29 29 H 1.09004 * 109.47090 * 29.97705 * 1 2 3 30 30 H 1.08994 * 109.47513 * 149.97691 * 1 2 3 31 31 H 1.08002 * 126.59284 * 0.04966 * 3 2 1 32 32 H 1.08002 * 125.98868 * 180.02562 * 4 3 2 33 33 H 1.08993 * 111.00678 * 324.13763 * 9 7 6 34 34 H 1.09006 * 111.00225 * 87.99114 * 9 7 6 35 35 H 1.09001 * 110.49627 * 278.45597 * 10 9 7 36 36 H 1.08994 * 110.34312 * 156.06011 * 10 9 7 37 37 H 1.08996 * 109.47196 * 68.59703 * 15 12 11 38 38 H 1.09001 * 109.47253 * 308.60057 * 15 12 11 39 39 H 0.96998 * 120.00217 * 180.02562 * 20 19 17 40 40 H 1.08998 * 117.49686 * 214.97941 * 25 16 15 41 41 H 1.08999 * 117.50314 * 0.02562 * 25 16 15 42 42 H 1.09004 * 117.49969 * 0.02562 * 26 16 15 43 43 H 1.09003 * 117.49993 * 144.99644 * 26 16 15 44 44 H 1.09001 * 109.87596 * 120.70779 * 27 11 10 45 45 H 1.09005 * 109.88158 * 241.71318 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 -0.0006 5 7 3.5096 -0.6903 0.0041 6 6 2.2663 -1.0870 -0.0004 7 6 1.8018 -2.5206 0.0002 8 1 0.7144 -2.5722 0.0570 9 6 2.4507 -3.3114 1.1668 10 6 2.4188 -4.7603 0.6132 11 7 2.7017 -4.6176 -0.8266 12 16 3.3384 -5.7913 -1.8060 13 8 2.8600 -5.4629 -3.1031 14 8 2.9703 -7.0108 -1.1764 15 6 5.1321 -5.5397 -1.7066 16 6 5.8298 -6.4289 -2.7379 17 6 5.2612 -7.8161 -2.8911 18 1 4.5916 -8.0380 -3.7088 19 6 5.5959 -8.8020 -1.9873 20 7 5.2716 -10.0534 -2.2290 21 14 6.5103 -8.3604 -0.4193 22 1 5.5345 -7.9660 0.6284 23 1 7.2894 -9.5355 0.0471 24 1 7.4337 -7.2286 -0.6869 25 6 6.3891 -5.7523 -3.9909 26 6 7.3412 -6.2622 -2.9072 27 6 2.3189 -3.2627 -1.2502 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 1.9613 2.1346 0.0008 32 1 4.4369 1.2611 -0.0003 33 1 3.4738 -2.9792 1.3425 34 1 1.8532 -3.2287 2.0747 35 1 1.4351 -5.2050 0.7642 36 1 3.1876 -5.3661 1.0926 37 1 5.4807 -5.8001 -0.7072 38 1 5.3644 -4.4946 -1.9115 39 1 5.5067 -10.7470 -1.5929 40 1 6.3458 -6.3105 -4.9261 41 1 6.2605 -4.6736 -4.0805 42 1 7.8386 -5.5193 -2.2836 43 1 7.9244 -7.1560 -3.1291 44 1 3.1861 -2.7429 -1.6577 45 1 1.5325 -3.3179 -2.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423896640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:50 Heat of formation + Delta-G solvation = 30.443225 kcal Electronic energy + Delta-G solvation = -28422.144151 eV Core-core repulsion = 24569.307353 eV Total energy + Delta-G solvation = -3852.836797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.35631 -38.36814 -36.99461 -36.17815 -34.96683 -34.29107 -32.17376 -32.01375 -29.59621 -28.47145 -28.14692 -27.20972 -25.47638 -22.94820 -22.15358 -21.58440 -21.40185 -19.51200 -19.31709 -18.38271 -17.56822 -17.12343 -16.51403 -16.07656 -15.83731 -15.17544 -15.15286 -14.63638 -14.30550 -14.14893 -13.80802 -13.56774 -13.46597 -13.31511 -13.16586 -13.06724 -12.95857 -12.61613 -12.47791 -12.41762 -11.67819 -11.56337 -11.26357 -11.07706 -11.03633 -10.98474 -10.93855 -10.80445 -10.56509 -10.35222 -10.11832 -10.07743 -9.84478 -9.62851 -9.04230 -8.79270 -8.58495 -8.55426 -8.36176 -6.16180 -4.26685 1.02116 1.77079 2.48067 2.93624 3.29726 3.37651 3.40057 3.43023 4.06901 4.31534 4.40498 4.42796 4.44389 4.61705 4.66995 4.69747 4.81941 4.85521 5.00029 5.04900 5.13194 5.23166 5.27023 5.32136 5.48133 5.50018 5.61531 5.72102 5.73270 5.82790 5.86516 6.00968 6.08564 6.14700 6.15378 6.29767 6.33231 6.53347 6.54263 6.63308 6.70889 6.89573 6.92005 7.16685 7.66021 7.91732 8.40201 8.89822 9.47770 10.95132 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.003586 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.988797 B = 7805.807438 C = 8121.147362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C -0.062 4.062 4 C -0.026 4.026 5 N -0.481 5.481 6 C 0.218 3.782 7 C -0.016 4.016 8 H 0.096 0.904 9 C -0.116 4.116 10 C 0.121 3.879 11 N -1.025 6.025 12 S 2.641 3.359 13 O -0.959 6.959 14 O -0.930 6.930 15 C -0.583 4.583 16 C 0.006 3.994 17 C -0.541 4.541 18 H 0.087 0.913 19 C 0.110 3.890 20 N -0.872 5.872 21 Si 0.849 3.151 22 H -0.267 1.267 23 H -0.285 1.285 24 H -0.245 1.245 25 C -0.175 4.175 26 C -0.174 4.174 27 C 0.135 3.865 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.269 0.731 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 22.333 8.544 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.143 5.143 3 C -0.195 4.195 4 C -0.174 4.174 5 N -0.199 5.199 6 C -0.044 4.044 7 C -0.037 4.037 8 H 0.114 0.886 9 C -0.156 4.156 10 C -0.005 4.005 11 N -0.861 5.861 12 S 2.738 3.262 13 O -0.950 6.950 14 O -0.920 6.920 15 C -0.714 4.714 16 C 0.003 3.997 17 C -0.578 4.578 18 H 0.105 0.895 19 C -0.098 4.098 20 N -0.506 5.506 21 Si 0.674 3.326 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.168 1.168 25 C -0.212 4.212 26 C -0.212 4.212 27 C 0.008 3.992 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.191 0.809 32 H 0.187 0.813 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.863 20.933 8.081 24.125 hybrid contribution 0.356 1.268 1.186 1.773 sum -8.507 22.201 9.267 25.517 Atomic orbital electron populations 1.22084 0.76725 1.04926 1.03690 1.45317 1.07576 1.06638 1.54721 1.22685 0.91422 0.92419 1.12942 1.22332 0.96438 0.91157 1.07474 1.70227 1.18290 1.11913 1.19470 1.22922 0.85862 0.90079 1.05576 1.20602 1.00159 0.85488 0.97499 0.88552 1.22909 1.02681 0.93819 0.96203 1.21982 1.01816 0.96503 0.80185 1.59317 1.79282 1.26908 1.20612 1.04319 0.76913 0.72084 0.72878 1.93478 1.78988 1.84035 1.38460 1.93566 1.81488 1.40799 1.76172 1.30325 1.25549 1.07290 1.08197 1.18734 0.93014 0.94925 0.93007 1.20436 1.31807 0.90358 1.15156 0.89528 1.24842 0.93444 0.94219 0.97297 1.69884 1.44822 1.00113 1.35747 0.87303 0.81082 0.79596 0.84608 1.19217 1.21117 1.16829 1.22939 1.05610 0.98218 0.94401 1.22961 0.93856 1.01947 1.02485 1.21561 1.00511 0.82081 0.95009 0.90412 0.89490 0.89189 0.80933 0.81300 0.89058 0.90029 0.91043 0.90272 0.86932 0.87157 0.92136 0.88953 0.90640 0.90967 0.89146 0.90800 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 10.83 59.85 0.65 0.96 16 2 N -0.46 -4.00 3.15 -121.28 -0.38 -4.38 16 3 C -0.06 -0.52 11.58 -16.56 -0.19 -0.72 16 4 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 5 N -0.48 -6.40 10.88 -10.81 -0.12 -6.51 16 6 C 0.22 2.47 6.46 -155.41 -1.00 1.46 16 7 C -0.02 -0.17 3.27 -89.94 -0.29 -0.46 16 8 H 0.10 0.76 6.87 -51.93 -0.36 0.40 16 9 C -0.12 -1.24 6.54 -24.46 -0.16 -1.40 16 10 C 0.12 1.62 6.90 -2.41 -0.02 1.60 16 11 N -1.02 -16.86 3.62 -111.28 -0.40 -17.26 16 12 S 2.64 57.87 4.77 -107.50 -0.51 57.36 16 13 O -0.96 -22.96 17.60 -57.54 -1.01 -23.97 16 14 O -0.93 -23.71 16.90 -57.54 -0.97 -24.68 16 15 C -0.58 -12.28 5.84 37.16 0.22 -12.06 16 16 C 0.01 0.14 1.11 -155.66 -0.17 -0.03 16 17 C -0.54 -15.55 7.54 -34.44 -0.26 -15.81 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.11 3.21 5.47 -17.82 -0.10 3.12 16 20 N -0.87 -27.02 13.96 55.43 0.77 -26.24 16 21 Si 0.85 21.30 25.37 -169.99 -4.31 16.98 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.24 -5.62 5.60 56.52 0.32 -5.31 16 25 C -0.17 -3.72 9.88 -26.73 -0.26 -3.99 16 26 C -0.17 -3.76 7.56 -26.73 -0.20 -3.97 16 27 C 0.14 1.87 6.48 -3.06 -0.02 1.85 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.35 7.13 -51.93 -0.37 -0.02 16 31 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.09 1.08 7.84 -51.93 -0.41 0.68 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.11 2.28 6.16 -51.93 -0.32 1.96 16 38 H 0.11 1.95 7.95 -51.92 -0.41 1.54 16 39 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 41 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 44 H 0.07 1.07 7.71 -51.93 -0.40 0.67 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -37.81 374.87 -10.30 -48.11 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.98 Total: 4.89 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -2.03 Total: -29.93 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.13 Total: -54.40 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.99 Total: -48.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.31 Total: 16.98 kcal Atomic # 16 Polarization: 57.87 SS G_CDS: -0.51 Total: 57.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.81 -10.30 -48.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423896640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.549 kcal (2) G-P(sol) polarization free energy of solvation -37.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds