Wall clock time and date at job start Sat Apr 11 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34945 * 126.03618 * 2 1 4 4 C 1.35316 * 107.74873 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.04332 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46808 * 324.92565 * 5 4 3 7 7 C 1.53239 * 109.46892 * 204.92509 * 5 4 3 8 8 S 1.81747 * 108.79449 * 182.33900 * 7 5 4 9 9 O 1.42101 * 109.46538 * 170.57779 * 8 7 5 10 10 C 1.81742 * 102.30509 * 54.54289 * 8 7 5 11 11 C 1.53238 * 108.79748 * 305.45744 * 10 8 7 12 12 N 1.46369 * 109.48810 * 57.65980 * 11 10 8 13 13 C 1.34777 * 119.64627 * 114.88574 * 12 11 10 14 14 O 1.21284 * 119.99693 * 185.66287 * 13 12 11 15 15 C 1.50693 * 120.00249 * 5.66379 * 13 12 11 16 16 C 1.53000 * 109.47348 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.47106 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.46943 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99654 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99636 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00208 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99638 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46923 * 90.00005 * 22 20 18 24 24 H 1.48498 * 109.46870 * 209.99989 * 22 20 18 25 25 H 1.48502 * 109.46972 * 329.99847 * 22 20 18 26 26 C 1.39873 * 107.91860 * 0.26239 * 4 3 2 27 27 N 1.30838 * 108.20183 * 359.55691 * 26 4 3 28 28 H 1.08998 * 109.46803 * 90.00222 * 1 2 3 29 29 H 1.09002 * 109.46672 * 209.99796 * 1 2 3 30 30 H 1.08993 * 109.47162 * 329.99972 * 1 2 3 31 31 H 1.08007 * 126.12632 * 359.95708 * 3 2 1 32 32 H 1.08993 * 109.57962 * 62.55043 * 7 5 4 33 33 H 1.09000 * 109.58001 * 302.13384 * 7 5 4 34 34 H 1.08998 * 109.57751 * 185.66030 * 10 8 7 35 35 H 1.08995 * 109.58187 * 65.25716 * 10 8 7 36 36 H 1.09001 * 109.46482 * 177.66725 * 11 10 8 37 37 H 1.08996 * 109.46778 * 297.65293 * 11 10 8 38 38 H 1.09001 * 109.46906 * 300.00083 * 15 13 12 39 39 H 1.09002 * 109.47042 * 59.99789 * 15 13 12 40 40 H 1.09001 * 109.47382 * 300.00033 * 16 15 13 41 41 H 1.09002 * 109.47024 * 60.00019 * 16 15 13 42 42 H 1.09001 * 109.46924 * 300.00188 * 17 16 15 43 43 H 1.08992 * 109.47392 * 60.00080 * 17 16 15 44 44 H 0.97002 * 120.00353 * 180.02562 * 21 20 18 45 45 H 1.07995 * 125.90096 * 179.73501 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5454 0.0013 6 1 4.5730 2.4406 -0.5892 7 6 5.9472 0.7789 -0.6071 8 16 7.4287 1.8291 -0.5337 9 8 8.5709 1.0623 -0.8895 10 6 7.5125 2.2578 1.2305 11 6 6.1748 2.8745 1.6529 12 7 5.0923 1.9291 1.3763 13 6 4.3867 1.4058 2.3985 14 8 3.5584 0.5458 2.1860 15 6 4.6271 1.8893 3.8054 16 6 3.7032 1.1395 4.7672 17 6 3.9468 1.6310 6.1956 18 6 3.0372 0.8919 7.1430 19 1 2.3535 0.1467 6.7642 20 6 3.0779 1.1673 8.4934 21 7 3.9109 2.0745 8.9546 22 14 1.9499 0.2518 9.6677 23 1 2.6300 -0.9768 10.1504 24 1 1.6256 1.1250 10.8242 25 1 0.6975 -0.1204 8.9619 26 6 3.5347 -0.7321 -0.0052 27 7 2.2892 -1.1328 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.9281 2.1194 -0.0007 32 1 5.7257 0.5318 -1.6453 33 1 6.1196 -0.1361 -0.0404 34 1 8.3145 2.9777 1.3937 35 1 7.7015 1.3584 1.8164 36 1 6.1985 3.0979 2.7195 37 1 6.0059 3.7942 1.0928 38 1 5.6655 1.7049 4.0805 39 1 4.4204 2.9581 3.8626 40 1 2.6648 1.3244 4.4919 41 1 3.9095 0.0708 4.7101 42 1 4.9851 1.4465 6.4711 43 1 3.7402 2.6996 6.2524 44 1 3.9398 2.2680 9.9047 45 1 4.4054 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466841603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:27 Heat of formation + Delta-G solvation = -7.947395 kcal Electronic energy + Delta-G solvation = -27936.602636 eV Core-core repulsion = 24082.101097 eV Total energy + Delta-G solvation = -3854.501540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.27611 -40.66446 -37.56866 -36.75842 -36.14755 -34.76230 -33.84757 -32.92414 -31.09654 -30.30503 -29.49127 -27.23687 -26.06890 -24.62634 -24.00258 -22.32515 -21.84579 -21.15072 -19.94493 -18.59656 -18.23480 -17.96943 -17.30837 -16.90096 -16.72806 -16.51514 -16.08329 -16.00749 -15.63719 -15.56934 -15.32240 -15.04414 -14.85279 -14.25590 -14.19802 -14.02362 -13.78381 -13.71124 -13.44210 -13.20308 -13.09762 -13.05827 -12.86184 -12.70389 -12.60675 -12.47815 -12.42800 -12.25451 -11.57223 -11.48734 -11.41911 -11.26393 -10.94043 -10.81245 -10.57274 -10.13184 -9.59378 -9.27754 -8.53606 -8.23121 -6.33009 0.67137 1.20418 1.35952 1.36794 1.48171 1.61153 1.76405 1.84203 1.93736 2.37563 2.47299 2.81825 3.09614 3.64828 3.69245 3.93192 4.09247 4.13143 4.18742 4.20220 4.24683 4.28480 4.35565 4.48099 4.50824 4.52811 4.68733 4.70337 4.78022 4.92899 4.97455 5.01028 5.10406 5.12212 5.13939 5.17731 5.34084 5.50636 5.73281 5.74081 5.84528 5.88046 6.24793 6.40855 6.46728 6.82091 6.95903 7.35419 7.42221 8.88105 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.003390 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.457457 B = 8258.773743 C =10425.814002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.381 5.381 3 C 0.060 3.940 4 C -0.197 4.197 5 C 0.248 3.752 6 H 0.155 0.845 7 C -0.452 4.452 8 S 1.319 4.681 9 O -0.927 6.927 10 C -0.461 4.461 11 C 0.122 3.878 12 N -0.619 5.619 13 C 0.511 3.489 14 O -0.540 6.540 15 C -0.133 4.133 16 C -0.075 4.075 17 C 0.028 3.972 18 C -0.548 4.548 19 H 0.045 0.955 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.957 3.043 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.269 1.269 26 C 0.057 3.943 27 N -0.347 5.347 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.198 0.802 32 H 0.141 0.859 33 H 0.059 0.941 34 H 0.152 0.848 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.039 0.961 41 H 0.025 0.975 42 H -0.005 1.005 43 H 0.006 0.994 44 H 0.265 0.735 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 10.182 -25.730 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.165 5.165 3 C -0.086 4.086 4 C -0.210 4.210 5 C 0.144 3.856 6 H 0.172 0.828 7 C -0.590 4.590 8 S 1.520 4.480 9 O -0.923 6.923 10 C -0.601 4.601 11 C -0.001 4.001 12 N -0.354 5.354 13 C 0.300 3.700 14 O -0.417 6.417 15 C -0.172 4.172 16 C -0.113 4.113 17 C -0.009 4.009 18 C -0.586 4.586 19 H 0.064 0.936 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.782 3.218 23 H -0.201 1.201 24 H -0.199 1.199 25 H -0.194 1.194 26 C -0.129 4.129 27 N -0.169 5.169 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.122 0.878 31 H 0.215 0.785 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.170 0.830 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.166 0.834 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.013 0.987 43 H 0.024 0.976 44 H 0.074 0.926 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.365 9.055 -26.445 27.955 hybrid contribution 0.457 -2.487 2.714 3.710 sum 0.822 6.567 -23.731 24.637 Atomic orbital electron populations 1.21998 0.73178 1.04786 1.04153 1.48428 1.07232 1.03536 1.57265 1.22470 0.90354 0.93922 1.01865 1.19587 0.94348 0.92872 1.14182 1.19095 0.87935 0.97023 0.81526 0.82801 1.28111 1.12964 1.10109 1.07832 1.69401 0.82613 1.06287 0.89737 1.92998 1.46871 1.74846 1.77538 1.28059 1.05251 1.07467 1.19276 1.21667 0.80968 0.92362 1.05116 1.48341 1.35180 1.46261 1.05594 1.20928 0.80622 0.81132 0.87330 1.90854 1.35734 1.31205 1.83859 1.21746 1.01534 1.02757 0.91198 1.21074 0.97976 0.97702 0.94568 1.18997 0.95072 0.95439 0.91371 1.21661 1.21761 1.21910 0.93309 0.93627 1.25845 0.97193 0.96049 1.00065 1.70047 1.38311 1.33705 1.14586 0.85565 0.79217 0.78584 0.78417 1.20053 1.19904 1.19381 1.23407 0.94266 0.95759 0.99463 1.77124 1.02685 1.10526 1.26554 0.89027 0.90920 0.87779 0.78513 0.84097 0.92162 0.83018 0.92168 0.88273 0.83425 0.89007 0.86862 0.94205 0.95650 0.98662 0.97599 0.92594 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 11.47 127.77 1.47 3.20 16 2 N -0.38 -9.90 4.01 -369.56 -1.48 -11.38 16 3 C 0.06 1.29 10.30 83.54 0.86 2.15 16 4 C -0.20 -4.43 3.02 -20.14 -0.06 -4.49 16 5 C 0.25 3.37 3.17 44.35 0.14 3.52 16 6 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 7 C -0.45 -6.49 5.40 72.06 0.39 -6.10 16 8 S 1.32 14.83 13.71 -56.49 -0.77 14.06 16 9 O -0.93 -25.37 18.14 -148.98 -2.70 -28.08 16 10 C -0.46 -5.16 6.65 72.06 0.48 -4.68 16 11 C 0.12 1.06 6.14 86.48 0.53 1.59 16 12 N -0.62 -10.27 2.79 -801.71 -2.24 -12.51 16 13 C 0.51 14.15 7.54 87.65 0.66 14.81 16 14 O -0.54 -19.35 10.85 -3.04 -0.03 -19.38 16 15 C -0.13 -4.03 4.02 29.85 0.12 -3.91 16 16 C -0.07 -3.27 4.44 30.60 0.14 -3.13 16 17 C 0.03 1.49 4.97 29.85 0.15 1.64 16 18 C -0.55 -32.49 9.11 25.60 0.23 -32.26 16 19 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 20 C 0.01 0.40 5.46 84.65 0.46 0.86 16 21 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 22 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 23 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 C 0.06 1.70 9.66 85.24 0.82 2.52 16 27 N -0.35 -11.44 12.58 -57.02 -0.72 -12.16 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.32 7.17 -2.39 -0.02 1.31 16 34 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.05 5.73 -2.39 -0.01 1.03 16 37 H 0.15 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.09 2.64 7.63 -2.39 -0.02 2.62 16 39 H 0.11 2.85 7.91 -2.39 -0.02 2.83 16 40 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 41 H 0.02 1.20 8.10 -2.39 -0.02 1.18 16 42 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.16 4.57 7.23 -2.91 -0.02 4.55 16 Total: -1.00 -96.88 374.95 1.74 -95.14 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.98 Total: 6.83 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 6.39 Total: -24.28 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -4.15 Total: -91.74 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -2.74 Total: -47.46 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 14.83 SS G_CDS: -0.77 Total: 14.06 kcal Total: -96.88 1.74 -95.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466841603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.195 kcal (2) G-P(sol) polarization free energy of solvation -96.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds