Wall clock time and date at job start Sat Apr 11 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99959 * 2 1 4 4 C 1.53005 * 109.47028 * 89.99901 * 3 2 1 5 5 H 1.09005 * 109.47310 * 305.00257 * 4 3 2 6 6 O 1.42901 * 109.47056 * 65.00195 * 4 3 2 7 7 C 1.52992 * 109.47277 * 185.00044 * 4 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47028 * 60.00888 * 13 11 9 15 15 H 1.48503 * 109.46851 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47412 * 300.00497 * 13 11 9 17 17 C 1.34775 * 120.00474 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00178 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99399 * 359.97438 * 17 2 1 20 20 C 1.50700 * 109.46716 * 180.02562 * 19 17 2 21 21 C 1.33635 * 122.75081 * 85.02535 * 20 19 17 22 22 S 1.76198 * 107.92729 * 180.02562 * 21 20 19 23 23 C 1.70979 * 90.28217 * 0.02562 * 22 21 20 24 24 C 1.50696 * 124.91827 * 180.02562 * 23 22 21 25 25 C 1.53001 * 117.50113 * 8.59551 * 24 23 22 26 26 C 1.52999 * 59.99977 * 252.51331 * 25 24 23 27 27 N 1.29028 * 110.16612 * 359.73388 * 23 22 21 28 28 H 1.08997 * 109.47032 * 89.99610 * 1 2 3 29 29 H 1.08997 * 109.46896 * 209.99713 * 1 2 3 30 30 H 1.08998 * 109.46684 * 329.99938 * 1 2 3 31 31 H 1.09005 * 109.47213 * 330.00487 * 3 2 1 32 32 H 1.08996 * 109.47319 * 209.99820 * 3 2 1 33 33 H 0.96700 * 113.99645 * 59.99638 * 6 4 3 34 34 H 1.09004 * 109.47330 * 60.00123 * 7 4 3 35 35 H 1.09005 * 109.47124 * 300.00327 * 7 4 3 36 36 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 37 37 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 38 38 H 1.08994 * 109.47248 * 300.00314 * 19 17 2 39 39 H 1.08993 * 109.47026 * 60.00652 * 19 17 2 40 40 H 1.07999 * 126.03960 * 359.97438 * 21 20 19 41 41 H 1.09000 * 115.55010 * 154.30615 * 24 23 22 42 42 H 1.08998 * 117.49451 * 0.02562 * 25 24 23 43 43 H 1.08997 * 117.50015 * 145.02310 * 25 24 23 44 44 H 1.09011 * 117.49519 * 252.50610 * 26 25 24 45 45 H 1.09004 * 117.52106 * 107.48123 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3210 0.7725 2.0814 7 6 3.1060 3.0938 1.4445 8 7 3.3507 3.5164 2.8256 9 6 3.9327 4.7301 3.0774 10 1 4.2155 5.3739 2.2576 11 6 4.1641 5.1308 4.3861 12 7 3.8245 4.3440 5.3851 13 14 4.9588 6.7861 4.7295 14 1 4.1111 7.8682 4.1677 15 1 5.0955 6.9748 6.1961 16 1 6.3019 6.8310 4.0977 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 6 2.3648 -3.6177 -0.0005 21 6 2.9087 -4.1038 1.1192 22 16 3.9865 -5.4233 0.6700 23 6 3.5992 -5.1897 -0.9789 24 6 4.1606 -5.9984 -2.1198 25 6 4.9899 -7.2351 -1.7683 26 6 5.6778 -5.9835 -2.3168 27 7 2.7519 -4.2247 -1.1044 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 1.6084 2.0285 -0.5138 32 1 3.1499 1.1385 -0.5138 33 1 4.1837 0.6812 1.6542 34 1 2.4436 3.8093 0.9571 35 1 4.0524 3.0493 0.9054 36 1 3.1004 2.9366 3.5618 37 1 3.9865 4.6238 6.2995 38 1 0.7591 -2.5302 0.8896 39 1 0.7586 -2.5298 -0.8903 40 1 2.7214 -3.7498 2.1222 41 1 3.5376 -6.0470 -3.0129 42 1 5.1290 -7.4641 -0.7117 43 1 4.9124 -8.0978 -2.4300 44 1 6.0530 -6.0227 -3.3396 45 1 6.2698 -5.3884 -1.6215 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486303665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:47 Heat of formation + Delta-G solvation = -23.327563 kcal Electronic energy + Delta-G solvation = -26552.509960 eV Core-core repulsion = 22697.341487 eV Total energy + Delta-G solvation = -3855.168474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46560 -40.44831 -38.69552 -38.06429 -36.37820 -35.84625 -33.32331 -33.04537 -31.03331 -29.23569 -27.93166 -26.90151 -26.35719 -24.53015 -23.37325 -22.75766 -22.28952 -21.00974 -20.11180 -19.24845 -18.67769 -18.22524 -17.76836 -17.17431 -16.92387 -16.54490 -16.47787 -16.23305 -15.67416 -15.41417 -15.29154 -15.04219 -14.82773 -14.39231 -14.18664 -14.13317 -13.88885 -13.68313 -13.38158 -13.20678 -13.03962 -12.93762 -12.75583 -12.64844 -12.54807 -12.23233 -12.21342 -12.03556 -11.83292 -11.81323 -11.51512 -11.16930 -10.98231 -10.82928 -10.67852 -10.32492 -9.61413 -9.53656 -9.03171 -7.96069 -5.26225 -0.30713 0.36404 0.71920 1.44952 1.49171 1.55020 1.56049 1.68950 2.15691 2.54495 2.77097 3.02031 3.34695 3.47167 3.63905 3.74326 3.78621 3.81580 3.97998 4.06925 4.10772 4.19824 4.21700 4.32172 4.38293 4.44565 4.49506 4.52136 4.66385 4.70449 4.71195 4.83046 4.89569 4.89943 4.97290 5.02692 5.14067 5.15297 5.23452 5.44201 5.51388 6.24403 6.40580 6.74197 6.77139 7.22577 7.30831 8.07163 8.30416 9.27140 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.002132 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.273466 B =13131.943563 C =13836.240189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.610 5.610 3 C 0.097 3.903 4 C 0.097 3.903 5 H 0.092 0.908 6 O -0.564 6.564 7 C 0.123 3.877 8 N -0.740 5.740 9 C -0.250 4.250 10 H 0.077 0.923 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.979 3.021 14 H -0.274 1.274 15 H -0.295 1.295 16 H -0.279 1.279 17 C 0.516 3.484 18 O -0.572 6.572 19 C -0.059 4.059 20 C 0.073 3.927 21 C -0.261 4.261 22 S 0.149 5.851 23 C 0.069 3.931 24 C -0.107 4.107 25 C -0.150 4.150 26 C -0.161 4.161 27 N -0.493 5.493 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.374 0.626 34 H 0.041 0.959 35 H 0.019 0.981 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.184 0.816 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.134 0.866 44 H 0.125 0.875 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -24.685 -17.624 31.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.342 5.342 3 C -0.027 4.027 4 C 0.037 3.963 5 H 0.110 0.890 6 O -0.370 6.370 7 C -0.005 4.005 8 N -0.383 5.383 9 C -0.381 4.381 10 H 0.095 0.905 11 C -0.271 4.271 12 N -0.620 5.620 13 Si 0.807 3.193 14 H -0.199 1.199 15 H -0.221 1.221 16 H -0.205 1.205 17 C 0.304 3.696 18 O -0.451 6.451 19 C -0.101 4.101 20 C -0.059 4.059 21 C -0.400 4.400 22 S 0.405 5.595 23 C -0.209 4.209 24 C -0.129 4.129 25 C -0.187 4.187 26 C -0.200 4.200 27 N -0.208 5.208 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.221 0.779 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.153 0.847 39 H 0.145 0.855 40 H 0.201 0.799 41 H 0.155 0.845 42 H 0.117 0.883 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.191 -25.133 -17.245 31.103 hybrid contribution 0.262 1.881 0.561 1.980 sum -5.928 -23.252 -16.684 29.226 Atomic orbital electron populations 1.22162 0.76808 1.04908 1.03636 1.47782 1.08465 1.04833 1.73154 1.22022 0.98716 0.86088 0.95891 1.22420 0.93347 0.86877 0.93675 0.88969 1.86504 1.29554 1.62982 1.57931 1.21441 0.97508 0.94764 0.86739 1.42439 1.73749 1.19384 1.02744 1.19639 1.31230 0.95133 0.92147 0.90492 1.25667 1.03369 1.02548 0.95519 1.69849 1.54882 1.38953 0.98343 0.85142 0.78486 0.79423 0.76271 1.19945 1.22119 1.20490 1.20795 0.87708 0.85942 0.75152 1.90662 1.15943 1.87748 1.50716 1.20269 0.95909 0.86376 1.07502 1.19733 1.00802 0.98561 0.86796 1.27033 1.04879 1.03448 1.04674 1.83576 1.42597 1.31113 1.02209 1.26541 0.98256 0.97771 0.98289 1.20567 0.95371 1.00672 0.96276 1.23265 1.00324 0.92031 1.03124 1.23237 0.91375 1.01029 1.04325 1.65936 1.14319 1.08611 1.31920 0.90239 0.89095 0.90093 0.86755 0.90973 0.77875 0.94107 0.96275 0.79373 0.94002 0.84667 0.85454 0.79885 0.84460 0.88346 0.84809 0.85680 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 10.24 127.77 1.31 2.18 16 2 N -0.61 -13.77 2.86 -846.74 -2.42 -16.18 16 3 C 0.10 2.49 5.11 86.38 0.44 2.93 16 4 C 0.10 3.27 3.30 30.59 0.10 3.37 16 5 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 6 O -0.56 -22.28 11.95 -141.64 -1.69 -23.97 16 7 C 0.12 4.96 5.92 86.38 0.51 5.47 16 8 N -0.74 -39.41 5.49 -343.45 -1.89 -41.30 16 9 C -0.25 -14.43 9.99 84.04 0.84 -13.59 16 10 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 11 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 12 N -0.97 -61.69 13.06 21.65 0.28 -61.41 16 13 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 15 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 C 0.52 13.92 7.29 87.66 0.64 14.56 16 18 O -0.57 -20.62 14.59 4.32 0.06 -20.56 16 19 C -0.06 -1.17 4.67 29.10 0.14 -1.03 16 20 C 0.07 1.83 5.23 41.52 0.22 2.05 16 21 C -0.26 -6.19 11.14 66.77 0.74 -5.44 16 22 S 0.15 3.00 21.94 -56.49 -1.24 1.76 16 23 C 0.07 1.53 7.04 88.52 0.62 2.16 16 24 C -0.11 -1.69 6.33 -11.54 -0.07 -1.76 16 25 C -0.15 -1.49 10.01 30.59 0.31 -1.18 16 26 C -0.16 -2.04 10.23 30.59 0.31 -1.73 16 27 N -0.49 -13.08 10.53 -179.40 -1.89 -14.97 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.85 6.44 -2.39 -0.02 0.83 16 30 H 0.08 1.02 8.07 -2.39 -0.02 1.00 16 31 H 0.11 2.26 8.07 -2.38 -0.02 2.24 16 32 H 0.07 2.10 7.42 -2.39 -0.02 2.08 16 33 H 0.37 14.44 8.75 -74.06 -0.65 13.79 16 34 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.37 21.79 7.54 -92.71 -0.70 21.09 16 37 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.14 1.92 7.40 -2.39 -0.02 1.90 16 39 H 0.13 2.01 8.11 -2.39 -0.02 1.99 16 40 H 0.18 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.10 1.00 7.22 -2.39 -0.02 0.98 16 43 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -81.04 391.67 -0.50 -81.54 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.32 Total: 42.08 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 6.57 Total: 3.74 kcal Atomic # 7 Polarization: -127.95 SS G_CDS: -5.91 Total: -133.86 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -1.63 Total: -44.53 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.24 Total: 1.76 kcal Total: -81.04 -0.50 -81.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486303665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.214 kcal (2) G-P(sol) polarization free energy of solvation -81.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds