Wall clock time and date at job start Sat Apr 11 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36884 * 126.39710 * 2 1 4 4 C 1.34671 * 106.81524 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.02367 * 359.77675 * 4 3 2 6 6 C 1.30501 * 109.25177 * 0.36824 * 5 4 3 7 7 C 1.50703 * 125.64679 * 179.89233 * 6 5 4 8 8 H 1.09006 * 110.63834 * 176.55396 * 7 6 5 9 9 C 1.55155 * 110.87068 * 53.30482 * 7 6 5 10 10 C 1.55135 * 101.48472 * 205.89680 * 9 7 6 11 11 N 1.47426 * 104.72187 * 37.29574 * 10 9 7 12 12 S 1.65596 * 125.64663 * 155.82022 * 11 10 9 13 13 O 1.42094 * 104.27906 * 153.62102 * 12 11 10 14 14 O 1.42096 * 104.27884 * 25.75860 * 12 11 10 15 15 C 1.81402 * 104.44733 * 269.69039 * 12 11 10 16 16 C 1.53003 * 109.47042 * 188.59979 * 15 12 11 17 17 C 1.50702 * 115.56024 * 319.84796 * 16 15 12 18 18 H 1.07997 * 119.99692 * 99.67684 * 17 16 15 19 19 C 1.37873 * 120.00017 * 279.67495 * 17 16 15 20 20 N 1.31512 * 120.00255 * 190.42928 * 19 17 16 21 21 Si 1.86805 * 119.99925 * 10.42808 * 19 17 16 22 22 H 1.48500 * 109.47174 * 86.23456 * 21 19 17 23 23 H 1.48504 * 109.46909 * 206.23218 * 21 19 17 24 24 H 1.48503 * 109.47128 * 326.23415 * 21 19 17 25 25 C 1.52998 * 117.49683 * 105.53756 * 16 15 12 26 26 C 1.53000 * 117.49704 * 174.15996 * 16 15 12 27 27 C 1.47028 * 108.70110 * 335.55236 * 11 10 9 28 28 H 1.09004 * 109.47111 * 269.98381 * 1 2 3 29 29 H 1.09004 * 109.47090 * 29.97705 * 1 2 3 30 30 H 1.08994 * 109.47513 * 149.97691 * 1 2 3 31 31 H 1.08002 * 126.59284 * 0.04966 * 3 2 1 32 32 H 1.08002 * 125.98868 * 180.02562 * 4 3 2 33 33 H 1.08993 * 111.00678 * 324.13763 * 9 7 6 34 34 H 1.09006 * 111.00225 * 87.99114 * 9 7 6 35 35 H 1.09001 * 110.49627 * 278.45597 * 10 9 7 36 36 H 1.08994 * 110.34312 * 156.06011 * 10 9 7 37 37 H 1.08996 * 109.47196 * 68.59703 * 15 12 11 38 38 H 1.09001 * 109.47253 * 308.60057 * 15 12 11 39 39 H 0.96998 * 120.00217 * 180.02562 * 20 19 17 40 40 H 1.08998 * 117.49686 * 214.97941 * 25 16 15 41 41 H 1.08999 * 117.50314 * 0.02562 * 25 16 15 42 42 H 1.09004 * 117.49969 * 0.02562 * 26 16 15 43 43 H 1.09003 * 117.49993 * 144.99644 * 26 16 15 44 44 H 1.09001 * 109.87596 * 120.70779 * 27 11 10 45 45 H 1.09005 * 109.88158 * 241.71318 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 -0.0006 5 7 3.5096 -0.6903 0.0041 6 6 2.2663 -1.0870 -0.0004 7 6 1.8018 -2.5206 0.0002 8 1 0.7144 -2.5722 0.0570 9 6 2.4507 -3.3114 1.1668 10 6 2.4188 -4.7603 0.6132 11 7 2.7017 -4.6176 -0.8266 12 16 3.3384 -5.7913 -1.8060 13 8 2.8600 -5.4629 -3.1031 14 8 2.9703 -7.0108 -1.1764 15 6 5.1321 -5.5397 -1.7066 16 6 5.8298 -6.4289 -2.7379 17 6 5.2612 -7.8161 -2.8911 18 1 4.5916 -8.0380 -3.7088 19 6 5.5959 -8.8020 -1.9873 20 7 5.2716 -10.0534 -2.2290 21 14 6.5103 -8.3604 -0.4193 22 1 5.5345 -7.9660 0.6284 23 1 7.2894 -9.5355 0.0471 24 1 7.4337 -7.2286 -0.6869 25 6 6.3891 -5.7523 -3.9909 26 6 7.3412 -6.2622 -2.9072 27 6 2.3189 -3.2627 -1.2502 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 1.9613 2.1346 0.0008 32 1 4.4369 1.2611 -0.0003 33 1 3.4738 -2.9792 1.3425 34 1 1.8532 -3.2287 2.0747 35 1 1.4351 -5.2050 0.7642 36 1 3.1876 -5.3661 1.0926 37 1 5.4807 -5.8001 -0.7072 38 1 5.3644 -4.4946 -1.9115 39 1 5.5067 -10.7470 -1.5929 40 1 6.3458 -6.3105 -4.9261 41 1 6.2605 -4.6736 -4.0805 42 1 7.8386 -5.5193 -2.2836 43 1 7.9244 -7.1560 -3.1291 44 1 3.1861 -2.7429 -1.6577 45 1 1.5325 -3.3179 -2.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423896640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:49 Heat of formation + Delta-G solvation = 2.468421 kcal Electronic energy + Delta-G solvation = -28423.357229 eV Core-core repulsion = 24569.307353 eV Total energy + Delta-G solvation = -3854.049876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.03010 -39.40051 -38.80882 -38.00003 -36.79250 -34.87403 -34.35542 -33.01212 -30.56483 -30.18077 -28.96040 -27.71695 -27.59982 -23.99413 -23.30436 -23.07252 -22.07863 -21.21400 -20.25907 -19.94767 -18.81247 -18.49578 -18.06308 -17.29872 -16.89004 -16.79855 -16.47969 -16.15539 -15.59271 -15.20451 -15.00079 -14.90210 -14.79535 -14.48703 -14.27237 -14.21305 -14.03309 -13.79973 -13.66951 -13.36484 -13.17739 -13.01474 -12.92803 -12.77186 -12.59432 -12.49242 -12.31294 -12.29086 -12.16216 -11.88284 -11.78439 -11.62952 -10.86042 -10.83440 -10.79523 -10.49541 -10.35652 -9.90124 -9.25944 -8.38995 -6.54049 -0.64027 1.11106 1.31828 1.33322 1.44774 1.87338 2.01585 2.18917 2.32892 2.94894 2.96123 3.09509 3.20018 3.35280 3.61003 3.70889 3.82334 3.90948 4.02145 4.10093 4.21391 4.30715 4.36732 4.40281 4.44043 4.47996 4.55873 4.57758 4.65348 4.72706 4.74766 4.82384 4.87042 4.88832 4.92331 4.94695 5.09127 5.16773 5.28219 5.38057 5.47074 5.47831 5.60583 5.90174 6.16246 6.28385 6.60408 7.21536 7.23674 8.77081 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018675 B = 0.003586 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.988797 B = 7805.807438 C = 8121.147362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.457 5.457 3 C -0.045 4.045 4 C -0.060 4.060 5 N -0.521 5.521 6 C 0.198 3.802 7 C -0.005 4.005 8 H 0.128 0.872 9 C -0.103 4.103 10 C 0.107 3.893 11 N -1.022 6.022 12 S 2.641 3.359 13 O -0.994 6.994 14 O -0.980 6.980 15 C -0.575 4.575 16 C -0.031 4.031 17 C -0.542 4.542 18 H 0.031 0.969 19 C 0.052 3.948 20 N -0.928 5.928 21 Si 0.897 3.103 22 H -0.260 1.260 23 H -0.282 1.282 24 H -0.204 1.204 25 C -0.168 4.168 26 C -0.158 4.158 27 C 0.128 3.872 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.209 0.791 32 H 0.179 0.821 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.149 0.851 39 H 0.271 0.729 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 26.387 10.773 29.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.139 5.139 3 C -0.179 4.179 4 C -0.208 4.208 5 N -0.241 5.241 6 C -0.064 4.064 7 C -0.026 4.026 8 H 0.146 0.854 9 C -0.143 4.143 10 C -0.017 4.017 11 N -0.861 5.861 12 S 2.741 3.259 13 O -0.984 6.984 14 O -0.970 6.970 15 C -0.708 4.708 16 C -0.034 4.034 17 C -0.580 4.580 18 H 0.049 0.951 19 C -0.150 4.150 20 N -0.564 5.564 21 Si 0.718 3.282 22 H -0.185 1.185 23 H -0.208 1.208 24 H -0.125 1.125 25 C -0.205 4.205 26 C -0.197 4.197 27 C 0.001 3.999 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.226 0.774 32 H 0.196 0.804 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.167 0.833 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.799 24.998 10.289 28.429 hybrid contribution 0.229 0.103 0.385 0.460 sum -8.570 25.101 10.675 28.592 Atomic orbital electron populations 1.22427 0.74220 1.06335 1.05247 1.45553 1.09096 1.05905 1.53320 1.23231 0.90685 0.93753 1.10201 1.22699 0.98134 0.90733 1.09222 1.70129 1.19913 1.13451 1.20581 1.22830 0.85978 0.90687 1.06929 1.20569 1.01778 0.84985 0.95315 0.85448 1.22848 1.02774 0.91338 0.97349 1.22331 1.02375 0.98727 0.78273 1.58790 1.78648 1.27009 1.21607 1.03823 0.77697 0.71981 0.72429 1.93421 1.79864 1.84515 1.40618 1.93501 1.82559 1.44061 1.76860 1.30176 1.23911 1.08878 1.07786 1.18686 0.95204 0.93368 0.96103 1.20502 1.30810 0.93349 1.13296 0.95101 1.25769 0.94580 0.93800 1.00859 1.70030 1.47442 1.01577 1.37400 0.86525 0.80720 0.80909 0.80033 1.18487 1.20776 1.12532 1.23052 1.04343 0.99869 0.93197 1.23037 0.91905 1.02393 1.02346 1.21770 1.00326 0.80776 0.96983 0.88726 0.87488 0.88554 0.77448 0.80357 0.90278 0.86719 0.89761 0.90745 0.85721 0.83298 0.92044 0.90193 0.87240 0.87312 0.90116 0.91741 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 10.83 127.77 1.38 1.67 16 2 N -0.46 -6.40 3.15 -537.61 -1.69 -8.10 16 3 C -0.05 -0.61 11.58 83.09 0.96 0.35 16 4 C -0.06 -1.17 11.87 83.52 0.99 -0.18 16 5 N -0.52 -12.98 10.88 -188.12 -2.05 -15.03 16 6 C 0.20 3.99 6.46 138.13 0.89 4.88 16 7 C -0.01 -0.09 3.27 -10.35 -0.03 -0.13 16 8 H 0.13 1.52 6.87 -2.38 -0.02 1.51 16 9 C -0.10 -1.92 6.54 32.06 0.21 -1.71 16 10 C 0.11 2.71 6.90 86.93 0.60 3.31 16 11 N -1.02 -32.76 3.62 -505.99 -1.83 -34.59 16 12 S 2.64 117.18 4.77 -56.49 -0.27 116.91 16 13 O -0.99 -49.05 17.60 -127.65 -2.25 -51.30 16 14 O -0.98 -51.77 16.90 -127.65 -2.16 -53.93 16 15 C -0.58 -23.21 5.84 71.98 0.42 -22.79 16 16 C -0.03 -1.47 1.11 -52.93 -0.06 -1.53 16 17 C -0.54 -32.40 7.54 25.60 0.19 -32.21 16 18 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 19 C 0.05 3.14 5.47 84.65 0.46 3.61 16 20 N -0.93 -60.38 13.96 21.45 0.30 -60.08 16 21 Si 0.90 43.32 25.37 68.60 1.74 45.06 16 22 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.20 -8.41 5.60 99.48 0.56 -7.85 16 25 C -0.17 -6.87 9.88 30.59 0.30 -6.57 16 26 C -0.16 -6.39 7.56 30.59 0.23 -6.15 16 27 C 0.13 3.37 6.48 86.73 0.56 3.93 16 28 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 30 H 0.10 0.37 7.13 -2.39 -0.02 0.35 16 31 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 32 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 33 H 0.08 1.70 7.84 -2.39 -0.02 1.68 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.12 4.71 6.16 -2.39 -0.01 4.69 16 38 H 0.15 4.78 7.95 -2.39 -0.02 4.76 16 39 H 0.27 16.36 8.31 -92.71 -0.77 15.59 16 40 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.11 3.73 8.09 -2.39 -0.02 3.71 16 42 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 43 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 44 H 0.06 1.81 7.71 -2.39 -0.02 1.79 16 45 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -88.58 374.87 -0.26 -88.83 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.83 Total: 25.74 kcal Atomic # 6 Polarization: -60.64 SS G_CDS: 7.12 Total: -53.52 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -5.27 Total: -117.80 kcal Atomic # 8 Polarization: -100.82 SS G_CDS: -4.40 Total: -105.23 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.74 Total: 45.06 kcal Atomic # 16 Polarization: 117.18 SS G_CDS: -0.27 Total: 116.91 kcal Total: -88.58 -0.26 -88.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423896640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.303 kcal (2) G-P(sol) polarization free energy of solvation -88.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds