Wall clock time and date at job start Sat Apr 11 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36882 * 126.39541 * 2 1 4 4 C 1.34665 * 106.82010 * 180.02562 * 3 2 1 5 5 N 1.34125 * 108.01869 * 359.78438 * 4 3 2 6 6 C 1.30500 * 109.25605 * 0.36729 * 5 4 3 7 7 C 1.50704 * 125.65065 * 179.90246 * 6 5 4 8 8 H 1.08998 * 110.91802 * 183.59262 * 7 6 5 9 9 C 1.55163 * 110.99885 * 307.49059 * 7 6 5 10 10 C 1.54338 * 103.01671 * 153.38548 * 9 7 6 11 11 N 1.47021 * 107.26699 * 338.13547 * 10 9 7 12 12 S 1.65597 * 125.64981 * 178.84772 * 11 10 9 13 13 O 1.42097 * 104.27953 * 153.62224 * 12 11 10 14 14 O 1.42105 * 104.27370 * 25.76787 * 12 11 10 15 15 C 1.81397 * 104.45100 * 269.69919 * 12 11 10 16 16 C 1.53007 * 109.46789 * 187.93858 * 15 12 11 17 17 C 1.50697 * 115.56280 * 320.20011 * 16 15 12 18 18 H 1.07996 * 119.99688 * 99.42412 * 17 16 15 19 19 C 1.37876 * 120.00316 * 279.41696 * 17 16 15 20 20 N 1.31519 * 119.99565 * 6.30147 * 19 17 16 21 21 Si 1.86798 * 120.00316 * 186.30450 * 19 17 16 22 22 H 1.48497 * 109.46899 * 60.00007 * 21 19 17 23 23 H 1.48492 * 109.47039 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46820 * 300.00173 * 21 19 17 25 25 C 1.53007 * 117.49616 * 174.50998 * 16 15 12 26 26 C 1.52998 * 59.99900 * 252.51294 * 25 16 15 27 27 C 1.47430 * 108.70197 * 358.59335 * 11 10 9 28 28 H 1.08995 * 109.46803 * 269.97438 * 1 2 3 29 29 H 1.09001 * 109.47359 * 29.97394 * 1 2 3 30 30 H 1.08999 * 109.46609 * 149.97445 * 1 2 3 31 31 H 1.08001 * 126.59272 * 359.97438 * 3 2 1 32 32 H 1.08002 * 125.99383 * 180.02562 * 4 3 2 33 33 H 1.09006 * 110.71790 * 271.93769 * 9 7 6 34 34 H 1.08999 * 110.72016 * 35.03960 * 9 7 6 35 35 H 1.09004 * 109.98879 * 218.66396 * 10 9 7 36 36 H 1.08995 * 109.77789 * 97.49941 * 10 9 7 37 37 H 1.08999 * 109.47258 * 67.94032 * 15 12 11 38 38 H 1.08999 * 109.47204 * 307.93420 * 15 12 11 39 39 H 0.96996 * 119.99467 * 174.95922 * 20 19 17 40 40 H 1.08993 * 117.49549 * 145.01932 * 25 16 15 41 41 H 1.09001 * 117.49844 * 0.02562 * 25 16 15 42 42 H 1.09002 * 117.49964 * 107.49334 * 26 25 16 43 43 H 1.08999 * 117.49856 * 252.50670 * 26 25 16 44 44 H 1.08999 * 110.36581 * 143.19662 * 27 11 10 45 45 H 1.08999 * 110.36131 * 265.40278 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6506 -0.0006 5 7 3.5096 -0.6901 0.0039 6 6 2.2664 -1.0869 -0.0007 7 6 1.8019 -2.5206 -0.0001 8 1 0.7156 -2.5777 -0.0684 9 6 2.4742 -3.3233 -1.1451 10 6 2.4642 -4.7701 -0.6077 11 7 2.3479 -4.6913 0.8557 12 16 2.2684 -5.9832 1.8886 13 8 2.7839 -5.4837 3.1150 14 8 2.9266 -7.0312 1.1901 15 6 0.4951 -6.3341 2.0391 16 6 0.2743 -7.3880 3.1262 17 6 1.2842 -8.5059 3.1628 18 1 2.0944 -8.4784 3.8764 19 6 1.1739 -9.5637 2.2855 20 7 0.2636 -9.5387 1.3366 21 14 2.3170 -11.0325 2.4447 22 1 2.1400 -11.6549 3.7813 23 1 1.9962 -12.0261 1.3889 24 1 3.7241 -10.5835 2.2902 25 6 -1.1706 -7.7288 3.4966 26 6 -0.3052 -6.9153 4.4610 27 6 2.3198 -3.2715 1.2519 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3632 -0.8898 -0.5142 31 1 1.9612 2.1346 -0.0004 32 1 4.4368 1.2613 -0.0003 33 1 1.8919 -3.2465 -2.0634 34 1 3.4960 -2.9806 -1.3081 35 1 3.3914 -5.2749 -0.8792 36 1 1.6115 -5.3104 -1.0189 37 1 0.1168 -6.7085 1.0880 38 1 -0.0348 -5.4199 2.3065 39 1 0.2332 -10.2474 0.6750 40 1 -1.3906 -8.7615 3.7667 41 1 -1.9638 -7.2025 2.9656 42 1 -0.5290 -5.8536 4.5648 43 1 0.0441 -7.4129 5.3657 44 1 1.6393 -3.1251 2.0907 45 1 3.3217 -2.9308 1.5133 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423897578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:52 Heat of formation + Delta-G solvation = -0.514597 kcal Electronic energy + Delta-G solvation = -28222.099219 eV Core-core repulsion = 24367.919989 eV Total energy + Delta-G solvation = -3854.179229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.02371 -39.37384 -38.52893 -37.88538 -36.68556 -34.87164 -34.11912 -32.97928 -30.56190 -29.84924 -28.95268 -27.69562 -27.50112 -24.03518 -22.96362 -22.95392 -22.08049 -21.34498 -20.30953 -19.81695 -18.64860 -18.28099 -18.09985 -17.07814 -16.91999 -16.54831 -16.44749 -16.17452 -15.54782 -15.29333 -15.02004 -14.74362 -14.55514 -14.33313 -14.22831 -13.93631 -13.78568 -13.72819 -13.67857 -13.31294 -13.05292 -12.96681 -12.87817 -12.83086 -12.56988 -12.42958 -12.40293 -12.28879 -12.08395 -11.90507 -11.74189 -11.57057 -10.87416 -10.85262 -10.53668 -10.48852 -10.12491 -9.76990 -9.25982 -8.24064 -6.41444 -0.51421 1.11112 1.35230 1.40046 1.45570 1.89503 2.09719 2.18862 2.39464 3.06593 3.12269 3.19895 3.34469 3.44199 3.71210 3.74896 3.92024 4.02174 4.05713 4.19459 4.28382 4.31688 4.40416 4.48950 4.50973 4.59036 4.60505 4.65476 4.76546 4.77457 4.85355 4.86471 4.93685 4.98498 4.99442 5.12671 5.18815 5.29106 5.38680 5.41863 5.50899 5.60947 5.68865 5.90228 6.21311 6.28681 6.67742 7.22118 7.36626 8.82847 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.003268 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.725084 B = 8566.772435 C = 9080.330215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.456 5.456 3 C -0.044 4.044 4 C -0.062 4.062 5 N -0.525 5.525 6 C 0.200 3.800 7 C -0.008 4.008 8 H 0.130 0.870 9 C -0.101 4.101 10 C 0.111 3.889 11 N -1.022 6.022 12 S 2.641 3.359 13 O -1.001 7.001 14 O -0.984 6.984 15 C -0.545 4.545 16 C 0.014 3.986 17 C -0.565 4.565 18 H 0.046 0.954 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.922 3.078 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.282 1.282 25 C -0.142 4.142 26 C -0.190 4.190 27 C 0.131 3.869 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.210 0.790 32 H 0.180 0.820 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.268 0.732 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 22.321 -7.565 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.138 5.138 3 C -0.177 4.177 4 C -0.209 4.209 5 N -0.244 5.244 6 C -0.063 4.063 7 C -0.029 4.029 8 H 0.148 0.852 9 C -0.141 4.141 10 C -0.014 4.014 11 N -0.861 5.861 12 S 2.742 3.258 13 O -0.992 6.992 14 O -0.974 6.974 15 C -0.679 4.679 16 C 0.012 3.988 17 C -0.602 4.602 18 H 0.064 0.936 19 C -0.143 4.143 20 N -0.514 5.514 21 Si 0.748 3.252 22 H -0.188 1.188 23 H -0.193 1.193 24 H -0.208 1.208 25 C -0.181 4.181 26 C -0.227 4.227 27 C 0.005 3.995 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.227 0.773 32 H 0.197 0.803 33 H 0.131 0.869 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.445 21.191 -7.251 22.834 hybrid contribution -0.246 -0.474 0.063 0.538 sum -4.691 20.717 -7.188 22.424 Atomic orbital electron populations 1.22447 0.74148 1.06617 1.05106 1.45557 1.09119 1.05861 1.53268 1.23237 0.90629 0.93774 1.10106 1.22705 0.98206 0.90673 1.09336 1.70133 1.20088 1.13579 1.20638 1.22774 0.85924 0.90684 1.06911 1.20716 1.01800 0.84845 0.95581 0.85209 1.22621 1.02429 0.91149 0.97889 1.21906 1.02303 0.98969 0.78205 1.58798 1.90121 1.18820 1.18319 1.03868 0.78818 0.71145 0.71993 1.93419 1.79156 1.80251 1.46383 1.93457 1.73733 1.56325 1.73926 1.29805 1.22606 1.06763 1.08678 1.18306 0.95231 0.94173 0.91102 1.20747 1.12172 1.06448 1.20841 0.93601 1.25384 0.95254 0.99379 0.94240 1.69940 1.33411 1.34201 1.13823 0.86155 0.80056 0.80265 0.78769 1.18809 1.19309 1.20752 1.22530 0.94004 0.98721 1.02818 1.23187 1.05719 0.99546 0.94228 1.21966 1.01420 0.78894 0.97226 0.89346 0.87144 0.88094 0.77307 0.80319 0.86904 0.90734 0.92353 0.89854 0.85475 0.84564 0.92297 0.91714 0.89124 0.87931 0.90329 0.89771 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.87 127.77 1.39 1.74 16 2 N -0.46 -6.95 3.15 -537.61 -1.69 -8.64 16 3 C -0.04 -0.64 11.58 83.09 0.96 0.32 16 4 C -0.06 -1.27 11.87 83.52 0.99 -0.28 16 5 N -0.53 -14.07 10.90 -188.13 -2.05 -16.12 16 6 C 0.20 4.34 6.59 138.13 0.91 5.25 16 7 C -0.01 -0.16 3.39 -10.15 -0.03 -0.19 16 8 H 0.13 1.74 6.82 -2.39 -0.02 1.72 16 9 C -0.10 -2.12 6.41 31.79 0.20 -1.91 16 10 C 0.11 3.08 6.90 86.73 0.60 3.68 16 11 N -1.02 -34.17 3.62 -506.41 -1.83 -36.00 16 12 S 2.64 117.66 4.77 -56.49 -0.27 117.39 16 13 O -1.00 -49.61 17.61 -127.65 -2.25 -51.86 16 14 O -0.98 -52.24 16.86 -127.65 -2.15 -54.39 16 15 C -0.54 -22.28 6.29 71.98 0.45 -21.82 16 16 C 0.01 0.67 1.57 -52.92 -0.08 0.59 16 17 C -0.56 -31.82 6.95 25.60 0.18 -31.64 16 18 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 19 C 0.06 3.54 5.42 84.65 0.46 4.00 16 20 N -0.88 -48.70 13.12 21.45 0.28 -48.42 16 21 Si 0.92 45.47 29.55 68.60 2.03 47.49 16 22 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -14.50 7.11 99.48 0.71 -13.79 16 25 C -0.14 -6.16 9.72 30.60 0.30 -5.86 16 26 C -0.19 -7.87 9.88 30.59 0.30 -7.57 16 27 C 0.13 3.70 6.34 86.85 0.55 4.26 16 28 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.10 0.40 7.04 -2.39 -0.02 0.38 16 31 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.18 2.95 8.06 -2.91 -0.02 2.92 16 33 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.07 1.80 7.80 -2.39 -0.02 1.79 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.13 5.25 8.14 -2.39 -0.02 5.23 16 38 H 0.14 4.26 7.95 -2.39 -0.02 4.24 16 39 H 0.27 14.16 8.32 -92.71 -0.77 13.39 16 40 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.09 3.43 8.14 -2.39 -0.02 3.42 16 42 H 0.10 3.53 8.08 -2.39 -0.02 3.51 16 43 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.06 1.84 7.96 -2.39 -0.02 1.82 16 Total: -1.00 -80.68 383.99 0.21 -80.47 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.98 Total: 19.52 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 7.18 Total: -49.45 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -5.30 Total: -109.18 kcal Atomic # 8 Polarization: -101.85 SS G_CDS: -4.40 Total: -106.25 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 117.66 SS G_CDS: -0.27 Total: 117.39 kcal Total: -80.68 0.21 -80.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423897578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.952 kcal (2) G-P(sol) polarization free energy of solvation -80.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds