Wall clock time and date at job start Sat Apr 11 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47617 * 0.77976 * 3 2 1 5 5 C 1.34770 * 120.00013 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00157 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00000 * 179.97438 * 5 4 3 8 8 H 1.08997 * 109.47045 * 300.00376 * 7 5 4 9 9 C 1.53003 * 109.46992 * 60.00048 * 7 5 4 10 10 N 1.46895 * 109.47369 * 180.02562 * 7 5 4 11 11 C 1.47475 * 110.99917 * 77.06481 * 10 7 5 12 12 C 1.53516 * 87.93349 * 138.70284 * 11 10 7 13 13 C 1.47484 * 111.00051 * 173.03683 * 10 7 5 14 14 H 1.09002 * 113.47211 * 336.12560 * 13 10 7 15 15 C 1.53000 * 113.47580 * 106.53026 * 13 10 7 16 16 N 1.46503 * 109.46917 * 184.24613 * 15 13 10 17 17 C 1.34776 * 119.99931 * 175.85114 * 16 15 13 18 18 O 1.21280 * 119.99947 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99946 * 180.02562 * 17 16 15 20 20 S 1.80999 * 109.47073 * 179.97438 * 19 17 16 21 21 C 1.76204 * 99.99987 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99866 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99937 * 180.02562 * 21 20 19 24 24 N 1.31628 * 119.99822 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00165 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47097 * 90.00259 * 25 23 21 27 27 H 1.48497 * 109.47507 * 210.00047 * 25 23 21 28 28 H 1.48506 * 109.47059 * 330.00409 * 25 23 21 29 29 H 4.40640 * 5.51481 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.47157 * 240.77306 * 3 2 1 31 31 H 1.09007 * 109.46564 * 120.78167 * 3 2 1 32 32 H 0.96996 * 119.99342 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.47592 * 305.59489 * 9 7 5 34 34 H 1.09005 * 109.47082 * 65.59274 * 9 7 5 35 35 H 1.08997 * 109.47330 * 185.59612 * 9 7 5 36 36 H 1.08998 * 113.48007 * 253.46781 * 11 10 7 37 37 H 1.08996 * 113.47729 * 23.93794 * 11 10 7 38 38 H 1.08997 * 114.17278 * 220.32661 * 12 11 10 39 39 H 1.09002 * 114.16792 * 87.62105 * 12 11 10 40 40 H 1.08998 * 109.47055 * 64.25000 * 15 13 10 41 41 H 1.08995 * 109.47287 * 304.24465 * 15 13 10 42 42 H 0.97006 * 119.99823 * 355.84257 * 16 15 13 43 43 H 1.09003 * 109.46818 * 299.99524 * 19 17 16 44 44 H 1.09002 * 109.47391 * 59.99133 * 19 17 16 45 45 H 0.97006 * 120.00140 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1350 -1.3802 -0.0188 5 6 4.4602 -1.6257 -0.0227 6 8 5.2478 -0.7035 -0.0111 7 6 4.9633 -3.0461 -0.0414 8 1 4.6006 -3.5717 0.8419 9 6 4.4530 -3.7513 -1.2997 10 7 6.4322 -3.0454 -0.0415 11 6 6.9607 -2.7546 1.3042 12 6 8.0174 -3.8419 1.0635 13 6 6.9614 -4.4139 0.1073 14 1 6.2639 -5.0992 0.5889 15 6 7.5528 -4.9826 -1.1841 16 7 7.9577 -6.3734 -0.9649 17 6 8.4307 -7.1074 -1.9915 18 8 8.5207 -6.6167 -3.0969 19 6 8.8466 -8.5382 -1.7661 20 16 9.4320 -9.2489 -3.3243 21 6 9.8413 -10.8754 -2.7841 22 1 9.6982 -11.1530 -1.7502 23 6 10.3485 -11.7995 -3.6870 24 7 10.6537 -13.0147 -3.2835 25 14 10.5966 -11.3192 -5.4750 26 1 11.9632 -10.7661 -5.6539 27 1 10.4307 -12.5169 -6.3370 28 1 9.5934 -10.2925 -5.8555 29 1 -1.0498 -0.0005 -0.0002 30 1 3.0091 0.5026 0.8968 31 1 3.0090 0.5268 -0.8830 32 1 2.5050 -2.1176 -0.0292 33 1 3.3675 -3.6653 -1.3496 34 1 4.8951 -3.2868 -2.1812 35 1 4.7327 -4.8042 -1.2649 36 1 7.3814 -1.7536 1.3986 37 1 6.2634 -2.9969 2.1062 38 1 8.2190 -4.4685 1.9323 39 1 8.9206 -3.4846 0.5688 40 1 8.4218 -4.3930 -1.4762 41 1 6.8040 -4.9426 -1.9751 42 1 7.8854 -6.7659 -0.0807 43 1 9.6476 -8.5716 -1.0275 44 1 7.9937 -9.1117 -1.4032 45 1 11.0079 -13.6607 -3.9146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483633345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:43 Heat of formation + Delta-G solvation = -5.215198 kcal Electronic energy + Delta-G solvation = -25865.008990 eV Core-core repulsion = 22010.625927 eV Total energy + Delta-G solvation = -3854.383063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96829 -40.62924 -40.01240 -36.52407 -35.74467 -34.65362 -34.41005 -33.18668 -31.63228 -29.03079 -28.53659 -27.85303 -27.67678 -24.59537 -23.95213 -21.89051 -21.38139 -20.76911 -19.85515 -19.68615 -18.11571 -17.84562 -17.61059 -17.36743 -17.04815 -16.76985 -16.60343 -16.24289 -15.82836 -15.64463 -15.25450 -15.08723 -14.89888 -14.78248 -14.55057 -14.33221 -14.20186 -13.61987 -13.49718 -13.33014 -13.18070 -13.07214 -13.00073 -12.80881 -12.62324 -12.14097 -11.95697 -11.85499 -11.82630 -11.52368 -11.47969 -11.15612 -11.00885 -10.79361 -10.50357 -10.19515 -10.10727 -9.87966 -8.97349 -8.49999 -6.20282 1.00819 1.32629 1.34345 1.48367 1.53098 1.57075 1.60285 1.79810 2.13121 2.26461 2.44092 2.73150 2.88508 3.03217 3.31528 3.44664 3.56392 3.77427 3.88662 3.93407 4.00985 4.09830 4.19166 4.27236 4.31907 4.45584 4.50200 4.51056 4.65092 4.68552 4.73274 4.83807 4.84752 4.97406 5.00698 5.15310 5.22050 5.24789 5.26416 5.43617 5.72491 5.97279 6.13310 6.43840 6.50943 6.54112 6.95691 7.14334 7.23878 8.62195 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023261 B = 0.001773 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.462651 B =15786.812797 C =16404.578132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.248 4.248 3 C 0.233 3.767 4 N -0.719 5.719 5 C 0.522 3.478 6 O -0.561 6.561 7 C 0.033 3.967 8 H 0.105 0.895 9 C -0.143 4.143 10 N -0.468 5.468 11 C 0.007 3.993 12 C -0.134 4.134 13 C 0.029 3.971 14 H 0.114 0.886 15 C 0.141 3.859 16 N -0.706 5.706 17 C 0.535 3.465 18 O -0.566 6.566 19 C -0.109 4.109 20 S -0.180 6.180 21 C -0.527 4.527 22 H 0.064 0.936 23 C 0.047 3.953 24 N -0.916 5.916 25 Si 0.913 3.087 26 H -0.264 1.264 27 H -0.259 1.259 28 H -0.237 1.237 29 H 0.252 0.748 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.415 0.585 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.419 0.581 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.729 24.145 14.570 34.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.249 4.249 3 C 0.111 3.889 4 N -0.373 5.373 5 C 0.308 3.692 6 O -0.438 6.438 7 C -0.079 4.079 8 H 0.123 0.877 9 C -0.201 4.201 10 N -0.192 5.192 11 C -0.121 4.121 12 C -0.171 4.171 13 C -0.080 4.080 14 H 0.132 0.868 15 C 0.017 3.983 16 N -0.360 5.360 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.260 4.260 20 S 0.046 5.954 21 C -0.675 4.675 22 H 0.082 0.918 23 C -0.159 4.159 24 N -0.554 5.554 25 Si 0.735 3.265 26 H -0.189 1.189 27 H -0.184 1.184 28 H -0.161 1.161 29 H 0.269 0.731 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.252 0.748 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.256 0.744 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.805 25.909 12.147 34.800 hybrid contribution -0.493 -1.634 1.417 2.218 sum -20.298 24.276 13.564 34.428 Atomic orbital electron populations 1.25857 0.96723 0.95128 0.98753 1.22971 0.94468 1.04697 1.02743 1.17943 0.83833 0.83943 1.03218 1.45898 1.06857 1.08808 1.75713 1.20743 0.81893 0.91528 0.75034 1.90718 1.56214 1.47115 1.49746 1.22308 0.91269 0.92442 1.01927 0.87719 1.21846 1.02134 1.00810 0.95296 1.68824 1.06901 1.14989 1.28456 1.23703 0.97488 1.00701 0.90257 1.23264 0.96784 0.97384 0.99705 1.23622 0.98032 0.91787 0.94583 0.86839 1.21129 0.99180 0.80509 0.97512 1.45553 1.65593 1.12767 1.12110 1.19964 0.76497 0.87058 0.84429 1.90706 1.54877 1.73095 1.25721 1.23261 1.05827 0.95292 1.01639 1.84785 1.84423 1.11496 1.14691 1.22464 1.49277 0.96734 0.99025 0.91760 1.25528 0.93392 0.93994 1.02944 1.70013 1.43015 1.05022 1.37393 0.85892 0.80780 0.79770 0.80084 1.18853 1.18379 1.16132 0.73139 0.89355 0.89924 0.74809 0.89429 0.93062 0.90591 0.90783 0.89465 0.87630 0.89704 0.92696 0.92262 0.74402 0.86678 0.86475 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 19.25 74.32 1.43 0.40 16 2 C -0.25 -2.65 13.46 31.12 0.42 -2.23 16 3 C 0.23 2.87 6.15 84.57 0.52 3.39 16 4 N -0.72 -8.20 5.39 -472.14 -2.55 -10.75 16 5 C 0.52 8.81 7.03 87.66 0.62 9.43 16 6 O -0.56 -14.47 15.92 -3.04 -0.05 -14.52 16 7 C 0.03 0.41 2.08 44.17 0.09 0.51 16 8 H 0.11 0.73 7.56 -2.39 -0.02 0.71 16 9 C -0.14 -1.73 8.50 71.98 0.61 -1.11 16 10 N -0.47 -7.85 5.53 -881.27 -4.88 -12.73 16 11 C 0.01 0.10 6.92 83.58 0.58 0.67 16 12 C -0.13 -1.61 8.00 30.94 0.25 -1.36 16 13 C 0.03 0.39 2.22 42.19 0.09 0.48 16 14 H 0.11 0.91 7.82 -2.39 -0.02 0.89 16 15 C 0.14 2.93 5.66 86.38 0.49 3.42 16 16 N -0.71 -15.14 5.55 -463.06 -2.57 -17.71 16 17 C 0.54 17.72 7.85 87.66 0.69 18.41 16 18 O -0.57 -24.20 15.86 -3.03 -0.05 -24.25 16 19 C -0.11 -3.93 6.16 71.24 0.44 -3.50 16 20 S -0.18 -9.03 18.55 -56.49 -1.05 -10.07 16 21 C -0.53 -30.35 10.04 67.95 0.68 -29.67 16 22 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 23 C 0.05 2.73 5.50 84.86 0.47 3.20 16 24 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 25 Si 0.91 44.93 27.74 68.60 1.90 46.84 16 26 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 27 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 29 H 0.25 -0.18 7.80 -4.43 -0.03 -0.21 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.42 2.62 7.80 -92.71 -0.72 1.89 16 33 H 0.09 0.63 7.41 -2.39 -0.02 0.62 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.08 0.89 6.95 -2.39 -0.02 0.87 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 0.83 7.65 -2.39 -0.02 0.81 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 1.30 7.95 -2.39 -0.02 1.29 16 40 H 0.05 1.39 7.89 -2.39 -0.02 1.37 16 41 H 0.06 1.43 6.99 -2.39 -0.02 1.41 16 42 H 0.42 5.76 8.48 -92.70 -0.79 4.97 16 43 H 0.12 3.76 8.14 -2.39 -0.02 3.75 16 44 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 45 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -82.63 395.90 -2.10 -84.72 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -0.53 Total: 11.52 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 7.37 Total: 2.04 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -9.69 Total: -96.28 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -0.10 Total: -38.77 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.84 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.07 kcal Total: -82.63 -2.10 -84.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483633345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.508 kcal (2) G-P(sol) polarization free energy of solvation -82.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds