Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47282 * 328.68724 * 3 2 1 5 5 C 1.34777 * 119.99828 * 179.72337 * 4 3 2 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 3 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 3 8 8 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 9 9 C 1.53007 * 109.47063 * 300.00464 * 7 5 4 10 10 N 1.46896 * 109.47254 * 180.02562 * 7 5 4 11 11 C 1.46902 * 110.99791 * 205.00363 * 10 7 5 12 12 H 1.09000 * 110.64562 * 36.68175 * 11 10 7 13 13 C 1.55154 * 110.72477 * 160.02480 * 11 10 7 14 14 C 1.54907 * 101.58664 * 153.85755 * 13 11 10 15 15 N 1.47418 * 104.83342 * 322.99492 * 14 13 11 16 16 C 1.34778 * 125.64814 * 204.16346 * 15 14 13 17 17 O 1.21283 * 119.99987 * 179.97438 * 16 15 14 18 18 C 1.50701 * 120.00097 * 359.95509 * 16 15 14 19 19 S 1.81000 * 109.47262 * 180.02562 * 18 16 15 20 20 C 1.76196 * 99.99806 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00514 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99833 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00081 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00086 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47182 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47547 * 120.00122 * 24 22 20 27 27 H 1.48502 * 109.47001 * 239.99953 * 24 22 20 28 28 C 1.47026 * 108.70366 * 24.12341 * 15 14 13 29 29 H 4.40638 * 5.51400 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.46956 * 208.68923 * 3 2 1 31 31 H 1.08994 * 109.46861 * 88.69207 * 3 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.46852 * 59.99630 * 9 7 5 34 34 H 1.08993 * 109.46731 * 179.97438 * 9 7 5 35 35 H 1.09003 * 109.46582 * 300.00001 * 9 7 5 36 36 H 1.00901 * 111.00059 * 328.94984 * 10 7 5 37 37 H 1.08997 * 111.00347 * 271.93818 * 13 11 10 38 38 H 1.09011 * 111.00119 * 35.78647 * 13 11 10 39 39 H 1.08992 * 110.36886 * 204.14872 * 14 13 11 40 40 H 1.09005 * 110.45385 * 81.87845 * 14 13 11 41 41 H 1.09003 * 109.46586 * 300.00116 * 18 16 15 42 42 H 1.08997 * 109.46829 * 59.99565 * 18 16 15 43 43 H 0.96997 * 120.00439 * 180.02562 * 23 22 20 44 44 H 1.09003 * 109.88170 * 239.52544 * 28 15 14 45 45 H 1.09005 * 110.01048 * 118.43476 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1791 0.7178 5 6 4.4600 -1.3918 0.8410 6 8 5.2478 -0.6038 0.3619 7 6 4.9631 -2.6087 1.5740 8 1 4.5968 -3.5082 1.0790 9 6 4.4576 -2.5795 3.0178 10 7 6.4320 -2.6104 1.5698 11 6 6.9572 -3.9747 1.7146 12 1 6.3289 -4.6871 1.1800 13 6 8.4258 -4.0530 1.2201 14 6 8.9683 -5.2472 2.0442 15 7 8.3213 -5.1208 3.3627 16 6 8.7956 -5.6195 4.5215 17 8 8.1769 -5.4539 5.5514 18 6 10.0947 -6.3832 4.5375 19 16 10.4586 -6.9194 6.2275 20 6 11.9829 -7.7617 5.9596 21 1 12.4020 -7.8170 4.9658 22 6 12.6456 -8.3532 7.0261 23 7 12.1352 -8.2854 8.2375 24 14 14.2620 -9.2456 6.7423 25 1 14.6175 -9.1797 5.3020 26 1 15.3311 -8.6012 7.5465 27 1 14.1219 -10.6659 7.1527 28 6 7.0733 -4.3598 3.2045 29 1 -1.0498 -0.0002 0.0003 30 1 3.0089 0.9024 0.4934 31 1 3.0093 -0.0226 -1.0274 32 1 2.5049 -1.8095 1.1007 33 1 3.3676 -2.5780 3.0212 34 1 4.8210 -3.4599 3.5478 35 1 4.8237 -1.6800 3.5128 36 1 6.7918 -2.1711 0.7357 37 1 8.4675 -4.2645 0.1516 38 1 8.9671 -3.1369 1.4569 39 1 10.0513 -5.1779 2.1448 40 1 8.6913 -6.1912 1.5746 41 1 10.0109 -7.2560 3.8898 42 1 10.8985 -5.7403 4.1787 43 1 12.5984 -8.6985 8.9829 44 1 7.1075 -3.4598 3.8184 45 1 6.2218 -4.9749 3.4958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490811062.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -5.262374 kcal Electronic energy + Delta-G solvation = -25859.535181 eV Core-core repulsion = 22005.150073 eV Total energy + Delta-G solvation = -3854.385108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.60419 -39.71766 -37.69882 -36.11916 -35.39947 -33.25560 -32.41360 -31.83364 -29.76335 -29.57498 -27.66605 -27.45926 -25.46465 -23.92881 -23.05981 -20.98419 -20.73822 -19.43527 -19.12448 -17.80785 -17.43219 -16.87081 -16.63921 -16.53237 -16.15633 -15.30269 -15.07564 -14.94857 -14.79041 -14.71430 -14.03359 -13.90200 -13.84745 -13.65939 -13.40329 -13.00697 -12.78857 -12.56820 -12.53013 -12.23054 -12.19832 -11.74097 -11.72228 -11.42404 -11.35899 -11.09225 -11.06531 -11.02479 -10.99446 -10.74378 -10.19539 -9.78862 -9.67499 -9.38551 -9.05793 -8.94435 -8.45665 -8.20488 -6.48072 -6.20077 -3.90418 1.77546 2.07867 2.18747 2.83085 2.96080 3.11095 3.22749 3.27246 3.32327 3.59281 3.64528 3.77653 4.14045 4.20899 4.24229 4.41719 4.62368 4.68220 4.84842 4.93075 4.95875 5.02315 5.11564 5.15169 5.18141 5.25263 5.28752 5.45194 5.48819 5.54890 5.62258 5.66211 5.72356 5.82873 5.90792 5.92372 5.96328 6.16357 6.46389 6.54671 6.85453 6.89870 7.00223 7.61468 7.63036 7.70891 8.37115 8.60344 9.25309 10.87444 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037330 B = 0.001683 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.879940 B =16636.572805 C =17164.738983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.213 4.213 3 C 0.231 3.769 4 N -0.728 5.728 5 C 0.518 3.482 6 O -0.527 6.527 7 C 0.069 3.931 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.661 5.661 11 C 0.074 3.926 12 H 0.063 0.937 13 C -0.134 4.134 14 C 0.103 3.897 15 N -0.625 5.625 16 C 0.548 3.452 17 O -0.515 6.515 18 C -0.146 4.146 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.118 3.882 29 H 0.223 0.777 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.405 0.595 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.361 0.639 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.080 0.920 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.726 13.218 -21.061 32.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.214 4.214 3 C 0.109 3.891 4 N -0.382 5.382 5 C 0.303 3.697 6 O -0.402 6.402 7 C -0.045 4.045 8 H 0.092 0.908 9 C -0.202 4.202 10 N -0.297 5.297 11 C -0.036 4.036 12 H 0.081 0.919 13 C -0.172 4.172 14 C -0.021 4.021 15 N -0.364 5.364 16 C 0.337 3.663 17 O -0.389 6.389 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.006 4.006 29 H 0.239 0.761 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.240 0.760 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.184 0.816 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.936 14.125 -18.955 31.577 hybrid contribution 0.962 -1.406 -2.128 2.725 sum -19.974 12.719 -21.083 31.706 Atomic orbital electron populations 1.25079 0.96002 0.97823 0.99489 1.22885 0.94242 1.02571 1.01677 1.18069 0.83181 0.89492 0.98397 1.45952 1.07335 1.26760 1.58116 1.20725 0.81829 0.87665 0.79436 1.90729 1.54994 1.46628 1.47895 1.21568 0.90219 0.95004 0.97664 0.90840 1.21900 1.00000 1.04637 0.93709 1.60322 1.04408 1.17915 1.47064 1.22654 0.95855 0.89027 0.96063 0.91898 1.22966 0.94738 0.99714 0.99775 1.22239 0.98793 0.97852 0.83190 1.48456 1.23821 1.56540 1.07535 1.20017 0.86494 0.78368 0.81439 1.90707 1.59354 1.57619 1.31265 1.23505 0.96165 1.01815 1.08204 1.85405 1.28680 1.69612 0.99744 1.22904 1.07947 1.40207 0.97196 0.90885 1.24989 0.98286 0.95865 0.94428 1.70028 1.38629 1.42386 0.99238 0.86119 0.81882 0.79088 0.78415 1.19615 1.20564 1.20589 1.21952 0.86833 0.96382 0.95418 0.76063 0.88829 0.88974 0.75969 0.92129 0.90555 0.90979 0.81618 0.89835 0.89210 0.89984 0.91323 0.89340 0.89282 0.92248 0.90124 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 19.25 29.55 0.57 -0.15 16 2 C -0.21 -1.18 13.46 -37.12 -0.50 -1.68 16 3 C 0.23 1.32 6.15 -6.83 -0.04 1.28 16 4 N -0.73 -4.13 5.43 -63.16 -0.34 -4.47 16 5 C 0.52 4.15 7.18 -10.98 -0.08 4.08 16 6 O -0.53 -6.06 15.65 5.55 0.09 -5.98 16 7 C 0.07 0.48 3.03 -68.86 -0.21 0.28 16 8 H 0.07 0.40 7.49 -51.93 -0.39 0.01 16 9 C -0.14 -1.01 9.11 37.16 0.34 -0.67 16 10 N -0.66 -5.76 6.02 -99.03 -0.60 -6.35 16 11 C 0.07 0.64 3.24 -65.88 -0.21 0.43 16 12 H 0.06 0.46 7.53 -51.93 -0.39 0.07 16 13 C -0.13 -1.10 6.52 -24.59 -0.16 -1.26 16 14 C 0.10 1.09 6.69 -2.53 -0.02 1.08 16 15 N -0.63 -9.20 3.33 -170.52 -0.57 -9.77 16 16 C 0.55 10.83 7.87 -10.98 -0.09 10.74 16 17 O -0.52 -12.21 16.19 5.56 0.09 -12.12 16 18 C -0.15 -3.04 5.16 36.01 0.19 -2.86 16 19 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 20 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.12 1.45 4.97 -3.06 -0.02 1.44 16 29 H 0.22 0.24 7.80 -54.10 -0.42 -0.19 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.41 1.50 7.87 -40.82 -0.32 1.18 16 33 H 0.06 0.29 7.56 -51.93 -0.39 -0.11 16 34 H 0.08 0.61 5.91 -51.93 -0.31 0.30 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.36 3.23 7.21 -39.29 -0.28 2.95 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.81 8.14 -51.92 -0.42 0.38 16 39 H 0.08 0.87 7.47 -51.93 -0.39 0.48 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 42 H 0.09 1.72 7.85 -51.92 -0.41 1.32 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.08 1.13 7.99 -51.93 -0.42 0.71 16 45 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -37.14 394.17 -8.53 -45.67 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.61 Total: 0.41 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.03 Total: -0.33 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.77 Total: -46.16 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.18 Total: -18.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.14 -8.53 -45.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490811062.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.403 kcal (2) G-P(sol) polarization free energy of solvation -37.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds