Wall clock time and date at job start Sat Apr 11 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34945 * 126.03618 * 2 1 4 4 C 1.35316 * 107.74873 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.04332 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46808 * 324.92565 * 5 4 3 7 7 C 1.53239 * 109.46892 * 204.92509 * 5 4 3 8 8 S 1.81747 * 108.79449 * 182.33900 * 7 5 4 9 9 O 1.42101 * 109.46538 * 170.57779 * 8 7 5 10 10 C 1.81742 * 102.30509 * 54.54289 * 8 7 5 11 11 C 1.53238 * 108.79748 * 305.45744 * 10 8 7 12 12 N 1.46369 * 109.48810 * 57.65980 * 11 10 8 13 13 C 1.34777 * 119.64627 * 114.88574 * 12 11 10 14 14 O 1.21284 * 119.99693 * 185.66287 * 13 12 11 15 15 C 1.50693 * 120.00249 * 5.66379 * 13 12 11 16 16 C 1.53000 * 109.47348 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47106 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.46943 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99654 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99636 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00208 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99638 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46923 * 90.00005 * 22 20 18 24 24 H 1.48498 * 109.46870 * 209.99989 * 22 20 18 25 25 H 1.48502 * 109.46972 * 329.99847 * 22 20 18 26 26 C 1.39873 * 107.91860 * 0.26239 * 4 3 2 27 27 N 1.30838 * 108.20183 * 359.55691 * 26 4 3 28 28 H 1.08998 * 109.46803 * 90.00222 * 1 2 3 29 29 H 1.09002 * 109.46672 * 209.99796 * 1 2 3 30 30 H 1.08993 * 109.47162 * 329.99972 * 1 2 3 31 31 H 1.08007 * 126.12632 * 359.95708 * 3 2 1 32 32 H 1.08993 * 109.57962 * 62.55043 * 7 5 4 33 33 H 1.09000 * 109.58001 * 302.13384 * 7 5 4 34 34 H 1.08998 * 109.57751 * 185.66030 * 10 8 7 35 35 H 1.08995 * 109.58187 * 65.25716 * 10 8 7 36 36 H 1.09001 * 109.46482 * 177.66725 * 11 10 8 37 37 H 1.08996 * 109.46778 * 297.65293 * 11 10 8 38 38 H 1.09001 * 109.46906 * 300.00083 * 15 13 12 39 39 H 1.09002 * 109.47042 * 59.99789 * 15 13 12 40 40 H 1.09001 * 109.47382 * 300.00033 * 16 15 13 41 41 H 1.09002 * 109.47024 * 60.00019 * 16 15 13 42 42 H 1.09001 * 109.46924 * 300.00188 * 17 16 15 43 43 H 1.08992 * 109.47392 * 60.00080 * 17 16 15 44 44 H 0.97002 * 120.00353 * 180.02562 * 21 20 18 45 45 H 1.07995 * 125.90096 * 179.73501 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0013 6 1 4.5730 2.4406 -0.5892 7 6 5.9472 0.7789 -0.6071 8 16 7.4287 1.8291 -0.5337 9 8 8.5709 1.0623 -0.8895 10 6 7.5125 2.2578 1.2305 11 6 6.1748 2.8745 1.6529 12 7 5.0923 1.9291 1.3763 13 6 4.3867 1.4058 2.3985 14 8 3.5584 0.5458 2.1860 15 6 4.6271 1.8893 3.8054 16 6 3.7032 1.1395 4.7672 17 6 3.9468 1.6310 6.1956 18 6 3.0372 0.8919 7.1430 19 1 2.3535 0.1467 6.7642 20 6 3.0779 1.1673 8.4934 21 7 3.9109 2.0745 8.9546 22 14 1.9499 0.2518 9.6677 23 1 2.6300 -0.9768 10.1504 24 1 1.6256 1.1250 10.8242 25 1 0.6975 -0.1204 8.9619 26 6 3.5347 -0.7321 -0.0052 27 7 2.2892 -1.1328 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.9281 2.1194 -0.0007 32 1 5.7257 0.5318 -1.6453 33 1 6.1196 -0.1361 -0.0404 34 1 8.3145 2.9777 1.3937 35 1 7.7015 1.3584 1.8164 36 1 6.1985 3.0979 2.7195 37 1 6.0059 3.7942 1.0928 38 1 5.6655 1.7049 4.0805 39 1 4.4204 2.9581 3.8626 40 1 2.6648 1.3244 4.4919 41 1 3.9095 0.0708 4.7101 42 1 4.9851 1.4465 6.4711 43 1 3.7402 2.6996 6.2524 44 1 3.9398 2.2680 9.9047 45 1 4.4054 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466841603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:28 Heat of formation + Delta-G solvation = 23.605405 kcal Electronic energy + Delta-G solvation = -27935.234404 eV Core-core repulsion = 24082.101097 eV Total energy + Delta-G solvation = -3853.133307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35900 -39.67247 -36.60412 -35.83172 -34.46960 -33.65239 -32.31741 -31.78872 -30.23033 -29.46181 -27.80034 -26.43526 -24.45004 -23.85139 -22.91510 -20.99919 -20.81137 -19.88779 -18.96503 -17.58880 -17.12855 -16.56529 -16.15917 -16.02405 -15.63657 -15.38019 -15.15147 -14.87337 -14.73163 -14.42825 -14.22479 -14.13481 -13.65917 -13.26290 -12.99819 -12.94823 -12.62395 -12.46887 -12.41257 -12.17768 -12.11745 -11.95465 -11.79630 -11.65640 -11.34932 -10.82699 -10.61236 -10.56125 -10.49808 -10.14857 -9.92396 -9.70191 -9.33234 -9.17280 -9.07315 -8.76670 -8.56469 -8.34230 -7.57399 -5.99930 -4.01285 1.27217 2.09880 2.21547 2.68001 2.75807 2.89374 3.32736 3.35486 3.38641 3.43242 3.49118 4.37755 4.45953 4.50885 4.63808 4.77834 4.80809 4.89436 4.96188 5.05560 5.11515 5.20932 5.24240 5.36253 5.37747 5.40737 5.42699 5.60786 5.64936 5.67868 5.69219 5.98810 6.17056 6.22226 6.47052 6.69941 6.82993 6.90865 7.13530 7.21226 7.38809 7.68312 7.81140 7.92474 8.00651 8.44465 8.46208 9.05681 9.62814 11.11527 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.003390 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.457457 B = 8258.773743 C =10425.814002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.373 5.373 3 C 0.060 3.940 4 C -0.192 4.192 5 C 0.250 3.750 6 H 0.095 0.905 7 C -0.450 4.450 8 S 1.238 4.762 9 O -0.855 6.855 10 C -0.461 4.461 11 C 0.130 3.870 12 N -0.631 5.631 13 C 0.511 3.489 14 O -0.499 6.499 15 C -0.141 4.141 16 C -0.092 4.092 17 C 0.021 3.979 18 C -0.518 4.518 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.077 3.923 27 N -0.296 5.296 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.014 0.986 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.430 7.339 -24.639 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.155 5.155 3 C -0.086 4.086 4 C -0.205 4.205 5 C 0.145 3.855 6 H 0.113 0.887 7 C -0.589 4.589 8 S 1.437 4.563 9 O -0.850 6.850 10 C -0.599 4.599 11 C 0.006 3.994 12 N -0.368 5.368 13 C 0.300 3.700 14 O -0.371 6.371 15 C -0.181 4.181 16 C -0.130 4.130 17 C -0.016 4.016 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.537 5.537 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.110 4.110 27 N -0.117 5.117 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.180 0.820 32 H 0.142 0.858 33 H 0.112 0.888 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.032 0.968 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.706 6.195 -25.318 26.074 hybrid contribution 0.350 -1.617 2.335 2.862 sum 1.056 4.578 -22.983 23.458 Atomic orbital electron populations 1.21734 0.74853 1.04420 1.02468 1.48087 1.06060 1.03715 1.57678 1.21832 0.90538 0.92861 1.03362 1.19263 0.92753 0.93739 1.14724 1.18685 0.89464 0.95364 0.81993 0.88682 1.28065 1.12277 1.11272 1.07258 1.70308 0.85668 1.09240 0.91061 1.93131 1.43267 1.73348 1.75257 1.28012 1.03673 1.07998 1.20238 1.21224 0.82806 0.91332 1.04031 1.48385 1.35573 1.46842 1.06018 1.21242 0.80323 0.81393 0.87039 1.90838 1.33535 1.29442 1.83319 1.21927 1.02786 1.02165 0.91172 1.21408 0.97253 0.98741 0.95562 1.19118 0.96941 0.96371 0.89131 1.21258 1.20996 1.21402 0.91951 0.92726 1.25004 0.95730 0.95279 0.98398 1.69954 1.37165 1.32699 1.13882 0.86612 0.81233 0.79703 0.80596 1.20675 1.21204 1.19876 1.23282 0.94726 0.94049 0.98970 1.77232 1.01583 1.08379 1.24478 0.91395 0.89619 0.89822 0.82029 0.85764 0.88780 0.85703 0.88899 0.87952 0.89358 0.89781 0.89436 0.92942 0.93016 0.96758 0.96645 0.93059 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 11.47 59.85 0.69 1.67 16 2 N -0.37 -4.92 4.01 -68.16 -0.27 -5.19 16 3 C 0.06 0.71 10.30 -17.22 -0.18 0.53 16 4 C -0.19 -2.29 3.02 -105.05 -0.32 -2.61 16 5 C 0.25 2.11 3.17 -69.02 -0.22 1.89 16 6 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 7 C -0.45 -3.62 5.40 37.28 0.20 -3.42 16 8 S 1.24 8.53 13.71 -107.50 -1.47 7.05 16 9 O -0.85 -12.00 18.14 -35.23 -0.64 -12.64 16 10 C -0.46 -3.24 6.65 37.28 0.25 -2.99 16 11 C 0.13 0.86 6.14 -3.99 -0.02 0.83 16 12 N -0.63 -6.20 2.79 -167.33 -0.47 -6.67 16 13 C 0.51 7.39 7.54 -10.99 -0.08 7.30 16 14 O -0.50 -8.89 10.85 5.55 0.06 -8.83 16 15 C -0.14 -2.20 4.02 -27.89 -0.11 -2.31 16 16 C -0.09 -1.95 4.44 -26.73 -0.12 -2.07 16 17 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 18 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 19 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 22 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.08 1.10 9.66 -17.36 -0.17 0.94 16 27 N -0.30 -4.69 12.58 30.62 0.39 -4.31 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.16 1.40 8.06 -52.48 -0.42 0.97 16 32 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.01 7.17 -51.93 -0.37 0.64 16 34 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 0.74 5.73 -51.93 -0.30 0.45 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 1.24 7.63 -51.93 -0.40 0.85 16 39 H 0.09 1.21 7.91 -51.93 -0.41 0.80 16 40 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 41 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.17 2.19 7.23 -52.49 -0.38 1.81 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -41.75 374.95 -8.56 -50.32 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.89 Total: -2.60 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -0.63 Total: -13.59 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.38 Total: -42.41 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.58 Total: -21.47 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 8.53 SS G_CDS: -1.47 Total: 7.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -41.75 -8.56 -50.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466841603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.923 kcal (2) G-P(sol) polarization free energy of solvation -41.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds