Wall clock time and date at job start Sat Apr 11 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99959 * 2 1 4 4 C 1.53005 * 109.47028 * 89.99901 * 3 2 1 5 5 H 1.09005 * 109.47310 * 305.00257 * 4 3 2 6 6 O 1.42901 * 109.47056 * 65.00195 * 4 3 2 7 7 C 1.52992 * 109.47277 * 185.00044 * 4 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47028 * 60.00888 * 13 11 9 15 15 H 1.48503 * 109.46851 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47412 * 300.00497 * 13 11 9 17 17 C 1.34775 * 120.00474 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00178 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99399 * 359.97438 * 17 2 1 20 20 C 1.50700 * 109.46716 * 180.02562 * 19 17 2 21 21 C 1.33635 * 122.75081 * 85.02535 * 20 19 17 22 22 S 1.76198 * 107.92729 * 180.02562 * 21 20 19 23 23 C 1.70979 * 90.28217 * 0.02562 * 22 21 20 24 24 C 1.50696 * 124.91827 * 180.02562 * 23 22 21 25 25 C 1.53001 * 117.50113 * 8.59551 * 24 23 22 26 26 C 1.52999 * 59.99977 * 252.51331 * 25 24 23 27 27 N 1.29028 * 110.16612 * 359.73388 * 23 22 21 28 28 H 1.08997 * 109.47032 * 89.99610 * 1 2 3 29 29 H 1.08997 * 109.46896 * 209.99713 * 1 2 3 30 30 H 1.08998 * 109.46684 * 329.99938 * 1 2 3 31 31 H 1.09005 * 109.47213 * 330.00487 * 3 2 1 32 32 H 1.08996 * 109.47319 * 209.99820 * 3 2 1 33 33 H 0.96700 * 113.99645 * 59.99638 * 6 4 3 34 34 H 1.09004 * 109.47330 * 60.00123 * 7 4 3 35 35 H 1.09005 * 109.47124 * 300.00327 * 7 4 3 36 36 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 37 37 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 38 38 H 1.08994 * 109.47248 * 300.00314 * 19 17 2 39 39 H 1.08993 * 109.47026 * 60.00652 * 19 17 2 40 40 H 1.07999 * 126.03960 * 359.97438 * 21 20 19 41 41 H 1.09000 * 115.55010 * 154.30615 * 24 23 22 42 42 H 1.08998 * 117.49451 * 0.02562 * 25 24 23 43 43 H 1.08997 * 117.50015 * 145.02310 * 25 24 23 44 44 H 1.09011 * 117.49519 * 252.50610 * 26 25 24 45 45 H 1.09004 * 117.52106 * 107.48123 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3210 0.7725 2.0814 7 6 3.1060 3.0938 1.4445 8 7 3.3507 3.5164 2.8256 9 6 3.9327 4.7301 3.0774 10 1 4.2155 5.3739 2.2576 11 6 4.1641 5.1308 4.3861 12 7 3.8245 4.3440 5.3851 13 14 4.9588 6.7861 4.7295 14 1 4.1111 7.8682 4.1677 15 1 5.0955 6.9748 6.1961 16 1 6.3019 6.8310 4.0977 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 6 2.3648 -3.6177 -0.0005 21 6 2.9087 -4.1038 1.1192 22 16 3.9865 -5.4233 0.6700 23 6 3.5992 -5.1897 -0.9789 24 6 4.1606 -5.9984 -2.1198 25 6 4.9899 -7.2351 -1.7683 26 6 5.6778 -5.9835 -2.3168 27 7 2.7519 -4.2247 -1.1044 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.6084 2.0285 -0.5138 32 1 3.1499 1.1385 -0.5138 33 1 4.1837 0.6812 1.6542 34 1 2.4436 3.8093 0.9571 35 1 4.0524 3.0493 0.9054 36 1 3.1004 2.9366 3.5618 37 1 3.9865 4.6238 6.2995 38 1 0.7591 -2.5302 0.8896 39 1 0.7586 -2.5298 -0.8903 40 1 2.7214 -3.7498 2.1222 41 1 3.5376 -6.0470 -3.0129 42 1 5.1290 -7.4641 -0.7117 43 1 4.9124 -8.0978 -2.4300 44 1 6.0530 -6.0227 -3.3396 45 1 6.2698 -5.3884 -1.6215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486303665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:48 Heat of formation + Delta-G solvation = 3.720855 kcal Electronic energy + Delta-G solvation = -26551.337053 eV Core-core repulsion = 22697.341487 eV Total energy + Delta-G solvation = -3853.995566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53865 -39.48188 -37.61335 -37.11846 -35.21931 -33.93812 -32.30009 -31.23418 -29.67435 -28.20492 -26.90103 -25.96195 -25.00861 -22.88973 -22.79260 -21.64124 -21.08280 -20.13318 -19.17246 -17.86645 -17.22463 -17.12203 -16.54218 -16.40847 -15.86552 -15.35911 -15.08202 -14.78268 -14.49661 -14.38051 -14.17309 -13.80985 -13.48311 -13.28218 -13.16535 -12.92171 -12.64299 -12.57245 -12.41371 -12.13374 -12.10423 -12.03046 -11.52563 -11.38225 -11.19219 -10.98454 -10.90790 -10.78285 -10.60349 -10.16126 -9.89533 -9.82421 -9.73537 -9.55980 -9.47907 -8.86317 -8.80059 -8.46515 -6.88813 -5.71920 -3.01189 0.52958 1.16850 1.55616 2.44436 2.69733 3.05306 3.39671 3.46004 3.49947 3.51452 3.66697 4.33516 4.47136 4.48316 4.53291 4.60734 4.81054 4.89061 4.92409 4.96927 5.07668 5.12450 5.17323 5.20817 5.28915 5.37588 5.40215 5.50479 5.54774 5.57153 5.59212 5.64425 5.70407 5.78159 5.93703 6.06123 6.27984 6.48223 6.56217 6.78104 7.35009 7.58706 7.70943 8.20864 8.26114 8.46639 9.57619 10.16216 10.52168 11.50445 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.002132 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.273466 B =13131.943563 C =13836.240189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.612 5.612 3 C 0.086 3.914 4 C 0.087 3.913 5 H 0.094 0.906 6 O -0.547 6.547 7 C 0.125 3.875 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.524 3.476 18 O -0.524 6.524 19 C -0.065 4.065 20 C 0.089 3.911 21 C -0.238 4.238 22 S 0.123 5.877 23 C 0.077 3.923 24 C -0.085 4.085 25 C -0.170 4.170 26 C -0.159 4.159 27 N -0.462 5.462 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.374 0.626 34 H 0.024 0.976 35 H 0.020 0.980 36 H 0.389 0.611 37 H 0.255 0.745 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.178 0.822 41 H 0.132 0.868 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 -24.270 -16.118 29.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.345 5.345 3 C -0.037 4.037 4 C 0.026 3.974 5 H 0.112 0.888 6 O -0.352 6.352 7 C -0.004 4.004 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.579 5.579 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.310 3.690 18 O -0.399 6.399 19 C -0.107 4.107 20 C -0.043 4.043 21 C -0.377 4.377 22 S 0.378 5.622 23 C -0.201 4.201 24 C -0.107 4.107 25 C -0.208 4.208 26 C -0.198 4.198 27 N -0.176 5.176 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.221 0.779 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.196 0.804 41 H 0.150 0.850 42 H 0.117 0.883 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.360 -24.720 -15.686 29.763 hybrid contribution 0.018 1.807 0.162 1.814 sum -5.342 -22.913 -15.525 28.187 Atomic orbital electron populations 1.21841 0.79586 1.03619 1.01729 1.47676 1.06778 1.05912 1.74174 1.22254 0.98275 0.84530 0.98665 1.22472 0.94456 0.89040 0.91427 0.88791 1.86529 1.29183 1.62478 1.56973 1.21236 0.96997 0.92452 0.89680 1.42229 1.73797 1.20119 1.00807 1.19183 1.32136 0.94279 0.91774 0.91346 1.24766 1.02020 0.98609 0.95598 1.69674 1.53036 1.36910 0.98241 0.86253 0.79236 0.83722 0.76871 1.21290 1.21672 1.21284 1.20193 0.88012 0.84649 0.76102 1.90688 1.13791 1.86990 1.48424 1.20204 0.96304 0.88809 1.05431 1.19393 1.00222 0.98008 0.86677 1.26801 1.04124 1.02470 1.04335 1.83788 1.43363 1.32039 1.02989 1.25962 0.98951 0.98157 0.97007 1.20384 0.94573 0.99072 0.96630 1.23145 1.02876 0.92130 1.02619 1.23158 0.92683 1.00511 1.03480 1.65876 1.12928 1.07501 1.31321 0.92506 0.91050 0.90581 0.89700 0.89565 0.77893 0.95823 0.96234 0.77678 0.93477 0.87218 0.87347 0.80438 0.85018 0.88314 0.87273 0.87430 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.24 59.85 0.61 1.22 16 2 N -0.61 -7.40 2.86 -181.56 -0.52 -7.92 16 3 C 0.09 1.16 5.11 -4.04 -0.02 1.14 16 4 C 0.09 1.48 3.30 -26.73 -0.09 1.39 16 5 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 6 O -0.55 -10.59 11.95 -42.91 -0.51 -11.10 16 7 C 0.13 2.56 5.92 -4.05 -0.02 2.53 16 8 N -0.72 -19.15 5.49 -59.91 -0.33 -19.48 16 9 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.10 13.06 55.49 0.72 -28.38 16 13 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 C 0.52 7.23 7.29 -10.98 -0.08 7.15 16 18 O -0.52 -9.26 14.59 -2.11 -0.03 -9.29 16 19 C -0.06 -0.69 4.67 -29.03 -0.14 -0.82 16 20 C 0.09 1.12 5.23 -84.22 -0.44 0.68 16 21 C -0.24 -2.80 11.14 29.12 0.32 -2.48 16 22 S 0.12 1.24 21.94 -107.50 -2.36 -1.12 16 23 C 0.08 0.87 7.04 -13.46 -0.09 0.77 16 24 C -0.08 -0.70 6.33 -91.77 -0.58 -1.28 16 25 C -0.17 -1.00 10.01 -26.73 -0.27 -1.26 16 26 C -0.16 -1.10 10.23 -26.73 -0.27 -1.37 16 27 N -0.46 -6.13 10.53 -8.06 -0.08 -6.21 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.45 6.44 -51.93 -0.33 0.11 16 30 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.09 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.37 6.94 8.75 45.56 0.40 7.34 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.39 11.07 7.54 -40.82 -0.31 10.77 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 38 H 0.11 0.89 7.40 -51.93 -0.38 0.50 16 39 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 40 H 0.18 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.10 0.58 7.22 -51.93 -0.38 0.20 16 43 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 45 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -36.85 391.67 -9.55 -46.39 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.00 Total: 13.31 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.31 Total: 0.00 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.21 Total: -61.99 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.54 Total: -20.39 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.36 Total: -1.12 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.85 -9.55 -46.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486303665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.116 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds